Wall clock time and date at job start Tue Mar 31 2020 20:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.58176 * 2 1 4 4 C 1.53187 * 109.70631 * 239.64261 * 2 1 3 5 5 C 1.53046 * 109.31183 * 294.77963 * 4 2 1 6 6 H 1.08998 * 109.46221 * 58.65177 * 5 4 2 7 7 N 1.46499 * 109.45791 * 178.61385 * 5 4 2 8 8 C 1.34781 * 119.99985 * 204.99746 * 7 5 4 9 9 O 1.21678 * 119.99835 * 359.97438 * 8 7 5 10 10 C 1.46729 * 119.99960 * 179.97438 * 8 7 5 11 11 C 1.34877 * 125.05346 * 179.72047 * 10 8 7 12 12 C 1.38942 * 113.65055 * 179.86545 * 11 10 8 13 13 C 1.47340 * 122.95895 * 180.16642 * 12 11 10 14 14 N 1.34773 * 119.99760 * 180.24470 * 13 12 11 15 15 O 1.21612 * 119.99849 * 0.25205 * 13 12 11 16 16 C 1.36655 * 114.07662 * 0.42056 * 12 11 10 17 17 S 1.70593 * 110.53387 * 359.76973 * 16 12 11 18 18 C 1.53044 * 109.53404 * 298.63052 * 5 4 2 19 19 C 1.52755 * 109.38132 * 61.24392 * 18 5 4 20 20 N 1.46923 * 109.00900 * 305.58408 * 19 18 5 21 21 C 1.36943 * 120.62930 * 233.58508 * 20 19 18 22 22 H 1.08004 * 119.99729 * 152.16663 * 21 20 19 23 23 C 1.38806 * 119.99865 * 332.16538 * 21 20 19 24 24 N 1.31614 * 120.00503 * 342.77410 * 23 21 20 25 25 Si 1.86807 * 119.99640 * 162.77186 * 23 21 20 26 26 H 1.48505 * 109.47082 * 179.97438 * 25 23 21 27 27 H 1.48498 * 109.47280 * 300.00267 * 25 23 21 28 28 H 1.48498 * 109.46916 * 60.00563 * 25 23 21 29 29 H 1.09006 * 109.47413 * 299.71489 * 1 2 3 30 30 H 1.08996 * 109.47336 * 59.71776 * 1 2 3 31 31 H 1.09006 * 109.47238 * 179.72000 * 1 2 3 32 32 H 1.09004 * 109.49624 * 54.72651 * 4 2 1 33 33 H 1.08999 * 109.49918 * 174.82652 * 4 2 1 34 34 H 0.97006 * 120.00167 * 24.99764 * 7 5 4 35 35 H 1.07995 * 123.17447 * 0.02562 * 11 10 8 36 36 H 0.96997 * 120.00438 * 0.02562 * 14 13 12 37 37 H 0.97000 * 120.00201 * 180.02562 * 14 13 12 38 38 H 1.08002 * 124.73290 * 179.79226 * 16 12 11 39 39 H 1.09007 * 109.49256 * 181.31765 * 18 5 4 40 40 H 1.09002 * 109.49531 * 301.41463 * 18 5 4 41 41 H 1.09005 * 109.50719 * 185.70148 * 19 18 5 42 42 H 1.09006 * 109.43430 * 65.42411 * 19 18 5 43 43 H 0.97004 * 120.00231 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0465 -0.7289 -1.2444 5 6 1.6473 -2.2044 -1.1690 6 1 0.5624 -2.2840 -1.0994 7 7 2.1111 -2.8976 -2.3734 8 6 1.4866 -4.0174 -2.7890 9 8 0.5379 -4.4527 -2.1637 10 6 1.9507 -4.7114 -3.9956 11 6 1.4067 -5.8384 -4.4987 12 6 2.0320 -6.2917 -5.6536 13 6 1.6025 -7.5024 -6.3753 14 7 2.2558 -7.8908 -7.4882 15 8 0.6585 -8.1510 -5.9667 16 6 3.0839 -5.5188 -6.0582 17 16 3.3024 -4.2022 -4.9957 18 6 2.2858 -2.8448 0.0657 19 6 1.7768 -2.1410 1.3223 20 7 2.0225 -0.6980 1.1954 21 6 2.7026 -0.0177 2.1700 22 1 3.2649 0.8692 1.9173 23 6 2.6694 -0.4679 3.4826 24 7 1.7412 -1.3200 3.8628 25 14 3.9422 0.1357 4.7095 26 1 3.6896 -0.4894 6.0327 27 1 5.3002 -0.2357 4.2372 28 1 3.8480 1.6124 4.8343 29 1 -0.3634 0.5094 0.8926 30 1 -0.3634 0.5182 -0.8874 31 1 -0.3634 -1.0277 -0.0050 32 1 1.6106 -0.2792 -2.1366 33 1 3.1326 -0.6476 -1.2891 34 1 2.8676 -2.5508 -2.8717 35 1 0.5631 -6.3396 -4.0478 36 1 3.0090 -7.3736 -7.8140 37 1 1.9729 -8.6877 -7.9636 38 1 3.6917 -5.7141 -6.9293 39 1 2.0201 -3.9012 0.1060 40 1 3.3696 -2.7436 0.0086 41 1 2.3050 -2.5263 2.1945 42 1 0.7073 -2.3214 1.4311 43 1 1.7182 -1.6349 4.7800 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948069622.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:14 Heat of formation + Delta-G solvation = -24.585627 kcal Electronic energy + Delta-G solvation = -26462.934519 eV Core-core repulsion = 22635.022970 eV Total energy + Delta-G solvation = -3827.911549 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.33751 -39.72154 -37.94043 -36.96535 -34.54883 -34.16288 -32.57799 -31.12124 -30.27350 -29.28894 -26.97147 -25.91645 -24.54619 -23.48361 -21.94322 -21.49065 -20.56164 -19.49687 -19.19548 -18.21870 -17.46790 -17.36133 -16.70557 -16.00190 -15.70103 -15.31879 -14.91130 -14.76552 -14.55690 -13.95559 -13.78702 -13.73538 -13.52856 -13.13417 -13.05795 -13.00173 -12.59670 -12.47424 -12.21782 -11.65244 -11.42168 -11.07587 -10.94981 -10.79537 -10.62378 -10.46490 -10.37567 -10.21123 -10.14920 -10.12653 -9.89226 -9.72913 -9.40058 -9.36355 -9.06307 -8.77287 -8.41230 -6.69260 -5.78038 -3.20693 -0.00695 0.96177 1.33584 1.38205 2.88475 3.00045 3.22066 3.27490 3.38665 3.44874 3.45311 4.31347 4.48782 4.57427 4.72092 4.78874 5.25152 5.35787 5.36963 5.39891 5.57202 5.67092 5.76215 5.85586 5.99819 6.05007 6.23510 6.27453 6.33121 6.39247 6.44752 6.57277 6.63826 6.78951 6.84283 6.86178 6.93799 7.15653 7.38423 7.55051 7.70266 7.79941 7.83472 8.22166 8.45735 9.21494 9.85021 10.41520 11.30266 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.024144 B = 0.002338 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.436139 B =11975.419488 C =12014.501506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.171 3.829 3 H 0.066 0.934 4 C -0.133 4.133 5 C 0.150 3.850 6 H 0.089 0.911 7 N -0.719 5.719 8 C 0.584 3.416 9 O -0.520 6.520 10 C -0.258 4.258 11 C -0.018 4.018 12 C -0.161 4.161 13 C 0.583 3.417 14 N -0.851 5.851 15 O -0.532 6.532 16 C -0.209 4.209 17 S 0.250 5.750 18 C -0.148 4.148 19 C 0.173 3.827 20 N -0.585 5.585 21 C -0.254 4.254 22 H 0.065 0.935 23 C 0.004 3.996 24 N -0.900 5.900 25 Si 0.902 3.098 26 H -0.291 1.291 27 H -0.284 1.284 28 H -0.283 1.283 29 H 0.055 0.945 30 H 0.036 0.964 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.391 0.609 35 H 0.165 0.835 36 H 0.399 0.601 37 H 0.406 0.594 38 H 0.176 0.824 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.090 0.910 42 H 0.022 0.978 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.104 -6.760 -24.740 26.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.062 3.938 3 H 0.084 0.916 4 C -0.173 4.173 5 C 0.047 3.953 6 H 0.107 0.893 7 N -0.368 5.368 8 C 0.368 3.632 9 O -0.397 6.397 10 C -0.379 4.379 11 C -0.049 4.049 12 C -0.180 4.180 13 C 0.367 3.633 14 N -0.415 5.415 15 O -0.409 6.409 16 C -0.349 4.349 17 S 0.518 5.482 18 C -0.188 4.188 19 C 0.047 3.953 20 N -0.306 5.306 21 C -0.384 4.384 22 H 0.083 0.917 23 C -0.195 4.195 24 N -0.543 5.543 25 Si 0.731 3.269 26 H -0.217 1.217 27 H -0.211 1.211 28 H -0.209 1.209 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.224 0.776 35 H 0.183 0.817 36 H 0.228 0.772 37 H 0.238 0.762 38 H 0.193 0.807 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.108 0.892 42 H 0.040 0.960 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.788 -6.178 -23.579 25.053 hybrid contribution 0.393 -0.957 -0.195 1.053 sum 6.182 -7.135 -23.774 25.580 Atomic orbital electron populations 1.22310 0.98636 1.01166 1.00135 1.20429 0.91834 0.95113 0.86407 0.91581 1.22318 1.01232 0.93958 0.99782 1.21197 1.00040 0.91353 0.82701 0.89297 1.46242 1.34389 1.26626 1.29573 1.16934 0.83002 0.80660 0.82592 1.90869 1.27498 1.65442 1.55902 1.24406 1.05171 1.04041 1.04260 1.20357 0.99106 0.92975 0.92474 1.19042 0.99852 0.99455 0.99632 1.17618 0.81960 0.83647 0.80103 1.43660 1.36537 1.32224 1.29065 1.90875 1.27940 1.55326 1.66783 1.26068 1.02133 1.01021 1.05629 1.83065 1.27150 1.22758 1.15243 1.22520 1.00222 0.99319 0.96737 1.20660 0.97882 0.82883 0.93865 1.44146 1.63995 1.03309 1.19173 1.19106 1.22392 1.10114 0.86759 0.91707 1.25045 0.97708 0.99959 0.96797 1.70023 1.31861 1.35389 1.17060 0.86389 0.81627 0.78323 0.80513 1.21682 1.21089 1.20924 0.92538 0.94472 0.93175 0.92482 0.91801 0.77587 0.81742 0.77195 0.76231 0.80698 0.92742 0.92610 0.89223 0.96010 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 9.04 37.16 0.34 -2.75 16 2 C 0.17 3.36 3.28 -67.60 -0.22 3.14 16 3 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 4 C -0.13 -2.14 5.03 -26.61 -0.13 -2.27 16 5 C 0.15 2.55 2.21 -67.88 -0.15 2.40 16 6 H 0.09 1.71 5.94 -51.93 -0.31 1.40 16 7 N -0.72 -10.05 5.07 -55.05 -0.28 -10.33 16 8 C 0.58 8.93 7.75 -12.83 -0.10 8.83 16 9 O -0.52 -10.13 16.45 5.21 0.09 -10.04 16 10 C -0.26 -3.06 6.37 -37.35 -0.24 -3.30 16 11 C -0.02 -0.22 9.47 -40.51 -0.38 -0.61 16 12 C -0.16 -1.52 5.82 -106.51 -0.62 -2.14 16 13 C 0.58 5.77 8.06 -12.56 -0.10 5.67 16 14 N -0.85 -4.17 8.84 30.41 0.27 -3.91 16 15 O -0.53 -7.71 17.52 5.27 0.09 -7.62 16 16 C -0.21 -1.27 10.41 30.16 0.31 -0.95 16 17 S 0.25 1.77 22.09 -107.50 -2.37 -0.60 16 18 C -0.15 -2.91 5.63 -26.83 -0.15 -3.06 16 19 C 0.17 4.13 4.87 -3.94 -0.02 4.11 16 20 N -0.58 -14.05 2.71 -165.04 -0.45 -14.49 16 21 C -0.25 -6.76 9.58 -15.06 -0.14 -6.90 16 22 H 0.07 1.68 7.89 -52.48 -0.41 1.27 16 23 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 24 N -0.90 -25.92 11.19 55.49 0.62 -25.30 16 25 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.99 5.76 -51.93 -0.30 0.69 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.39 4.28 7.68 -40.82 -0.31 3.97 16 35 H 0.17 2.29 7.95 -52.49 -0.42 1.87 16 36 H 0.40 0.65 7.29 -40.82 -0.30 0.35 16 37 H 0.41 1.53 8.93 -40.82 -0.36 1.17 16 38 H 0.18 0.34 6.99 -52.49 -0.37 -0.03 16 39 H 0.05 1.09 8.14 -51.92 -0.42 0.67 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.09 2.40 6.04 -51.93 -0.31 2.09 16 42 H 0.02 0.56 7.52 -51.93 -0.39 0.17 16 43 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 364.30 15.07 5.49 5.49 Total: -1.00 -34.70 364.30 -8.84 -43.54 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.57 Total: 4.68 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -1.70 Total: 2.19 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.16 Total: -54.03 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: 0.18 Total: -17.66 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.37 Total: -0.60 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.70 -8.84 -43.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948069622.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.957 kcal (2) G-P(sol) polarization free energy of solvation -34.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds