Wall clock time and date at job start Tue Mar 31 2020 20:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.58176 * 2 1 4 4 C 1.53187 * 109.70631 * 239.64261 * 2 1 3 5 5 C 1.53046 * 109.31183 * 294.77963 * 4 2 1 6 6 H 1.08998 * 109.46221 * 58.65177 * 5 4 2 7 7 N 1.46499 * 109.45791 * 178.61385 * 5 4 2 8 8 C 1.34781 * 119.99985 * 204.99746 * 7 5 4 9 9 O 1.21678 * 119.99835 * 359.97438 * 8 7 5 10 10 C 1.46729 * 119.99960 * 179.97438 * 8 7 5 11 11 C 1.34877 * 125.05346 * 179.72047 * 10 8 7 12 12 C 1.38942 * 113.65055 * 179.86545 * 11 10 8 13 13 C 1.47340 * 122.95895 * 180.16642 * 12 11 10 14 14 N 1.34773 * 119.99760 * 180.24470 * 13 12 11 15 15 O 1.21612 * 119.99849 * 0.25205 * 13 12 11 16 16 C 1.36655 * 114.07662 * 0.42056 * 12 11 10 17 17 S 1.70593 * 110.53387 * 359.76973 * 16 12 11 18 18 C 1.53044 * 109.53404 * 298.63052 * 5 4 2 19 19 C 1.52755 * 109.38132 * 61.24392 * 18 5 4 20 20 N 1.46923 * 109.00900 * 305.58408 * 19 18 5 21 21 C 1.36943 * 120.62930 * 233.58508 * 20 19 18 22 22 H 1.08004 * 119.99729 * 152.16663 * 21 20 19 23 23 C 1.38806 * 119.99865 * 332.16538 * 21 20 19 24 24 N 1.31614 * 120.00503 * 342.77410 * 23 21 20 25 25 Si 1.86807 * 119.99640 * 162.77186 * 23 21 20 26 26 H 1.48505 * 109.47082 * 179.97438 * 25 23 21 27 27 H 1.48498 * 109.47280 * 300.00267 * 25 23 21 28 28 H 1.48498 * 109.46916 * 60.00563 * 25 23 21 29 29 H 1.09006 * 109.47413 * 299.71489 * 1 2 3 30 30 H 1.08996 * 109.47336 * 59.71776 * 1 2 3 31 31 H 1.09006 * 109.47238 * 179.72000 * 1 2 3 32 32 H 1.09004 * 109.49624 * 54.72651 * 4 2 1 33 33 H 1.08999 * 109.49918 * 174.82652 * 4 2 1 34 34 H 0.97006 * 120.00167 * 24.99764 * 7 5 4 35 35 H 1.07995 * 123.17447 * 0.02562 * 11 10 8 36 36 H 0.96997 * 120.00438 * 0.02562 * 14 13 12 37 37 H 0.97000 * 120.00201 * 180.02562 * 14 13 12 38 38 H 1.08002 * 124.73290 * 179.79226 * 16 12 11 39 39 H 1.09007 * 109.49256 * 181.31765 * 18 5 4 40 40 H 1.09002 * 109.49531 * 301.41463 * 18 5 4 41 41 H 1.09005 * 109.50719 * 185.70148 * 19 18 5 42 42 H 1.09006 * 109.43430 * 65.42411 * 19 18 5 43 43 H 0.97004 * 120.00231 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0465 -0.7289 -1.2444 5 6 1.6473 -2.2044 -1.1690 6 1 0.5624 -2.2840 -1.0994 7 7 2.1111 -2.8976 -2.3734 8 6 1.4866 -4.0174 -2.7890 9 8 0.5379 -4.4527 -2.1637 10 6 1.9507 -4.7114 -3.9956 11 6 1.4067 -5.8384 -4.4987 12 6 2.0320 -6.2917 -5.6536 13 6 1.6025 -7.5024 -6.3753 14 7 2.2558 -7.8908 -7.4882 15 8 0.6585 -8.1510 -5.9667 16 6 3.0839 -5.5188 -6.0582 17 16 3.3024 -4.2022 -4.9957 18 6 2.2858 -2.8448 0.0657 19 6 1.7768 -2.1410 1.3223 20 7 2.0225 -0.6980 1.1954 21 6 2.7026 -0.0177 2.1700 22 1 3.2649 0.8692 1.9173 23 6 2.6694 -0.4679 3.4826 24 7 1.7412 -1.3200 3.8628 25 14 3.9422 0.1357 4.7095 26 1 3.6896 -0.4894 6.0327 27 1 5.3002 -0.2357 4.2372 28 1 3.8480 1.6124 4.8343 29 1 -0.3634 0.5094 0.8926 30 1 -0.3634 0.5182 -0.8874 31 1 -0.3634 -1.0277 -0.0050 32 1 1.6106 -0.2792 -2.1366 33 1 3.1326 -0.6476 -1.2891 34 1 2.8676 -2.5508 -2.8717 35 1 0.5631 -6.3396 -4.0478 36 1 3.0090 -7.3736 -7.8140 37 1 1.9729 -8.6877 -7.9636 38 1 3.6917 -5.7141 -6.9293 39 1 2.0201 -3.9012 0.1060 40 1 3.3696 -2.7436 0.0086 41 1 2.3050 -2.5263 2.1945 42 1 0.7073 -2.3214 1.4311 43 1 1.7182 -1.6349 4.7800 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948069622.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:14 Heat of formation + Delta-G solvation = -52.071932 kcal Electronic energy + Delta-G solvation = -26464.126415 eV Core-core repulsion = 22635.022970 eV Total energy + Delta-G solvation = -3829.103445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.30751 -40.77923 -39.40660 -37.88165 -36.08005 -34.81784 -34.34964 -32.64507 -31.72238 -30.58350 -28.55595 -26.69708 -26.18173 -24.76009 -23.65340 -22.84086 -21.65345 -20.44583 -20.11847 -19.62593 -18.68615 -18.12960 -17.93626 -17.38392 -16.76859 -16.45073 -16.29397 -15.85206 -15.78999 -15.51931 -15.38085 -14.98802 -14.61700 -14.40105 -14.26199 -14.06986 -13.91246 -13.79010 -13.70333 -13.14928 -12.92463 -12.62475 -12.55627 -12.38218 -12.29800 -12.05975 -12.03061 -11.78561 -11.50880 -11.36887 -11.20171 -10.98442 -10.75685 -10.54491 -10.25842 -9.97879 -9.65610 -8.67889 -7.84025 -5.29018 -0.70973 0.28552 0.53605 0.64706 1.48830 1.51127 1.57732 1.91547 1.98720 2.32558 2.53501 2.57703 3.31642 3.59496 3.67273 3.83429 3.94409 4.04123 4.06968 4.09755 4.28089 4.44434 4.51980 4.59031 4.71509 4.73997 4.84679 4.85190 4.95095 4.98348 5.08316 5.12527 5.17353 5.33875 5.44110 5.44679 5.55864 5.69847 5.76304 5.85294 6.40676 6.41847 6.43149 7.08987 7.17068 7.28391 7.89279 8.41604 9.22688 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.024144 B = 0.002338 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.436139 B =11975.419488 C =12014.501506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.160 3.840 3 H 0.074 0.926 4 C -0.118 4.118 5 C 0.160 3.840 6 H 0.065 0.935 7 N -0.704 5.704 8 C 0.582 3.418 9 O -0.576 6.576 10 C -0.301 4.301 11 C -0.028 4.028 12 C -0.191 4.191 13 C 0.580 3.420 14 N -0.823 5.823 15 O -0.594 6.594 16 C -0.170 4.170 17 S 0.342 5.658 18 C -0.133 4.133 19 C 0.185 3.815 20 N -0.599 5.599 21 C -0.256 4.256 22 H 0.074 0.926 23 C -0.054 4.054 24 N -0.938 5.938 25 Si 0.966 3.034 26 H -0.301 1.301 27 H -0.276 1.276 28 H -0.274 1.274 29 H 0.028 0.972 30 H 0.075 0.925 31 H 0.032 0.968 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.410 0.590 35 H 0.127 0.873 36 H 0.419 0.581 37 H 0.415 0.585 38 H 0.229 0.771 39 H 0.041 0.959 40 H 0.064 0.936 41 H 0.054 0.946 42 H -0.011 1.011 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.679 -5.170 -28.963 30.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.054 3.946 3 H 0.092 0.908 4 C -0.157 4.157 5 C 0.056 3.944 6 H 0.083 0.917 7 N -0.354 5.354 8 C 0.369 3.631 9 O -0.457 6.457 10 C -0.421 4.421 11 C -0.060 4.060 12 C -0.208 4.208 13 C 0.364 3.636 14 N -0.387 5.387 15 O -0.476 6.476 16 C -0.310 4.310 17 S 0.610 5.390 18 C -0.174 4.174 19 C 0.058 3.942 20 N -0.321 5.321 21 C -0.386 4.386 22 H 0.092 0.908 23 C -0.250 4.250 24 N -0.584 5.584 25 Si 0.795 3.205 26 H -0.228 1.228 27 H -0.202 1.202 28 H -0.200 1.200 29 H 0.047 0.953 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.247 0.753 35 H 0.145 0.855 36 H 0.252 0.748 37 H 0.247 0.753 38 H 0.246 0.754 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.007 0.993 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.444 -4.548 -27.909 29.813 hybrid contribution -0.661 -1.421 0.981 1.849 sum 8.783 -5.969 -26.928 28.946 Atomic orbital electron populations 1.22206 0.98359 1.00217 1.00630 1.20716 0.92085 0.95676 0.86172 0.90776 1.22160 1.02242 0.92242 0.99102 1.20819 0.98473 0.92364 0.82711 0.91700 1.45883 1.34830 1.26177 1.28526 1.17420 0.82100 0.80382 0.83174 1.90838 1.30038 1.66841 1.58022 1.24061 1.08750 1.04668 1.04651 1.20269 0.98653 0.93320 0.93807 1.18831 1.01709 1.00654 0.99578 1.17790 0.81474 0.83437 0.80871 1.43420 1.36008 1.32194 1.27104 1.90849 1.30835 1.57232 1.68706 1.26693 0.99817 0.98741 1.05776 1.82738 1.22625 1.21244 1.12423 1.22272 1.00570 0.98224 0.96298 1.20314 0.95451 0.83821 0.94613 1.44359 1.64329 1.03348 1.20078 1.19510 1.21898 1.09914 0.87297 0.90790 1.25827 0.99568 1.00787 0.98774 1.70207 1.33918 1.37381 1.16875 0.85359 0.79441 0.78004 0.77740 1.22752 1.20237 1.19950 0.95271 0.90581 0.94912 0.88695 0.90271 0.75256 0.85524 0.74815 0.75299 0.75403 0.94023 0.91712 0.92804 0.99342 0.94376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.84 9.04 71.98 0.65 -5.19 16 2 C 0.16 6.13 3.28 44.97 0.15 6.28 16 3 H 0.07 2.73 7.93 -2.39 -0.02 2.71 16 4 C -0.12 -3.45 5.03 30.67 0.15 -3.30 16 5 C 0.16 5.38 2.21 45.02 0.10 5.48 16 6 H 0.06 2.55 5.94 -2.39 -0.01 2.54 16 7 N -0.70 -18.58 5.07 -446.32 -2.26 -20.84 16 8 C 0.58 17.97 7.75 86.46 0.67 18.64 16 9 O -0.58 -23.99 16.45 -4.28 -0.07 -24.06 16 10 C -0.30 -6.87 6.37 23.72 0.15 -6.72 16 11 C -0.03 -0.71 9.47 21.67 0.21 -0.50 16 12 C -0.19 -3.26 5.82 -21.08 -0.12 -3.38 16 13 C 0.58 10.93 8.06 86.64 0.70 11.63 16 14 N -0.82 -5.63 8.84 -175.95 -1.56 -7.19 16 15 O -0.59 -18.07 17.52 -4.07 -0.07 -18.14 16 16 C -0.17 -1.20 10.41 67.45 0.70 -0.50 16 17 S 0.34 3.25 22.09 -56.49 -1.25 2.00 16 18 C -0.13 -5.38 5.63 30.53 0.17 -5.21 16 19 C 0.18 9.26 4.87 86.22 0.42 9.68 16 20 N -0.60 -29.16 2.71 -676.06 -1.83 -30.99 16 21 C -0.26 -13.68 9.58 84.03 0.81 -12.88 16 22 H 0.07 3.76 7.89 -2.91 -0.02 3.74 16 23 C -0.05 -3.04 4.91 84.86 0.42 -2.62 16 24 N -0.94 -56.62 11.19 21.65 0.24 -56.38 16 25 Si 0.97 44.73 29.59 68.60 2.03 46.76 16 26 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 27 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 28 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 29 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.03 1.33 5.76 -2.38 -0.01 1.31 16 32 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 33 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.41 7.50 7.68 -92.70 -0.71 6.79 16 35 H 0.13 4.03 7.95 -2.91 -0.02 4.01 16 36 H 0.42 -0.71 7.29 -92.71 -0.68 -1.38 16 37 H 0.41 2.11 8.93 -92.71 -0.83 1.28 16 38 H 0.23 -0.93 6.99 -2.91 -0.02 -0.95 16 39 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.05 3.07 6.04 -2.38 -0.01 3.05 16 42 H -0.01 -0.64 7.52 -2.38 -0.02 -0.66 16 43 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -85.19 364.30 -0.72 -85.91 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -1.13 Total: 11.51 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 5.17 Total: 11.41 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -5.41 Total: -115.39 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -0.14 Total: -42.20 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -1.25 Total: 2.00 kcal Total: -85.19 -0.72 -85.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948069622.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.836 kcal (2) G-P(sol) polarization free energy of solvation -85.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds