Wall clock time and date at job start Tue Mar 31 2020 20:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.58392 * 2 1 4 4 C 1.53188 * 109.58562 * 120.43399 * 2 1 3 5 5 C 1.53032 * 109.31919 * 65.14982 * 4 2 1 6 6 H 1.09007 * 109.45597 * 301.36191 * 5 4 2 7 7 N 1.46491 * 109.46499 * 181.38495 * 5 4 2 8 8 C 1.34774 * 120.00298 * 155.00070 * 7 5 4 9 9 O 1.21625 * 119.99899 * 359.97438 * 8 7 5 10 10 C 1.47170 * 120.00134 * 180.02562 * 8 7 5 11 11 C 1.36613 * 125.16366 * 179.71996 * 10 8 7 12 12 C 1.36799 * 114.74789 * 179.78446 * 11 10 8 13 13 C 1.36617 * 114.74239 * 0.50078 * 12 11 10 14 14 C 1.47166 * 125.16015 * 179.72410 * 13 12 11 15 15 N 1.34773 * 120.00102 * 180.02562 * 14 13 12 16 16 O 1.21625 * 120.00070 * 0.03075 * 14 13 12 17 17 S 1.75838 * 109.67733 * 359.72823 * 13 12 11 18 18 C 1.53352 * 109.60730 * 61.37264 * 5 4 2 19 19 C 1.53200 * 109.14750 * 298.71609 * 18 5 4 20 20 N 1.46921 * 108.89149 * 54.57573 * 19 18 5 21 21 C 1.36940 * 120.62784 * 126.34534 * 20 19 18 22 22 H 1.07994 * 119.99966 * 207.71018 * 21 20 19 23 23 C 1.38815 * 120.00175 * 27.70890 * 21 20 19 24 24 N 1.31620 * 120.00010 * 17.38573 * 23 21 20 25 25 Si 1.86798 * 120.00070 * 197.38507 * 23 21 20 26 26 H 1.48503 * 109.47325 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47084 * 120.00070 * 25 23 21 28 28 H 1.48498 * 109.47107 * 240.00011 * 25 23 21 29 29 H 1.08997 * 109.47334 * 180.27948 * 1 2 3 30 30 H 1.09006 * 109.46515 * 300.27929 * 1 2 3 31 31 H 1.09000 * 109.46981 * 60.27419 * 1 2 3 32 32 H 1.09006 * 109.49433 * 185.10472 * 4 2 1 33 33 H 1.09003 * 109.49452 * 305.19265 * 4 2 1 34 34 H 0.97010 * 119.99875 * 335.00007 * 7 5 4 35 35 H 1.08001 * 122.62529 * 359.97438 * 11 10 8 36 36 H 1.07998 * 122.62599 * 180.23122 * 12 11 10 37 37 H 0.97007 * 119.99770 * 359.97438 * 15 14 13 38 38 H 0.96995 * 120.00497 * 180.02562 * 15 14 13 39 39 H 1.09000 * 109.68529 * 178.75123 * 18 5 4 40 40 H 1.09001 * 109.47362 * 58.54901 * 18 5 4 41 41 H 1.09003 * 109.58359 * 294.71442 * 19 18 5 42 42 H 1.09000 * 109.58524 * 174.44035 * 19 18 5 43 43 H 0.96996 * 120.00153 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7311 1.2444 5 6 1.6415 -2.2056 1.1673 6 1 0.5565 -2.2829 1.0961 7 7 2.1023 -2.9009 2.3715 8 6 1.4751 -4.0196 2.7854 9 8 0.5261 -4.4517 2.1594 10 6 1.9378 -4.7178 3.9956 11 6 1.3788 -5.8526 4.5114 12 6 1.9832 -6.3248 5.6442 13 6 3.0409 -5.5787 6.0814 14 6 3.8494 -5.8728 7.2754 15 7 4.8729 -5.0632 7.6123 16 8 3.5941 -6.8465 7.9580 17 16 3.2893 -4.2137 5.0012 18 6 2.2807 -2.8493 -0.0692 19 6 1.7691 -2.1392 -1.3266 20 7 2.0225 -0.6980 -1.1954 21 6 2.7043 -0.0181 -2.1690 22 1 3.2700 0.8661 -1.9149 23 6 2.6685 -0.4653 -3.4827 24 7 1.7349 -1.3108 -3.8648 25 14 3.9451 0.1329 -4.7082 26 1 4.8773 1.0716 -4.0335 27 1 4.7064 -1.0277 -5.2360 28 1 3.2661 0.8308 -5.8294 29 1 -0.3634 -1.0276 0.0050 30 1 -0.3632 0.5182 0.8876 31 1 -0.3633 0.5096 -0.8924 32 1 3.1298 -0.6521 1.2904 33 1 1.6076 -0.2812 2.1364 34 1 2.8591 -2.5560 2.8710 35 1 0.5283 -6.3405 4.0586 36 1 1.6477 -7.2151 6.1553 37 1 5.0768 -4.2869 7.0675 38 1 5.4061 -5.2572 8.3990 39 1 2.0132 -3.9051 -0.1132 40 1 3.3646 -2.7503 -0.0110 41 1 0.6986 -2.3138 -1.4347 42 1 2.2922 -2.5241 -2.2019 43 1 1.7096 -1.6230 -4.7828 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947795395.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:07 Heat of formation + Delta-G solvation = -23.173580 kcal Electronic energy + Delta-G solvation = -26406.949664 eV Core-core repulsion = 22579.099346 eV Total energy + Delta-G solvation = -3827.850318 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.10215 -39.85173 -38.06763 -37.14341 -34.62687 -34.24955 -32.62825 -31.14892 -30.32862 -29.39384 -27.07545 -26.04618 -24.31796 -22.58989 -22.10932 -21.92676 -20.91009 -19.71009 -19.26918 -18.18895 -17.52150 -17.03794 -16.70081 -16.14020 -15.76113 -15.39621 -15.09496 -14.90398 -14.66054 -14.11518 -13.83151 -13.78406 -13.58783 -13.14133 -13.02842 -12.74233 -12.59967 -12.49843 -12.26149 -11.59035 -11.46582 -11.12602 -10.98530 -10.86937 -10.75810 -10.66028 -10.41933 -10.29357 -10.23348 -10.17351 -9.95831 -9.77892 -9.44014 -9.30535 -9.09360 -8.84053 -8.45735 -6.73236 -5.81899 -3.24474 -0.29532 0.85378 1.23136 1.72525 2.67876 2.90622 3.03817 3.07897 3.34922 3.43006 3.44596 4.34958 4.45597 4.57819 4.78533 4.95718 5.19701 5.32195 5.36048 5.51355 5.51938 5.64529 5.71015 5.85462 5.94364 6.00199 6.16842 6.19424 6.22684 6.33020 6.39389 6.52466 6.58368 6.69475 6.73025 6.77433 6.89286 7.11160 7.33107 7.45566 7.64535 7.66101 7.77275 8.10356 8.41934 9.17767 9.81155 10.37459 11.26387 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.022166 B = 0.002385 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.913220 B =11735.953288 C =12016.748180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.170 3.830 3 H 0.067 0.933 4 C -0.133 4.133 5 C 0.149 3.851 6 H 0.090 0.910 7 N -0.716 5.716 8 C 0.580 3.420 9 O -0.517 6.517 10 C -0.209 4.209 11 C -0.079 4.079 12 C -0.059 4.059 13 C -0.248 4.248 14 C 0.597 3.403 15 N -0.849 5.849 16 O -0.527 6.527 17 S 0.183 5.817 18 C -0.148 4.148 19 C 0.173 3.827 20 N -0.585 5.585 21 C -0.253 4.253 22 H 0.066 0.934 23 C 0.003 3.997 24 N -0.899 5.899 25 Si 0.901 3.099 26 H -0.278 1.278 27 H -0.289 1.289 28 H -0.291 1.291 29 H 0.049 0.951 30 H 0.036 0.964 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.392 0.608 35 H 0.163 0.837 36 H 0.160 0.840 37 H 0.401 0.599 38 H 0.411 0.589 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.022 0.978 42 H 0.090 0.910 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.685 -4.809 21.252 22.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.062 3.938 3 H 0.085 0.915 4 C -0.173 4.173 5 C 0.046 3.954 6 H 0.108 0.892 7 N -0.366 5.366 8 C 0.364 3.636 9 O -0.394 6.394 10 C -0.331 4.331 11 C -0.111 4.111 12 C -0.093 4.093 13 C -0.369 4.369 14 C 0.381 3.619 15 N -0.413 5.413 16 O -0.405 6.405 17 S 0.450 5.550 18 C -0.188 4.188 19 C 0.047 3.953 20 N -0.306 5.306 21 C -0.383 4.383 22 H 0.084 0.916 23 C -0.195 4.195 24 N -0.543 5.543 25 Si 0.731 3.269 26 H -0.203 1.203 27 H -0.216 1.216 28 H -0.218 1.218 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.225 0.775 35 H 0.180 0.820 36 H 0.178 0.822 37 H 0.229 0.771 38 H 0.242 0.758 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.040 0.960 42 H 0.108 0.892 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.740 -4.576 20.860 21.876 hybrid contribution 0.348 -0.449 -0.370 0.678 sum 5.087 -5.025 20.490 21.702 Atomic orbital electron populations 1.22318 0.98650 1.01145 1.00174 1.20435 0.91825 0.95129 0.86409 0.91512 1.22316 1.01270 0.93873 0.99835 1.21288 1.00087 0.91382 0.82599 0.89237 1.46275 1.34245 1.26526 1.29532 1.17063 0.83103 0.80780 0.82621 1.90855 1.27382 1.65498 1.55686 1.25140 1.02707 1.02940 1.02330 1.20636 1.01057 0.94413 0.95001 1.20615 0.93163 1.00231 0.95254 1.24739 1.05525 1.03532 1.03104 1.17035 0.79572 0.82348 0.82899 1.43679 1.34396 1.30430 1.32772 1.90877 1.69315 1.27902 1.52367 1.83857 1.29190 1.24590 1.17321 1.22648 1.00225 0.99243 0.96673 1.20751 0.97831 0.82886 0.93865 1.44178 1.63785 1.03450 1.19210 1.19193 1.22056 1.10293 0.86724 0.91584 1.25052 0.97701 0.99978 0.96816 1.70040 1.31668 1.35794 1.16831 0.86253 0.81332 0.78046 0.81294 1.20283 1.21593 1.21757 0.93190 0.94457 0.92518 0.91778 0.92455 0.77488 0.81981 0.82229 0.77067 0.75756 0.92741 0.92561 0.95967 0.89169 0.93621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 9.03 37.16 0.34 -2.68 16 2 C 0.17 3.28 3.29 -67.60 -0.22 3.06 16 3 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 4 C -0.13 -2.08 5.02 -26.62 -0.13 -2.21 16 5 C 0.15 2.44 2.21 -67.74 -0.15 2.29 16 6 H 0.09 1.65 5.92 -51.93 -0.31 1.34 16 7 N -0.72 -9.57 5.07 -54.77 -0.28 -9.85 16 8 C 0.58 8.32 7.77 -12.64 -0.10 8.22 16 9 O -0.52 -9.37 16.48 5.26 0.09 -9.28 16 10 C -0.21 -2.32 6.46 -36.54 -0.24 -2.56 16 11 C -0.08 -0.80 9.88 -40.69 -0.40 -1.20 16 12 C -0.06 -0.54 9.88 -40.69 -0.40 -0.95 16 13 C -0.25 -2.21 6.46 -36.54 -0.24 -2.45 16 14 C 0.60 5.50 8.07 -12.64 -0.10 5.39 16 15 N -0.85 -4.43 8.87 30.37 0.27 -4.16 16 16 O -0.53 -6.74 17.65 5.26 0.09 -6.65 16 17 S 0.18 1.41 21.40 -107.50 -2.30 -0.89 16 18 C -0.15 -2.81 5.68 -26.45 -0.15 -2.96 16 19 C 0.17 4.03 4.89 -3.71 -0.02 4.01 16 20 N -0.58 -13.77 2.70 -164.77 -0.45 -14.22 16 21 C -0.25 -6.63 9.58 -15.06 -0.14 -6.78 16 22 H 0.07 1.70 7.89 -52.49 -0.41 1.29 16 23 C 0.00 0.09 4.91 -17.43 -0.09 0.01 16 24 N -0.90 -25.56 11.19 55.49 0.62 -24.94 16 25 Si 0.90 21.17 29.59 -169.99 -5.03 16.14 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H 0.05 0.96 5.72 -51.93 -0.30 0.66 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.39 4.13 7.71 -40.82 -0.31 3.82 16 35 H 0.16 1.57 8.04 -52.49 -0.42 1.15 16 36 H 0.16 1.30 8.04 -52.49 -0.42 0.87 16 37 H 0.40 1.27 7.93 -40.82 -0.32 0.94 16 38 H 0.41 1.49 8.93 -40.82 -0.36 1.13 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.02 0.55 7.50 -51.93 -0.39 0.17 16 42 H 0.09 2.38 6.03 -51.93 -0.31 2.06 16 43 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 366.22 15.07 5.52 5.52 Total: -1.00 -32.92 366.22 -9.16 -42.08 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.65 Total: 5.05 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -2.05 Total: 1.20 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.17 Total: -53.16 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.18 Total: -15.93 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.30 Total: -0.89 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.92 -9.16 -42.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947795395.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.910 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds