Wall clock time and date at job start Tue Mar 31 2020 20:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.58911 * 2 1 4 4 C 1.53202 * 109.58236 * 120.42361 * 2 1 3 5 5 C 1.53034 * 109.31182 * 174.42429 * 4 2 1 6 6 H 1.09004 * 109.46383 * 58.65348 * 5 4 2 7 7 N 1.46494 * 109.46226 * 178.62711 * 5 4 2 8 8 C 1.34779 * 120.00453 * 205.00078 * 7 5 4 9 9 O 1.21681 * 119.99479 * 359.97438 * 8 7 5 10 10 C 1.46735 * 120.00187 * 180.02562 * 8 7 5 11 11 C 1.34875 * 125.05570 * 179.97438 * 10 8 7 12 12 C 1.38936 * 113.65282 * 179.97438 * 11 10 8 13 13 C 1.47339 * 122.96185 * 180.02562 * 12 11 10 14 14 N 1.34766 * 120.00063 * 180.02562 * 13 12 11 15 15 O 1.21621 * 119.99573 * 359.97438 * 13 12 11 16 16 C 1.36664 * 114.07882 * 359.97438 * 12 11 10 17 17 S 1.70595 * 110.52667 * 359.75282 * 16 12 11 18 18 C 1.53083 * 109.65954 * 298.70013 * 5 4 2 19 19 C 1.53192 * 109.29551 * 61.15055 * 18 5 4 20 20 N 1.46922 * 109.59015 * 239.70764 * 2 1 3 21 21 C 1.36934 * 120.62896 * 6.63706 * 20 2 1 22 22 H 1.08008 * 119.99891 * 330.84260 * 21 20 2 23 23 C 1.38811 * 120.00472 * 150.85009 * 21 20 2 24 24 N 1.31620 * 120.00425 * 160.74821 * 23 21 20 25 25 Si 1.86800 * 119.99765 * 340.75359 * 23 21 20 26 26 H 1.48494 * 109.47321 * 92.23651 * 25 23 21 27 27 H 1.48501 * 109.47194 * 212.24230 * 25 23 21 28 28 H 1.48509 * 109.46983 * 332.23454 * 25 23 21 29 29 H 1.08997 * 109.47183 * 180.28242 * 1 2 3 30 30 H 1.08998 * 109.47220 * 300.29122 * 1 2 3 31 31 H 1.09003 * 109.46369 * 60.28882 * 1 2 3 32 32 H 1.09006 * 109.49496 * 294.37175 * 4 2 1 33 33 H 1.08996 * 109.49903 * 54.46812 * 4 2 1 34 34 H 0.97006 * 119.99754 * 24.99778 * 7 5 4 35 35 H 1.07999 * 123.17304 * 359.95588 * 11 10 8 36 36 H 0.96999 * 120.00577 * 359.97438 * 14 13 12 37 37 H 0.97001 * 119.99810 * 179.97438 * 14 13 12 38 38 H 1.08001 * 124.73283 * 180.02562 * 16 12 11 39 39 H 1.08996 * 109.38388 * 301.28122 * 18 5 4 40 40 H 1.08995 * 109.62347 * 181.16926 * 18 5 4 41 41 H 1.09000 * 109.58776 * 185.72228 * 19 18 5 42 42 H 1.09002 * 109.58351 * 65.43787 * 19 18 5 43 43 H 0.96998 * 120.00548 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0435 -0.7309 1.2447 5 6 3.5674 -0.8494 1.1693 6 1 4.0061 0.1460 1.0997 7 7 4.0650 -1.5189 2.3736 8 6 5.3292 -1.3059 2.7895 9 8 6.0574 -0.5579 2.1643 10 6 5.8278 -1.9769 3.9954 11 6 7.0704 -1.8386 4.5013 12 6 7.2893 -2.5836 5.6534 13 6 8.5735 -2.5842 6.3757 14 7 8.7205 -3.3304 7.4882 15 8 9.5012 -1.9121 5.9672 16 6 6.2081 -3.3148 6.0584 17 16 4.8922 -3.0733 5.0000 18 6 3.9602 -1.6642 -0.0657 19 6 3.4651 -0.9455 -1.3247 20 7 2.0226 -0.6982 -1.1952 21 6 1.1539 -1.1101 -2.1702 22 1 0.1365 -1.3666 -1.9138 23 6 1.5807 -1.1981 -3.4882 24 7 0.9080 -1.9306 -4.3503 25 14 3.1099 -0.2769 -4.0381 26 1 4.2951 -1.1616 -3.9058 27 1 2.9560 0.1357 -5.4563 28 1 3.2941 0.9278 -3.1894 29 1 -0.3633 -1.0276 0.0051 30 1 -0.3633 0.5183 0.8873 31 1 -0.3632 0.5094 -0.8926 32 1 1.7659 -0.1693 2.1367 33 1 1.6029 -1.7268 1.2894 34 1 3.4846 -2.1155 2.8718 35 1 7.8242 -1.2085 4.0528 36 1 7.9808 -3.8668 7.8138 37 1 9.5661 -3.3311 7.9635 38 1 6.1881 -3.9527 6.9297 39 1 3.5036 -2.6522 -0.0075 40 1 5.0446 -1.7658 -0.1075 41 1 3.6519 -1.5692 -2.1989 42 1 3.9901 0.0035 -1.4340 43 1 1.2060 -1.9918 -5.2714 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948069624.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:20 Heat of formation + Delta-G solvation = -19.220156 kcal Electronic energy + Delta-G solvation = -26441.765324 eV Core-core repulsion = 22614.086440 eV Total energy + Delta-G solvation = -3827.678885 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.40410 -39.81923 -38.09596 -37.06549 -34.80036 -34.20789 -32.44718 -31.85311 -30.73479 -29.65391 -26.66405 -25.99721 -24.89204 -23.44681 -22.59295 -21.05575 -20.46217 -19.72735 -19.43806 -18.85848 -17.52689 -17.37778 -16.47364 -16.12434 -15.82798 -15.38549 -15.24066 -14.89907 -14.70217 -14.52456 -13.84865 -13.76484 -13.61862 -13.42514 -13.38118 -13.09106 -12.90780 -12.50596 -11.97479 -11.85634 -11.70895 -11.38371 -11.18548 -11.06311 -10.62299 -10.52003 -10.41481 -10.21704 -10.19097 -10.18994 -10.00779 -9.72551 -9.46398 -9.40608 -9.12191 -8.90024 -8.60206 -6.95111 -5.93290 -3.31332 -0.07009 0.90021 1.27422 1.31650 2.81478 2.91698 3.12968 3.17942 3.36392 3.52122 3.55620 4.25844 4.52214 4.55445 4.62785 4.72399 4.86783 5.10295 5.26916 5.29508 5.37496 5.57977 5.60020 5.73492 5.78764 5.95201 5.98282 6.06313 6.18833 6.23594 6.29058 6.34009 6.38028 6.47889 6.59623 6.67243 6.77503 6.81873 6.94013 7.03518 7.41874 7.79095 7.98299 8.09450 8.35909 8.94747 9.73978 10.11240 11.22153 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.022858 B = 0.002510 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.670783 B =11153.536096 C =11779.829969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.175 3.825 3 H 0.033 0.967 4 C -0.136 4.136 5 C 0.151 3.849 6 H 0.086 0.914 7 N -0.718 5.718 8 C 0.586 3.414 9 O -0.521 6.521 10 C -0.261 4.261 11 C -0.017 4.017 12 C -0.162 4.162 13 C 0.583 3.417 14 N -0.850 5.850 15 O -0.533 6.533 16 C -0.207 4.207 17 S 0.253 5.747 18 C -0.141 4.141 19 C 0.129 3.871 20 N -0.603 5.603 21 C -0.259 4.259 22 H 0.092 0.908 23 C 0.024 3.976 24 N -0.910 5.910 25 Si 0.880 3.120 26 H -0.288 1.288 27 H -0.304 1.304 28 H -0.270 1.270 29 H 0.058 0.942 30 H 0.040 0.960 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.393 0.607 35 H 0.165 0.835 36 H 0.400 0.600 37 H 0.407 0.593 38 H 0.176 0.824 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.027 0.973 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.350 -5.454 26.667 28.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.068 3.932 3 H 0.050 0.950 4 C -0.176 4.176 5 C 0.048 3.952 6 H 0.104 0.896 7 N -0.368 5.368 8 C 0.370 3.630 9 O -0.398 6.398 10 C -0.382 4.382 11 C -0.047 4.047 12 C -0.180 4.180 13 C 0.367 3.633 14 N -0.414 5.414 15 O -0.410 6.410 16 C -0.347 4.347 17 S 0.521 5.479 18 C -0.182 4.182 19 C 0.003 3.997 20 N -0.327 5.327 21 C -0.387 4.387 22 H 0.109 0.891 23 C -0.174 4.174 24 N -0.553 5.553 25 Si 0.711 3.289 26 H -0.216 1.216 27 H -0.232 1.232 28 H -0.195 1.195 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.227 0.773 35 H 0.182 0.818 36 H 0.228 0.772 37 H 0.238 0.762 38 H 0.194 0.806 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.045 0.955 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.787 -5.006 25.536 26.892 hybrid contribution 2.150 0.195 0.414 2.198 sum 8.936 -4.811 25.950 27.864 Atomic orbital electron populations 1.21804 0.94912 1.01980 1.00642 1.20374 0.93790 0.93382 0.85634 0.94969 1.22395 0.93167 1.02196 0.99815 1.21087 0.94659 0.96733 0.82729 0.89568 1.46166 1.12569 1.48663 1.29407 1.16941 0.82250 0.81183 0.82610 1.90866 1.56185 1.36819 1.55963 1.24357 0.99817 1.09766 1.04227 1.20352 0.95750 0.96221 0.92423 1.19043 0.95260 1.04028 0.99711 1.17611 0.86731 0.78874 0.80113 1.43659 1.18985 1.49726 1.29080 1.90878 1.41348 1.41927 1.66808 1.26087 0.98362 1.04607 1.05642 1.83083 1.11804 1.37915 1.15130 1.22414 1.00215 0.99997 0.95557 1.21317 0.85132 0.97310 0.95960 1.44491 1.01982 1.65709 1.20510 1.18909 0.95749 1.38386 0.85650 0.89068 1.25316 0.97588 0.98704 0.95833 1.69812 1.41352 1.39553 1.04555 0.86998 0.83395 0.81571 0.76981 1.21607 1.23233 1.19475 0.92334 0.94053 0.91505 0.92060 0.91217 0.77305 0.81761 0.77174 0.76199 0.80633 0.91533 0.92219 0.90620 0.95464 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 7.94 37.16 0.30 -2.06 16 2 C 0.18 3.26 3.50 -67.59 -0.24 3.03 16 3 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.14 -2.04 4.84 -26.61 -0.13 -2.17 16 5 C 0.15 2.39 2.41 -67.87 -0.16 2.23 16 6 H 0.09 1.51 7.58 -51.93 -0.39 1.12 16 7 N -0.72 -9.32 5.07 -55.04 -0.28 -9.60 16 8 C 0.59 8.41 7.75 -12.83 -0.10 8.31 16 9 O -0.52 -9.60 16.45 5.21 0.09 -9.52 16 10 C -0.26 -2.92 6.37 -37.34 -0.24 -3.15 16 11 C -0.02 -0.19 9.47 -40.52 -0.38 -0.58 16 12 C -0.16 -1.45 5.82 -106.51 -0.62 -2.07 16 13 C 0.58 5.55 8.06 -12.56 -0.10 5.45 16 14 N -0.85 -3.90 8.84 30.41 0.27 -3.63 16 15 O -0.53 -7.51 17.52 5.26 0.09 -7.42 16 16 C -0.21 -1.16 10.41 30.16 0.31 -0.85 16 17 S 0.25 1.66 22.09 -107.50 -2.37 -0.72 16 18 C -0.14 -2.59 5.66 -26.59 -0.15 -2.74 16 19 C 0.13 2.84 4.20 -3.71 -0.02 2.82 16 20 N -0.60 -13.78 2.75 -164.77 -0.45 -14.24 16 21 C -0.26 -6.92 9.04 -15.06 -0.14 -7.06 16 22 H 0.09 2.56 6.40 -52.48 -0.34 2.22 16 23 C 0.02 0.70 5.24 -17.43 -0.09 0.61 16 24 N -0.91 -27.53 13.97 55.49 0.78 -26.75 16 25 Si 0.88 22.57 24.34 -169.99 -4.14 18.43 16 26 H -0.29 -7.23 6.62 56.52 0.37 -6.86 16 27 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 28 H -0.27 -6.84 6.63 56.52 0.37 -6.47 16 29 H 0.06 1.05 7.45 -51.93 -0.39 0.66 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.28 7.62 -51.93 -0.40 0.88 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.39 3.95 7.68 -40.82 -0.31 3.64 16 35 H 0.16 2.18 7.95 -52.49 -0.42 1.76 16 36 H 0.40 0.52 7.29 -40.82 -0.30 0.23 16 37 H 0.41 1.42 8.93 -40.82 -0.36 1.05 16 38 H 0.18 0.27 6.99 -52.49 -0.37 -0.10 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.08 1.83 4.62 -51.93 -0.24 1.59 16 42 H 0.03 0.61 7.02 -51.93 -0.36 0.25 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 LS Contribution 358.79 15.07 5.41 5.41 Total: -1.00 -35.86 358.79 -7.97 -43.83 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -5.60 Total: 2.44 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -1.76 Total: 1.77 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.31 Total: -54.22 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: 0.18 Total: -16.94 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.14 Total: 18.43 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.37 Total: -0.72 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.86 -7.97 -43.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948069624.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.610 kcal (2) G-P(sol) polarization free energy of solvation -35.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds