Wall clock time and date at job start Tue Mar 31 2020 20:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99748 * 2 1 4 4 H 1.08999 * 109.47978 * 29.99520 * 3 2 1 5 5 C 1.53007 * 109.46944 * 269.99617 * 3 2 1 6 6 C 1.50704 * 109.47241 * 150.00225 * 3 2 1 7 7 N 1.28649 * 124.71902 * 225.24668 * 6 3 2 8 8 C 1.33559 * 115.76435 * 180.21926 * 7 6 3 9 9 C 1.47266 * 123.13986 * 179.83164 * 8 7 6 10 10 O 1.21628 * 119.99655 * 179.73720 * 9 8 7 11 11 N 1.34777 * 120.00110 * 359.73213 * 9 8 7 12 12 C 1.46497 * 119.99971 * 180.02562 * 11 9 8 13 13 H 1.08998 * 115.51472 * 350.41099 * 12 11 9 14 14 C 1.53000 * 117.43937 * 205.00176 * 12 11 9 15 15 H 1.08998 * 119.54230 * 4.15343 * 14 12 11 16 16 C 1.54393 * 118.12081 * 159.25319 * 14 12 11 17 17 N 1.51835 * 102.86455 * 88.01977 * 16 14 12 18 18 C 1.36934 * 127.60929 * 140.54838 * 17 16 14 19 19 H 1.07998 * 119.99462 * 194.12218 * 18 17 16 20 20 C 1.38806 * 120.00292 * 14.12360 * 18 17 16 21 21 N 1.31622 * 119.99988 * 8.84322 * 20 18 17 22 22 Si 1.86796 * 120.00137 * 188.84843 * 20 18 17 23 23 H 1.48506 * 109.47458 * 93.97614 * 22 20 18 24 24 H 1.48500 * 109.47402 * 213.97329 * 22 20 18 25 25 H 1.48500 * 109.47186 * 333.97637 * 22 20 18 26 26 C 1.48146 * 104.54936 * 320.26480 * 17 16 14 27 27 C 1.52993 * 117.40813 * 135.77345 * 12 11 9 28 28 H 1.09000 * 119.54429 * 355.89333 * 27 12 11 29 29 C 1.35210 * 113.71484 * 359.56441 * 8 7 6 30 30 S 1.70769 * 124.72041 * 45.01836 * 6 3 2 31 31 H 1.09001 * 109.46921 * 60.00364 * 1 2 3 32 32 H 1.08992 * 109.47129 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47132 * 300.00727 * 1 2 3 34 34 H 1.08999 * 109.47114 * 179.97438 * 5 3 2 35 35 H 1.08997 * 109.47187 * 300.00526 * 5 3 2 36 36 H 1.09005 * 109.46867 * 59.99962 * 5 3 2 37 37 H 0.96996 * 119.99648 * 359.97438 * 11 9 8 38 38 H 1.08997 * 110.40350 * 207.98776 * 16 14 12 39 39 H 1.09000 * 110.40856 * 330.42456 * 16 14 12 40 40 H 0.97007 * 119.99966 * 180.02562 * 21 20 18 41 41 H 1.09000 * 110.41245 * 281.08099 * 26 17 16 42 42 H 1.09005 * 110.40531 * 158.64523 * 26 17 16 43 43 H 1.08001 * 125.58341 * 180.22991 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9995 0.5137 5 6 2.2177 1.7713 -1.4426 6 6 3.3387 1.2640 0.7104 7 7 3.7307 2.1252 1.5820 8 6 4.9454 1.9181 2.0971 9 6 5.5551 2.8041 3.1031 10 8 6.6643 2.5585 3.5374 11 7 4.8839 3.8872 3.5425 12 6 5.4906 4.7688 4.5428 13 1 6.4080 4.3986 5.0004 14 6 4.5471 5.5926 5.4215 15 1 3.4698 5.4540 5.3305 16 6 5.0883 6.1338 6.7624 17 7 5.6988 7.4667 6.3672 18 6 5.6555 8.6449 7.0636 19 1 5.9278 9.5699 6.5772 20 6 5.2617 8.6504 8.3947 21 7 5.0982 7.5135 9.0373 22 14 4.9637 10.2714 9.2739 23 1 3.5229 10.6215 9.1920 24 1 5.3614 10.1421 10.6988 25 1 5.7699 11.3393 8.6298 26 6 6.3558 7.2039 5.0657 27 6 5.3755 6.2772 4.3145 28 1 4.9153 6.6487 3.3989 29 6 5.5608 0.8159 1.6128 30 16 4.5308 0.0643 0.4744 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5140 0.8900 34 1 2.6606 2.7673 -1.4426 35 1 2.8829 1.0774 -1.9564 36 1 1.2568 1.8013 -1.9564 37 1 3.9995 4.0832 3.1958 38 1 4.2770 6.2482 7.4812 39 1 5.8569 5.4698 7.1578 40 1 4.8226 7.5173 9.9674 41 1 7.3120 6.7030 5.2168 42 1 6.4959 8.1346 4.5159 43 1 6.5424 0.4674 1.8984 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000959876365.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:44 Heat of formation + Delta-G solvation = 8.290096 kcal Electronic energy + Delta-G solvation = -25767.280875 eV Core-core repulsion = 21940.794925 eV Total energy + Delta-G solvation = -3826.485951 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.74414 -40.58979 -39.60009 -38.89761 -36.04378 -34.36839 -33.54918 -32.06736 -30.73288 -28.93585 -27.95797 -27.73446 -26.73250 -24.95321 -23.31091 -22.19619 -22.00688 -20.97688 -20.82993 -19.83973 -18.86417 -17.99406 -17.49272 -17.28123 -17.03614 -16.71427 -16.59053 -16.12843 -15.85186 -15.43617 -15.05898 -14.93135 -14.73557 -14.60132 -14.00520 -13.79463 -13.64479 -13.36175 -13.29911 -13.23259 -12.98320 -12.92055 -12.72137 -12.62372 -12.19410 -12.04942 -12.02669 -11.87311 -11.69621 -11.42826 -10.99256 -10.88219 -10.87112 -10.73695 -10.66290 -10.09960 -9.73230 -8.94187 -7.90708 -5.26607 -0.60843 0.16774 0.55224 0.71464 1.46940 1.48756 1.58137 1.88595 2.07846 2.32646 2.48889 2.82106 3.18019 3.30102 3.49707 3.57907 3.78454 3.87161 3.98502 4.04706 4.07968 4.09924 4.22239 4.33398 4.46221 4.52148 4.58626 4.61224 4.74169 4.77790 4.85803 4.87034 4.92711 4.96482 5.21921 5.23680 5.34251 5.42416 5.47234 5.62953 6.02261 6.10174 6.16893 6.48015 6.95045 6.99374 7.64600 8.44440 9.23855 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.020699 B = 0.002103 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.401840 B =13309.014233 C =13993.650648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.398 6.398 3 C 0.162 3.838 4 H 0.096 0.904 5 C -0.166 4.166 6 C 0.003 3.997 7 N -0.453 5.453 8 C -0.012 4.012 9 C 0.595 3.405 10 O -0.569 6.569 11 N -0.669 5.669 12 C 0.113 3.887 13 H 0.112 0.888 14 C -0.176 4.176 15 H 0.122 0.878 16 C 0.190 3.810 17 N -0.623 5.623 18 C -0.237 4.237 19 H 0.083 0.917 20 C -0.066 4.066 21 N -0.950 5.950 22 Si 0.982 3.018 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.267 1.267 26 C 0.153 3.847 27 C -0.163 4.163 28 H 0.133 0.867 29 C -0.236 4.236 30 S 0.328 5.672 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.418 0.582 38 H 0.065 0.935 39 H 0.005 0.995 40 H 0.250 0.750 41 H 0.021 0.979 42 H 0.065 0.935 43 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.641 -18.198 -25.757 32.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C 0.101 3.899 4 H 0.114 0.886 5 C -0.225 4.225 6 C -0.276 4.276 7 N -0.170 5.170 8 C -0.148 4.148 9 C 0.380 3.620 10 O -0.448 6.448 11 N -0.317 5.317 12 C 0.006 3.994 13 H 0.130 0.870 14 C -0.197 4.197 15 H 0.140 0.860 16 C 0.065 3.935 17 N -0.348 5.348 18 C -0.366 4.366 19 H 0.101 0.899 20 C -0.259 4.259 21 N -0.598 5.598 22 Si 0.810 3.190 23 H -0.212 1.212 24 H -0.222 1.222 25 H -0.191 1.191 26 C 0.028 3.972 27 C -0.184 4.184 28 H 0.151 0.849 29 C -0.379 4.379 30 S 0.586 5.414 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.256 0.744 38 H 0.084 0.916 39 H 0.023 0.977 40 H 0.059 0.941 41 H 0.038 0.962 42 H 0.084 0.916 43 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -9.088 -18.843 -25.718 33.152 hybrid contribution -0.106 1.726 1.736 2.450 sum -9.194 -17.118 -23.982 30.866 Atomic orbital electron populations 1.23053 0.78263 1.04398 1.01315 1.87859 1.22282 1.26267 1.95259 1.20414 0.87281 0.86408 0.95796 0.88609 1.22296 1.04508 1.02312 0.93337 1.27229 1.03414 0.96979 0.99950 1.66787 1.12450 1.28410 1.09337 1.20026 0.92528 0.98706 1.03529 1.17383 0.84181 0.80132 0.80276 1.90800 1.20693 1.73871 1.59447 1.45026 1.20964 1.24581 1.41118 1.21509 0.98155 0.87124 0.92630 0.86982 1.24295 0.98108 1.03001 0.94286 0.85976 1.21465 0.95651 0.84552 0.91831 1.46381 1.60803 1.07161 1.20475 1.19431 1.39399 0.85306 0.92458 0.89915 1.25737 1.02868 1.00514 0.96800 1.70087 1.53716 1.25927 1.10087 0.85009 0.77862 0.78908 0.77200 1.21195 1.22206 1.19126 1.21184 0.92871 0.96682 0.86472 1.24303 1.02310 0.92048 0.99761 0.84919 1.27048 1.08022 0.99418 1.03458 1.82658 1.02909 1.23714 1.32082 0.91902 0.87928 0.93524 0.90852 0.90957 0.89194 0.74402 0.91636 0.97719 0.94132 0.96168 0.91628 0.78490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.82 113.37 1.23 1.41 16 2 O -0.40 -4.99 10.17 -148.98 -1.52 -6.50 16 3 C 0.16 2.04 3.23 29.85 0.10 2.14 16 4 H 0.10 1.16 7.79 -2.39 -0.02 1.14 16 5 C -0.17 -1.40 9.51 71.98 0.68 -0.71 16 6 C 0.00 0.06 6.30 88.58 0.56 0.61 16 7 N -0.45 -10.27 10.12 -180.83 -1.83 -12.10 16 8 C -0.01 -0.32 6.70 40.56 0.27 -0.05 16 9 C 0.59 19.01 7.80 86.62 0.68 19.69 16 10 O -0.57 -21.85 16.28 -4.12 -0.07 -21.92 16 11 N -0.67 -20.26 5.56 -445.97 -2.48 -22.74 16 12 C 0.11 4.01 5.97 44.99 0.27 4.28 16 13 H 0.11 4.56 7.40 -2.39 -0.02 4.54 16 14 C -0.18 -6.86 6.96 -9.88 -0.07 -6.93 16 15 H 0.12 4.29 8.14 -2.39 -0.02 4.27 16 16 C 0.19 9.61 5.91 85.79 0.51 10.12 16 17 N -0.62 -33.06 3.45 -678.13 -2.34 -35.40 16 18 C -0.24 -13.51 10.37 84.03 0.87 -12.64 16 19 H 0.08 4.49 7.84 -2.91 -0.02 4.46 16 20 C -0.07 -3.79 5.43 84.86 0.46 -3.33 16 21 N -0.95 -58.01 10.79 21.65 0.23 -57.77 16 22 Si 0.98 46.08 29.56 68.60 2.03 48.11 16 23 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 24 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 C 0.15 6.63 7.05 86.54 0.61 7.24 16 27 C -0.16 -5.87 7.06 -9.89 -0.07 -5.94 16 28 H 0.13 4.07 8.14 -2.39 -0.02 4.05 16 29 C -0.24 -4.80 10.62 67.12 0.71 -4.09 16 30 S 0.33 4.59 22.73 -56.49 -1.28 3.31 16 31 H 0.06 0.24 7.87 -2.39 -0.02 0.22 16 32 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.05 0.34 8.09 -2.38 -0.02 0.32 16 34 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.09 0.45 7.87 -2.38 -0.02 0.43 16 37 H 0.42 10.94 8.35 -92.71 -0.77 10.16 16 38 H 0.07 3.68 6.57 -2.39 -0.02 3.67 16 39 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 41 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 43 H 0.20 3.64 8.03 -2.91 -0.02 3.62 16 Total: -1.00 -73.51 376.96 -0.18 -73.70 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.27 Total: 19.52 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 6.80 Total: 11.80 kcal Atomic # 7 Polarization: -121.59 SS G_CDS: -6.42 Total: -128.01 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -1.58 Total: -28.42 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Atomic # 16 Polarization: 4.59 SS G_CDS: -1.28 Total: 3.31 kcal Total: -73.51 -0.18 -73.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000959876365.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.990 kcal (2) G-P(sol) polarization free energy of solvation -73.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds