Wall clock time and date at job start Tue Mar 31 2020 20:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99748 * 2 1 4 4 H 1.08999 * 109.47978 * 29.99520 * 3 2 1 5 5 C 1.53007 * 109.46944 * 269.99617 * 3 2 1 6 6 C 1.50704 * 109.47241 * 150.00225 * 3 2 1 7 7 N 1.28649 * 124.71902 * 225.24668 * 6 3 2 8 8 C 1.33559 * 115.76435 * 180.21926 * 7 6 3 9 9 C 1.47266 * 123.13986 * 179.83164 * 8 7 6 10 10 O 1.21628 * 119.99655 * 179.73720 * 9 8 7 11 11 N 1.34777 * 120.00110 * 359.73213 * 9 8 7 12 12 C 1.46497 * 119.99971 * 180.02562 * 11 9 8 13 13 H 1.08998 * 115.51472 * 350.41099 * 12 11 9 14 14 C 1.53000 * 117.43937 * 205.00176 * 12 11 9 15 15 H 1.08998 * 119.54230 * 4.15343 * 14 12 11 16 16 C 1.54393 * 118.12081 * 159.25319 * 14 12 11 17 17 N 1.51835 * 102.86455 * 88.01977 * 16 14 12 18 18 C 1.36934 * 127.60929 * 140.54838 * 17 16 14 19 19 H 1.07998 * 119.99462 * 194.12218 * 18 17 16 20 20 C 1.38806 * 120.00292 * 14.12360 * 18 17 16 21 21 N 1.31622 * 119.99988 * 8.84322 * 20 18 17 22 22 Si 1.86796 * 120.00137 * 188.84843 * 20 18 17 23 23 H 1.48506 * 109.47458 * 93.97614 * 22 20 18 24 24 H 1.48500 * 109.47402 * 213.97329 * 22 20 18 25 25 H 1.48500 * 109.47186 * 333.97637 * 22 20 18 26 26 C 1.48146 * 104.54936 * 320.26480 * 17 16 14 27 27 C 1.52993 * 117.40813 * 135.77345 * 12 11 9 28 28 H 1.09000 * 119.54429 * 355.89333 * 27 12 11 29 29 C 1.35210 * 113.71484 * 359.56441 * 8 7 6 30 30 S 1.70769 * 124.72041 * 45.01836 * 6 3 2 31 31 H 1.09001 * 109.46921 * 60.00364 * 1 2 3 32 32 H 1.08992 * 109.47129 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47132 * 300.00727 * 1 2 3 34 34 H 1.08999 * 109.47114 * 179.97438 * 5 3 2 35 35 H 1.08997 * 109.47187 * 300.00526 * 5 3 2 36 36 H 1.09005 * 109.46867 * 59.99962 * 5 3 2 37 37 H 0.96996 * 119.99648 * 359.97438 * 11 9 8 38 38 H 1.08997 * 110.40350 * 207.98776 * 16 14 12 39 39 H 1.09000 * 110.40856 * 330.42456 * 16 14 12 40 40 H 0.97007 * 119.99966 * 180.02562 * 21 20 18 41 41 H 1.09000 * 110.41245 * 281.08099 * 26 17 16 42 42 H 1.09005 * 110.40531 * 158.64523 * 26 17 16 43 43 H 1.08001 * 125.58341 * 180.22991 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9995 0.5137 5 6 2.2177 1.7713 -1.4426 6 6 3.3387 1.2640 0.7104 7 7 3.7307 2.1252 1.5820 8 6 4.9454 1.9181 2.0971 9 6 5.5551 2.8041 3.1031 10 8 6.6643 2.5585 3.5374 11 7 4.8839 3.8872 3.5425 12 6 5.4906 4.7688 4.5428 13 1 6.4080 4.3986 5.0004 14 6 4.5471 5.5926 5.4215 15 1 3.4698 5.4540 5.3305 16 6 5.0883 6.1338 6.7624 17 7 5.6988 7.4667 6.3672 18 6 5.6555 8.6449 7.0636 19 1 5.9278 9.5699 6.5772 20 6 5.2617 8.6504 8.3947 21 7 5.0982 7.5135 9.0373 22 14 4.9637 10.2714 9.2739 23 1 3.5229 10.6215 9.1920 24 1 5.3614 10.1421 10.6988 25 1 5.7699 11.3393 8.6298 26 6 6.3558 7.2039 5.0657 27 6 5.3755 6.2772 4.3145 28 1 4.9153 6.6487 3.3989 29 6 5.5608 0.8159 1.6128 30 16 4.5308 0.0643 0.4744 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5140 0.8900 34 1 2.6606 2.7673 -1.4426 35 1 2.8829 1.0774 -1.9564 36 1 1.2568 1.8013 -1.9564 37 1 3.9995 4.0832 3.1958 38 1 4.2770 6.2482 7.4812 39 1 5.8569 5.4698 7.1578 40 1 4.8226 7.5173 9.9674 41 1 7.3120 6.7030 5.2168 42 1 6.4959 8.1346 4.5159 43 1 6.5424 0.4674 1.8984 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000959876365.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:45 Heat of formation + Delta-G solvation = 31.613605 kcal Electronic energy + Delta-G solvation = -25766.269492 eV Core-core repulsion = 21940.794925 eV Total energy + Delta-G solvation = -3825.474567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.72704 -39.35651 -38.60378 -37.85317 -34.36600 -32.99245 -32.54032 -30.25118 -29.94444 -27.38430 -27.11456 -26.44156 -25.41425 -24.00808 -21.87866 -21.15067 -20.41977 -19.94604 -19.19713 -18.84811 -16.97482 -16.86400 -16.70163 -16.52268 -15.95877 -15.86120 -15.29134 -14.72790 -14.59625 -14.16033 -13.95867 -13.59941 -13.44143 -13.21370 -13.17084 -12.81789 -12.70180 -12.23540 -12.19349 -12.14580 -11.59000 -11.51947 -11.43523 -10.99606 -10.81680 -10.44307 -10.40879 -10.21400 -10.17933 -10.13904 -10.04899 -9.95208 -9.67245 -9.25589 -9.18203 -8.72606 -8.30720 -6.85459 -5.76124 -3.09328 0.20580 0.90151 1.33853 1.68347 2.83823 3.19024 3.25702 3.40582 3.45583 3.47806 3.86820 4.32302 4.35819 4.49155 4.54010 4.59825 4.81829 4.90700 4.91415 4.98876 5.13480 5.18098 5.21799 5.22568 5.37946 5.41159 5.51307 5.59447 5.60187 5.81885 5.92438 6.16145 6.23690 6.49028 6.55342 6.71066 6.78690 6.92086 7.07034 7.33906 7.53840 7.62330 7.72224 8.15797 8.22087 9.09042 9.75493 10.52199 11.38806 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.020699 B = 0.002103 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.401840 B =13309.014233 C =13993.650648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.163 3.837 4 H 0.095 0.905 5 C -0.170 4.170 6 C 0.016 3.984 7 N -0.435 5.435 8 C 0.014 3.986 9 C 0.596 3.404 10 O -0.532 6.532 11 N -0.678 5.678 12 C 0.093 3.907 13 H 0.133 0.867 14 C -0.176 4.176 15 H 0.102 0.898 16 C 0.187 3.813 17 N -0.599 5.599 18 C -0.223 4.223 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.917 5.917 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.160 3.840 27 C -0.181 4.181 28 H 0.104 0.896 29 C -0.230 4.230 30 S 0.252 5.748 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.407 0.593 38 H 0.095 0.905 39 H 0.030 0.970 40 H 0.254 0.746 41 H 0.027 0.973 42 H 0.052 0.948 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.320 -17.714 -23.007 30.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.102 3.898 4 H 0.113 0.887 5 C -0.228 4.228 6 C -0.263 4.263 7 N -0.152 5.152 8 C -0.122 4.122 9 C 0.379 3.621 10 O -0.409 6.409 11 N -0.325 5.325 12 C -0.013 4.013 13 H 0.151 0.849 14 C -0.198 4.198 15 H 0.120 0.880 16 C 0.062 3.938 17 N -0.324 5.324 18 C -0.351 4.351 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.564 5.564 22 Si 0.743 3.257 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.033 3.967 27 C -0.203 4.203 28 H 0.122 0.878 29 C -0.372 4.372 30 S 0.509 5.491 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.243 0.757 38 H 0.113 0.887 39 H 0.048 0.952 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.070 0.930 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -7.742 -18.348 -22.907 30.353 hybrid contribution -0.535 1.722 0.972 2.048 sum -8.277 -16.626 -21.934 28.741 Atomic orbital electron populations 1.22868 0.79652 1.03374 1.00565 1.87897 1.20761 1.26314 1.95123 1.20300 0.88314 0.86175 0.95008 0.88744 1.22305 1.03427 1.02551 0.94535 1.26716 1.02078 0.96939 1.00573 1.66830 1.12863 1.27179 1.08344 1.20398 0.91252 0.97960 1.02583 1.16971 0.84645 0.80226 0.80277 1.90826 1.19070 1.73008 1.58001 1.45194 1.20575 1.24953 1.41815 1.21938 0.99502 0.87002 0.92855 0.84913 1.24611 0.97006 1.01469 0.96665 0.87964 1.21739 0.97314 0.84905 0.89829 1.46068 1.59868 1.07306 1.19158 1.19032 1.39987 0.84202 0.91911 0.90518 1.24863 1.02545 0.97135 0.95949 1.69885 1.52546 1.23820 1.10159 0.86090 0.77953 0.82679 0.78955 1.21627 1.21710 1.20558 1.21054 0.92647 0.95343 0.87665 1.24395 1.03914 0.92285 0.99668 0.87848 1.26780 1.07294 0.99880 1.03240 1.82896 1.05388 1.26066 1.34774 0.93494 0.89024 0.93405 0.90587 0.91251 0.90913 0.75728 0.88699 0.95185 0.93603 0.95529 0.92952 0.79064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.24 16 2 O -0.38 -2.86 10.17 -35.23 -0.36 -3.22 16 3 C 0.16 1.21 3.23 -27.88 -0.09 1.12 16 4 H 0.09 0.66 7.79 -51.93 -0.40 0.26 16 5 C -0.17 -0.94 9.51 37.16 0.35 -0.59 16 6 C 0.02 0.16 6.30 -13.61 -0.09 0.07 16 7 N -0.44 -5.24 10.12 -8.51 -0.09 -5.32 16 8 C 0.01 0.18 6.70 -84.52 -0.57 -0.39 16 9 C 0.60 9.57 7.80 -12.59 -0.10 9.47 16 10 O -0.53 -10.07 16.28 5.25 0.09 -9.99 16 11 N -0.68 -10.52 5.56 -54.94 -0.31 -10.83 16 12 C 0.09 1.66 5.97 -67.94 -0.41 1.25 16 13 H 0.13 2.62 7.40 -51.93 -0.38 2.24 16 14 C -0.18 -3.45 6.96 -89.22 -0.62 -4.07 16 15 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 16 C 0.19 4.56 5.91 -0.29 0.00 4.56 16 17 N -0.60 -15.62 3.45 -165.69 -0.57 -16.19 16 18 C -0.22 -6.29 10.37 -15.06 -0.16 -6.44 16 19 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 20 C -0.01 -0.23 5.43 -17.43 -0.09 -0.33 16 21 N -0.92 -27.13 10.79 55.49 0.60 -26.53 16 22 Si 0.91 22.16 29.56 -169.99 -5.03 17.14 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.16 3.46 7.05 -2.40 -0.02 3.44 16 27 C -0.18 -3.37 7.06 -89.22 -0.63 -4.00 16 28 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 29 C -0.23 -2.48 10.62 29.65 0.31 -2.17 16 30 S 0.25 2.07 22.73 -107.50 -2.44 -0.37 16 31 H 0.05 0.15 7.87 -51.93 -0.41 -0.25 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.22 8.09 -51.92 -0.42 -0.20 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.29 7.87 -51.93 -0.41 -0.11 16 37 H 0.41 5.62 8.35 -40.82 -0.34 5.28 16 38 H 0.09 2.55 6.57 -51.93 -0.34 2.21 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.19 1.86 8.03 -52.49 -0.42 1.44 16 LS Contribution 376.96 15.07 5.68 5.68 Total: -1.00 -33.27 376.96 -9.49 -42.76 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -6.06 Total: 3.69 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -1.00 Total: 3.18 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -0.36 Total: -58.87 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.27 Total: -13.21 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.14 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.44 Total: -0.37 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.27 -9.49 -42.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000959876365.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.375 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds