Wall clock time and date at job start Tue Mar 31 2020 20:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09002 * 109.69717 * 2 1 4 4 C 1.53188 * 109.58501 * 239.64657 * 2 1 3 5 5 C 1.53035 * 109.31122 * 185.57451 * 4 2 1 6 6 H 1.08993 * 109.45322 * 301.35044 * 5 4 2 7 7 N 1.46507 * 109.46093 * 181.38265 * 5 4 2 8 8 C 1.34780 * 119.99840 * 154.93007 * 7 5 4 9 9 O 1.21684 * 119.99992 * 0.02562 * 8 7 5 10 10 C 1.46738 * 119.99920 * 180.02562 * 8 7 5 11 11 C 1.34872 * 125.05731 * 180.02562 * 10 8 7 12 12 C 1.38931 * 113.65295 * 179.97438 * 11 10 8 13 13 C 1.47339 * 122.96022 * 179.97438 * 12 11 10 14 14 N 1.34775 * 120.00047 * 180.02562 * 13 12 11 15 15 O 1.21616 * 119.99946 * 0.02562 * 13 12 11 16 16 C 1.36655 * 114.07955 * 0.02562 * 12 11 10 17 17 S 1.70590 * 110.53231 * 359.97438 * 16 12 11 18 18 C 1.53045 * 109.53954 * 61.36850 * 5 4 2 19 19 C 1.53199 * 109.30815 * 298.63415 * 18 5 4 20 20 N 1.46922 * 109.58481 * 120.35567 * 2 1 3 21 21 C 1.36932 * 120.63267 * 353.37438 * 20 2 1 22 22 H 1.07998 * 119.99952 * 29.03578 * 21 20 2 23 23 C 1.38813 * 119.99917 * 209.02876 * 21 20 2 24 24 N 1.31620 * 120.00079 * 15.02993 * 23 21 20 25 25 Si 1.86797 * 120.00188 * 195.02262 * 23 21 20 26 26 H 1.48497 * 109.47119 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47234 * 120.00263 * 25 23 21 28 28 H 1.48500 * 109.47200 * 240.00636 * 25 23 21 29 29 H 1.09002 * 109.47021 * 299.64411 * 1 2 3 30 30 H 1.08999 * 109.46879 * 59.64439 * 1 2 3 31 31 H 1.09004 * 109.46853 * 179.64640 * 1 2 3 32 32 H 1.09004 * 109.50105 * 65.62238 * 4 2 1 33 33 H 1.08999 * 109.49907 * 305.52844 * 4 2 1 34 34 H 0.96996 * 119.99736 * 334.93865 * 7 5 4 35 35 H 1.08007 * 123.17010 * 0.25271 * 11 10 8 36 36 H 0.96998 * 119.99815 * 359.97438 * 14 13 12 37 37 H 0.97004 * 120.00131 * 180.02562 * 14 13 12 38 38 H 1.08007 * 124.73366 * 179.97438 * 16 12 11 39 39 H 1.08994 * 109.49715 * 58.57932 * 18 5 4 40 40 H 1.08996 * 109.50118 * 178.65396 * 18 5 4 41 41 H 1.08996 * 109.58572 * 174.42118 * 19 18 5 42 42 H 1.08995 * 109.58299 * 294.70455 * 19 18 5 43 43 H 0.97000 * 120.00552 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 -1.2454 5 6 3.5675 -0.8478 -1.1702 6 1 4.0059 0.1475 -1.0993 7 7 4.0652 -1.5157 -2.3755 8 6 5.3290 -1.3009 -2.7917 9 8 6.0568 -0.5527 -2.1661 10 6 5.8274 -1.9693 -3.9992 11 6 7.0696 -1.8291 -4.5056 12 6 7.2886 -2.5726 -5.6585 13 6 8.5725 -2.5711 -6.3815 14 7 8.7194 -3.3153 -7.4955 15 8 9.4996 -1.8984 -5.9729 16 6 6.2081 -3.3046 -6.0637 17 16 4.8948 -3.0716 -5.0002 18 6 3.9570 -1.6657 0.0634 19 6 3.4651 -0.9469 1.3237 20 7 2.0226 -0.6995 1.1945 21 6 1.1538 -1.1127 2.1689 22 1 0.1361 -1.3672 1.9124 23 6 1.5813 -1.2045 3.4864 24 7 2.7045 -0.6263 3.8557 25 14 0.5624 -2.1486 4.7353 26 1 -0.6461 -2.7009 4.0722 27 1 1.3714 -3.2610 5.2948 28 1 0.1520 -1.2349 5.8316 29 1 -0.3633 0.5083 0.8932 30 1 -0.3633 0.5193 -0.8868 31 1 -0.3633 -1.0277 -0.0063 32 1 1.7660 -0.1668 -2.1369 33 1 1.6030 -1.7252 -1.2914 34 1 3.4852 -2.1122 -2.8739 35 1 7.8242 -1.2017 -4.0546 36 1 7.9801 -3.8521 -7.8212 37 1 9.5648 -3.3146 -7.9713 38 1 6.1884 -3.9418 -6.9356 39 1 3.4984 -2.6527 0.0052 40 1 5.0412 -1.7700 0.1033 41 1 3.6519 -1.5717 2.1971 42 1 3.9922 0.0009 1.4330 43 1 3.0031 -0.6901 4.7763 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948069623.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:17 Heat of formation + Delta-G solvation = -24.370891 kcal Electronic energy + Delta-G solvation = -26345.285287 eV Core-core repulsion = 22517.383049 eV Total energy + Delta-G solvation = -3827.902237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.33393 -39.69166 -37.84907 -36.96241 -34.64189 -34.16271 -32.46192 -31.55396 -30.31538 -29.27245 -26.44737 -25.93449 -24.94987 -23.49364 -21.94013 -21.00390 -20.26859 -19.62781 -19.34577 -18.75256 -17.47186 -17.32030 -16.35543 -15.89150 -15.73270 -15.32081 -15.13100 -14.78001 -14.64639 -13.96678 -13.81051 -13.63281 -13.53342 -13.28939 -13.12317 -13.03497 -12.78160 -12.60594 -11.65364 -11.61508 -11.24326 -11.12249 -10.94012 -10.91413 -10.66770 -10.46612 -10.31875 -10.18917 -10.14925 -10.06478 -9.99029 -9.75474 -9.41575 -9.36767 -9.06428 -8.77112 -8.43026 -6.64799 -5.76588 -3.20803 -0.00807 0.96055 1.33481 1.38115 2.88381 2.99750 3.21908 3.26930 3.37544 3.45017 3.46686 4.31214 4.49055 4.57367 4.71957 4.78764 5.24230 5.34918 5.36121 5.41947 5.55907 5.66814 5.74515 5.85390 5.97356 6.13729 6.19821 6.29805 6.33086 6.37056 6.40865 6.48553 6.61888 6.78725 6.84075 6.86105 7.01413 7.08562 7.38263 7.54939 7.71307 7.82933 7.83441 8.21862 8.47200 9.22680 9.86280 10.43039 11.31995 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.024484 B = 0.002329 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.310169 B =12018.516924 C =12369.927685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.028 0.972 4 C -0.134 4.134 5 C 0.151 3.849 6 H 0.085 0.915 7 N -0.718 5.718 8 C 0.584 3.416 9 O -0.520 6.520 10 C -0.258 4.258 11 C -0.018 4.018 12 C -0.161 4.161 13 C 0.583 3.417 14 N -0.851 5.851 15 O -0.532 6.532 16 C -0.209 4.209 17 S 0.250 5.750 18 C -0.147 4.147 19 C 0.174 3.826 20 N -0.588 5.588 21 C -0.250 4.250 22 H 0.071 0.929 23 C 0.001 3.999 24 N -0.902 5.902 25 Si 0.900 3.100 26 H -0.278 1.278 27 H -0.290 1.290 28 H -0.291 1.291 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.391 0.609 35 H 0.165 0.835 36 H 0.399 0.601 37 H 0.406 0.594 38 H 0.176 0.824 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.091 0.909 42 H 0.021 0.979 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.728 -8.327 -24.784 26.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.174 4.174 5 C 0.048 3.952 6 H 0.103 0.897 7 N -0.368 5.368 8 C 0.368 3.632 9 O -0.397 6.397 10 C -0.379 4.379 11 C -0.049 4.049 12 C -0.180 4.180 13 C 0.367 3.633 14 N -0.415 5.415 15 O -0.409 6.409 16 C -0.348 4.348 17 S 0.518 5.482 18 C -0.188 4.188 19 C 0.048 3.952 20 N -0.311 5.311 21 C -0.380 4.380 22 H 0.088 0.912 23 C -0.197 4.197 24 N -0.546 5.546 25 Si 0.731 3.269 26 H -0.203 1.203 27 H -0.217 1.217 28 H -0.218 1.218 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.224 0.776 35 H 0.183 0.817 36 H 0.228 0.772 37 H 0.238 0.762 38 H 0.193 0.807 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.109 0.891 42 H 0.039 0.961 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.272 -7.828 -23.647 25.123 hybrid contribution 0.800 -0.697 -0.179 1.076 sum 4.072 -8.525 -23.826 25.631 Atomic orbital electron populations 1.21795 0.95704 1.01386 1.00400 1.20357 0.93102 0.93607 0.86581 0.95466 1.22398 0.93455 1.01737 0.99847 1.21137 0.94416 0.96871 0.82755 0.89683 1.46233 1.12501 1.48578 1.29492 1.16940 0.82355 0.81291 0.82603 1.90872 1.56160 1.36750 1.55912 1.24405 0.99801 1.09468 1.04202 1.20356 0.95766 0.96314 0.92472 1.19038 0.95213 1.04049 0.99675 1.17619 0.86739 0.78863 0.80110 1.43661 1.19012 1.49831 1.28981 1.90876 1.41370 1.41836 1.66841 1.26068 0.98426 1.04727 1.05625 1.83065 1.12220 1.37833 1.15108 1.22592 0.99891 0.99591 0.96705 1.20761 0.83178 0.97413 0.93849 1.44183 1.03011 1.64881 1.19036 1.19204 0.94801 1.37735 0.86223 0.91152 1.25108 0.97818 0.99780 0.97015 1.70022 1.23283 1.44527 1.16816 0.86255 0.79611 0.79530 0.81551 1.20309 1.21659 1.21778 0.91805 0.94291 0.92775 0.92586 0.91734 0.77564 0.81736 0.77195 0.76228 0.80693 0.92596 0.92749 0.89065 0.96089 0.93674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 7.94 37.16 0.30 -2.12 16 2 C 0.17 3.40 3.50 -67.60 -0.24 3.17 16 3 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.13 -2.18 4.84 -26.62 -0.13 -2.30 16 5 C 0.15 2.59 2.42 -67.88 -0.16 2.43 16 6 H 0.09 1.64 7.57 -51.93 -0.39 1.25 16 7 N -0.72 -10.07 5.07 -55.05 -0.28 -10.35 16 8 C 0.58 8.95 7.75 -12.83 -0.10 8.85 16 9 O -0.52 -10.16 16.45 5.20 0.09 -10.07 16 10 C -0.26 -3.07 6.37 -37.34 -0.24 -3.31 16 11 C -0.02 -0.22 9.47 -40.52 -0.38 -0.61 16 12 C -0.16 -1.52 5.82 -106.51 -0.62 -2.14 16 13 C 0.58 5.78 8.06 -12.56 -0.10 5.68 16 14 N -0.85 -4.18 8.84 30.41 0.27 -3.91 16 15 O -0.53 -7.72 17.52 5.26 0.09 -7.62 16 16 C -0.21 -1.27 10.41 30.16 0.31 -0.95 16 17 S 0.25 1.78 22.09 -107.50 -2.37 -0.60 16 18 C -0.15 -2.90 5.65 -26.60 -0.15 -3.06 16 19 C 0.17 4.18 5.29 -3.71 -0.02 4.16 16 20 N -0.59 -14.17 2.99 -164.77 -0.49 -14.66 16 21 C -0.25 -6.56 8.60 -15.06 -0.13 -6.69 16 22 H 0.07 1.79 6.21 -52.49 -0.33 1.47 16 23 C 0.00 0.04 4.96 -17.43 -0.09 -0.05 16 24 N -0.90 -26.06 11.14 55.49 0.62 -25.44 16 25 Si 0.90 21.40 29.58 -169.99 -5.03 16.38 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H 0.06 1.25 7.62 -51.93 -0.40 0.85 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.97 7.45 -51.93 -0.39 0.58 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.39 4.30 7.68 -40.82 -0.31 3.98 16 35 H 0.17 2.29 7.95 -52.48 -0.42 1.87 16 36 H 0.40 0.65 7.29 -40.82 -0.30 0.35 16 37 H 0.41 1.53 8.93 -40.82 -0.36 1.17 16 38 H 0.18 0.34 6.99 -52.48 -0.37 -0.03 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.09 2.45 6.06 -51.93 -0.31 2.14 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 365.13 15.07 5.50 5.50 Total: -1.00 -34.79 365.13 -9.03 -43.81 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -5.67 Total: 3.92 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -1.75 Total: 3.05 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: 0.11 Total: -54.36 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: 0.18 Total: -17.69 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.38 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.37 Total: -0.60 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.79 -9.03 -43.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948069623.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.444 kcal (2) G-P(sol) polarization free energy of solvation -34.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds