Wall clock time and date at job start Tue Mar 31 2020 20:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.58911 * 2 1 4 4 C 1.53202 * 109.58236 * 120.42361 * 2 1 3 5 5 C 1.53034 * 109.31182 * 174.42429 * 4 2 1 6 6 H 1.09004 * 109.46383 * 58.65348 * 5 4 2 7 7 N 1.46494 * 109.46226 * 178.62711 * 5 4 2 8 8 C 1.34779 * 120.00453 * 205.00078 * 7 5 4 9 9 O 1.21681 * 119.99479 * 359.97438 * 8 7 5 10 10 C 1.46735 * 120.00187 * 180.02562 * 8 7 5 11 11 C 1.34875 * 125.05570 * 179.97438 * 10 8 7 12 12 C 1.38936 * 113.65282 * 179.97438 * 11 10 8 13 13 C 1.47339 * 122.96185 * 180.02562 * 12 11 10 14 14 N 1.34766 * 120.00063 * 180.02562 * 13 12 11 15 15 O 1.21621 * 119.99573 * 359.97438 * 13 12 11 16 16 C 1.36664 * 114.07882 * 359.97438 * 12 11 10 17 17 S 1.70595 * 110.52667 * 359.75282 * 16 12 11 18 18 C 1.53083 * 109.65954 * 298.70013 * 5 4 2 19 19 C 1.53192 * 109.29551 * 61.15055 * 18 5 4 20 20 N 1.46922 * 109.59015 * 239.70764 * 2 1 3 21 21 C 1.36934 * 120.62896 * 6.63706 * 20 2 1 22 22 H 1.08008 * 119.99891 * 330.84260 * 21 20 2 23 23 C 1.38811 * 120.00472 * 150.85009 * 21 20 2 24 24 N 1.31620 * 120.00425 * 160.74821 * 23 21 20 25 25 Si 1.86800 * 119.99765 * 340.75359 * 23 21 20 26 26 H 1.48494 * 109.47321 * 92.23651 * 25 23 21 27 27 H 1.48501 * 109.47194 * 212.24230 * 25 23 21 28 28 H 1.48509 * 109.46983 * 332.23454 * 25 23 21 29 29 H 1.08997 * 109.47183 * 180.28242 * 1 2 3 30 30 H 1.08998 * 109.47220 * 300.29122 * 1 2 3 31 31 H 1.09003 * 109.46369 * 60.28882 * 1 2 3 32 32 H 1.09006 * 109.49496 * 294.37175 * 4 2 1 33 33 H 1.08996 * 109.49903 * 54.46812 * 4 2 1 34 34 H 0.97006 * 119.99754 * 24.99778 * 7 5 4 35 35 H 1.07999 * 123.17304 * 359.95588 * 11 10 8 36 36 H 0.96999 * 120.00577 * 359.97438 * 14 13 12 37 37 H 0.97001 * 119.99810 * 179.97438 * 14 13 12 38 38 H 1.08001 * 124.73283 * 180.02562 * 16 12 11 39 39 H 1.08996 * 109.38388 * 301.28122 * 18 5 4 40 40 H 1.08995 * 109.62347 * 181.16926 * 18 5 4 41 41 H 1.09000 * 109.58776 * 185.72228 * 19 18 5 42 42 H 1.09002 * 109.58351 * 65.43787 * 19 18 5 43 43 H 0.96998 * 120.00548 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0435 -0.7309 1.2447 5 6 3.5674 -0.8494 1.1693 6 1 4.0061 0.1460 1.0997 7 7 4.0650 -1.5189 2.3736 8 6 5.3292 -1.3059 2.7895 9 8 6.0574 -0.5579 2.1643 10 6 5.8278 -1.9769 3.9954 11 6 7.0704 -1.8386 4.5013 12 6 7.2893 -2.5836 5.6534 13 6 8.5735 -2.5842 6.3757 14 7 8.7205 -3.3304 7.4882 15 8 9.5012 -1.9121 5.9672 16 6 6.2081 -3.3148 6.0584 17 16 4.8922 -3.0733 5.0000 18 6 3.9602 -1.6642 -0.0657 19 6 3.4651 -0.9455 -1.3247 20 7 2.0226 -0.6982 -1.1952 21 6 1.1539 -1.1101 -2.1702 22 1 0.1365 -1.3666 -1.9138 23 6 1.5807 -1.1981 -3.4882 24 7 0.9080 -1.9306 -4.3503 25 14 3.1099 -0.2769 -4.0381 26 1 4.2951 -1.1616 -3.9058 27 1 2.9560 0.1357 -5.4563 28 1 3.2941 0.9278 -3.1894 29 1 -0.3633 -1.0276 0.0051 30 1 -0.3633 0.5183 0.8873 31 1 -0.3632 0.5094 -0.8926 32 1 1.7659 -0.1693 2.1367 33 1 1.6029 -1.7268 1.2894 34 1 3.4846 -2.1155 2.8718 35 1 7.8242 -1.2085 4.0528 36 1 7.9808 -3.8668 7.8138 37 1 9.5661 -3.3311 7.9635 38 1 6.1881 -3.9527 6.9297 39 1 3.5036 -2.6522 -0.0075 40 1 5.0446 -1.7658 -0.1075 41 1 3.6519 -1.5692 -2.1989 42 1 3.9901 0.0035 -1.4340 43 1 1.2060 -1.9918 -5.2714 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948069624.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:19 Heat of formation + Delta-G solvation = -48.980647 kcal Electronic energy + Delta-G solvation = -26443.055836 eV Core-core repulsion = 22614.086440 eV Total energy + Delta-G solvation = -3828.969396 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.32621 -40.79357 -39.51951 -37.91297 -36.22769 -34.82753 -34.27156 -33.37096 -32.19914 -30.69112 -28.13113 -26.85562 -26.35645 -24.72332 -24.10018 -22.21528 -21.68939 -21.07832 -20.18067 -19.81757 -18.44646 -18.13540 -18.03728 -17.50822 -16.92019 -16.54098 -16.36689 -16.32259 -15.86110 -15.60466 -15.38118 -14.97715 -14.89402 -14.81855 -14.36112 -14.16655 -13.93767 -13.80497 -13.71603 -13.50875 -12.89548 -12.73999 -12.64591 -12.39377 -12.25443 -12.03821 -11.89267 -11.75129 -11.55779 -11.46392 -11.26923 -11.11633 -10.76680 -10.72472 -10.30743 -10.01655 -9.66793 -8.89873 -8.13007 -5.44877 -0.72199 0.27691 0.52358 0.63669 1.28473 1.39534 1.46673 1.88624 1.94367 2.31313 2.42506 2.56583 3.06253 3.29902 3.61509 3.77899 3.89495 3.93502 4.03099 4.08701 4.18276 4.22070 4.43725 4.54678 4.57882 4.60679 4.70466 4.81102 4.90319 4.94422 4.97835 5.00247 5.06409 5.06721 5.18028 5.38366 5.48823 5.58827 5.84206 5.93437 6.22042 6.38359 6.40186 6.94514 7.04752 7.27235 7.66402 8.07746 9.06211 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.022858 B = 0.002510 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.670783 B =11153.536096 C =11779.829969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.163 3.837 3 H 0.034 0.966 4 C -0.121 4.121 5 C 0.159 3.841 6 H 0.069 0.931 7 N -0.703 5.703 8 C 0.584 3.416 9 O -0.574 6.574 10 C -0.302 4.302 11 C -0.027 4.027 12 C -0.191 4.191 13 C 0.580 3.420 14 N -0.823 5.823 15 O -0.595 6.595 16 C -0.171 4.171 17 S 0.341 5.659 18 C -0.131 4.131 19 C 0.126 3.874 20 N -0.614 5.614 21 C -0.229 4.229 22 H 0.076 0.924 23 C -0.032 4.032 24 N -0.955 5.955 25 Si 0.929 3.071 26 H -0.285 1.285 27 H -0.313 1.313 28 H -0.268 1.268 29 H 0.049 0.951 30 H 0.083 0.917 31 H 0.039 0.961 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.411 0.589 35 H 0.128 0.872 36 H 0.419 0.581 37 H 0.414 0.586 38 H 0.228 0.772 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.021 0.979 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.339 -7.051 31.269 32.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.057 3.943 3 H 0.051 0.949 4 C -0.160 4.160 5 C 0.055 3.945 6 H 0.087 0.913 7 N -0.354 5.354 8 C 0.372 3.628 9 O -0.455 6.455 10 C -0.422 4.422 11 C -0.059 4.059 12 C -0.208 4.208 13 C 0.364 3.636 14 N -0.388 5.388 15 O -0.476 6.476 16 C -0.311 4.311 17 S 0.609 5.391 18 C -0.171 4.171 19 C 0.000 4.000 20 N -0.340 5.340 21 C -0.359 4.359 22 H 0.094 0.906 23 C -0.226 4.226 24 N -0.602 5.602 25 Si 0.760 3.240 26 H -0.212 1.212 27 H -0.242 1.242 28 H -0.193 1.193 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.118 0.882 33 H 0.097 0.903 34 H 0.249 0.751 35 H 0.146 0.854 36 H 0.252 0.748 37 H 0.247 0.753 38 H 0.245 0.755 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.039 0.961 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.754 -6.645 30.252 31.503 hybrid contribution 2.387 0.623 -0.822 2.601 sum 8.141 -6.022 29.430 31.123 Atomic orbital electron populations 1.21733 0.93785 1.01663 1.01431 1.20713 0.94828 0.93508 0.85228 0.94855 1.22225 0.91880 1.02761 0.99144 1.20785 0.95378 0.95597 0.82758 0.91296 1.45838 1.12531 1.48597 1.28446 1.17378 0.81910 0.80431 0.83119 1.90834 1.57497 1.39237 1.57950 1.24056 1.00945 1.12543 1.04646 1.20262 0.95439 0.96525 0.93716 1.18841 0.96380 1.05866 0.99726 1.17798 0.86277 0.78654 0.80857 1.43431 1.20084 1.48080 1.27170 1.90851 1.43235 1.44833 1.68719 1.26694 0.96497 1.02081 1.05811 1.82784 1.09667 1.34240 1.12404 1.22241 0.99736 1.00022 0.95114 1.21243 0.84895 0.96922 0.96973 1.44672 1.01813 1.66413 1.21063 1.18940 0.95469 1.35364 0.86143 0.90636 1.25809 1.00065 1.00313 0.96455 1.69909 1.43478 1.42068 1.04760 0.86188 0.81280 0.80631 0.75905 1.21232 1.24224 1.19262 0.93183 0.89813 0.94174 0.88249 0.90323 0.75148 0.85409 0.74826 0.75308 0.75513 0.91135 0.92741 0.93145 0.96125 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 7.94 71.98 0.57 -3.60 16 2 C 0.16 5.74 3.50 44.98 0.16 5.90 16 3 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.12 -3.21 4.84 30.67 0.15 -3.06 16 5 C 0.16 4.76 2.41 45.03 0.11 4.87 16 6 H 0.07 2.36 7.58 -2.39 -0.02 2.35 16 7 N -0.70 -16.65 5.07 -446.27 -2.26 -18.91 16 8 C 0.58 16.47 7.75 86.46 0.67 17.14 16 9 O -0.57 -21.98 16.45 -4.29 -0.07 -22.05 16 10 C -0.30 -6.33 6.37 23.72 0.15 -6.18 16 11 C -0.03 -0.63 9.47 21.66 0.21 -0.43 16 12 C -0.19 -3.06 5.82 -21.08 -0.12 -3.18 16 13 C 0.58 10.40 8.06 86.64 0.70 11.10 16 14 N -0.82 -5.10 8.84 -175.95 -1.56 -6.66 16 15 O -0.59 -17.48 17.52 -4.10 -0.07 -17.55 16 16 C -0.17 -1.05 10.41 67.45 0.70 -0.35 16 17 S 0.34 2.85 22.09 -56.49 -1.25 1.60 16 18 C -0.13 -4.71 5.66 30.69 0.17 -4.53 16 19 C 0.13 5.55 4.20 86.36 0.36 5.91 16 20 N -0.61 -27.87 2.75 -675.21 -1.86 -29.73 16 21 C -0.23 -12.41 9.04 84.03 0.76 -11.65 16 22 H 0.08 4.29 6.40 -2.91 -0.02 4.28 16 23 C -0.03 -1.86 5.24 84.86 0.44 -1.41 16 24 N -0.96 -59.57 13.97 21.65 0.30 -59.27 16 25 Si 0.93 48.10 24.34 68.60 1.67 49.77 16 26 H -0.28 -14.38 6.62 99.48 0.66 -13.72 16 27 H -0.31 -16.51 7.11 99.48 0.71 -15.81 16 28 H -0.27 -13.54 6.63 99.48 0.66 -12.88 16 29 H 0.05 1.70 7.45 -2.39 -0.02 1.68 16 30 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.04 1.50 7.62 -2.39 -0.02 1.48 16 32 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.41 6.65 7.68 -92.70 -0.71 5.94 16 35 H 0.13 3.83 7.95 -2.91 -0.02 3.81 16 36 H 0.42 -0.94 7.29 -92.71 -0.68 -1.62 16 37 H 0.41 1.86 8.93 -92.71 -0.83 1.04 16 38 H 0.23 -1.06 6.99 -2.91 -0.02 -1.09 16 39 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.05 2.47 4.62 -2.39 -0.01 2.46 16 42 H 0.02 0.94 7.02 -2.39 -0.02 0.93 16 43 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -85.82 358.79 -1.28 -87.10 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -1.22 Total: 5.17 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 5.03 Total: 10.52 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -5.37 Total: -114.57 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -0.14 Total: -39.60 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 1.67 Total: 49.77 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -1.25 Total: 1.60 kcal Total: -85.82 -1.28 -87.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948069624.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.124 kcal (2) G-P(sol) polarization free energy of solvation -85.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds