Wall clock time and date at job start Tue Mar 31 2020 20:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00303 * 2 1 4 4 H 1.08997 * 109.46872 * 330.00130 * 3 2 1 5 5 C 1.53008 * 109.47022 * 89.99431 * 3 2 1 6 6 C 1.50692 * 109.47464 * 209.99607 * 3 2 1 7 7 N 1.28650 * 124.71804 * 135.24942 * 6 3 2 8 8 C 1.33565 * 115.76267 * 180.23014 * 7 6 3 9 9 C 1.47265 * 123.13931 * 179.83332 * 8 7 6 10 10 O 1.21636 * 119.99946 * 179.73041 * 9 8 7 11 11 N 1.34775 * 120.00098 * 359.72041 * 9 8 7 12 12 C 1.46503 * 119.99972 * 179.97438 * 11 9 8 13 13 H 1.08992 * 115.49587 * 350.38600 * 12 11 9 14 14 C 1.52999 * 117.44096 * 205.00351 * 12 11 9 15 15 H 1.08997 * 120.26853 * 3.83225 * 14 12 11 16 16 C 1.54397 * 118.12107 * 160.81426 * 14 12 11 17 17 N 1.48145 * 104.61828 * 87.18833 * 16 14 12 18 18 C 1.36937 * 127.83537 * 140.41412 * 17 16 14 19 19 H 1.07997 * 120.00108 * 340.88378 * 18 17 16 20 20 C 1.38810 * 119.99670 * 160.88164 * 18 17 16 21 21 N 1.31621 * 120.00069 * 163.44057 * 20 18 17 22 22 Si 1.86800 * 120.00355 * 343.43599 * 20 18 17 23 23 H 1.48498 * 109.46932 * 85.38518 * 22 20 18 24 24 H 1.48500 * 109.47242 * 205.38451 * 22 20 18 25 25 H 1.48497 * 109.47099 * 325.38788 * 22 20 18 26 26 C 1.48147 * 104.32396 * 320.41760 * 17 16 14 27 27 C 1.52997 * 117.43822 * 135.76474 * 12 11 9 28 28 H 1.09002 * 120.26806 * 356.17774 * 27 12 11 29 29 C 1.35203 * 113.72141 * 359.55692 * 8 7 6 30 30 S 1.70778 * 124.72081 * 315.02726 * 6 3 2 31 31 H 1.09001 * 109.47274 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47099 * 300.00153 * 1 2 3 33 33 H 1.08995 * 109.46584 * 60.00080 * 1 2 3 34 34 H 1.09004 * 109.46427 * 60.00335 * 5 3 2 35 35 H 1.08997 * 109.46817 * 180.02562 * 5 3 2 36 36 H 1.08999 * 109.47274 * 300.00839 * 5 3 2 37 37 H 0.96998 * 120.00071 * 0.02562 * 11 9 8 38 38 H 1.09007 * 110.40356 * 328.40707 * 16 14 12 39 39 H 1.08998 * 110.50885 * 206.02707 * 16 14 12 40 40 H 0.96998 * 120.00628 * 180.02562 * 21 20 18 41 41 H 1.09004 * 110.40656 * 158.36879 * 26 17 16 42 42 H 1.08994 * 110.40487 * 280.79947 * 26 17 16 43 43 H 1.07995 * 125.58985 * 180.23171 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 -0.5138 5 6 2.2176 1.7714 1.4426 6 6 3.3387 1.2639 -0.7103 7 7 3.7345 2.1300 -1.5752 8 6 4.9447 1.9167 -2.0985 9 6 5.5548 2.8031 -3.1039 10 8 6.6638 2.5570 -3.5388 11 7 4.8842 3.8869 -3.5423 12 6 5.4913 4.7690 -4.5421 13 1 6.5420 4.5780 -4.7601 14 6 5.0160 6.2228 -4.5813 15 1 4.3001 6.5868 -3.8444 16 6 5.9171 7.2645 -5.2789 17 7 5.5131 7.2142 -6.7033 18 6 5.3731 8.2616 -7.5742 19 1 5.2592 9.2668 -7.1960 20 6 5.3776 8.0314 -8.9431 21 7 4.9261 8.9533 -9.7669 22 14 6.0244 6.4133 -9.6160 23 1 4.9376 5.4015 -9.6014 24 1 6.4982 6.6108 -11.0095 25 1 7.1514 5.9414 -8.7721 26 6 5.2949 5.7737 -6.9718 27 6 4.6058 5.2398 -5.6975 28 1 3.5842 4.8716 -5.7921 29 6 5.5599 0.8143 -1.6145 30 16 4.5303 0.0634 -0.4751 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3632 0.5138 -0.8900 34 1 2.8829 1.0774 1.9564 35 1 2.6606 2.7673 1.4425 36 1 1.2568 1.8014 1.9564 37 1 4.0000 4.0833 -3.1953 38 1 6.9669 6.9914 -5.1717 39 1 5.7400 8.2586 -4.8684 40 1 4.9289 8.7923 -10.7235 41 1 4.6464 5.6425 -7.8380 42 1 6.2475 5.2679 -7.1290 43 1 6.5410 0.4653 -1.9009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000959876367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:47 Heat of formation + Delta-G solvation = 36.113979 kcal Electronic energy + Delta-G solvation = -25886.791842 eV Core-core repulsion = 22061.512425 eV Total energy + Delta-G solvation = -3825.279416 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.82529 -39.57455 -38.78960 -38.08527 -34.68618 -33.05743 -32.62960 -30.82167 -30.06404 -27.79808 -27.42895 -26.58813 -25.48496 -24.04887 -21.90023 -21.25915 -20.67332 -20.13838 -19.63627 -18.97246 -17.11688 -16.91573 -16.79364 -16.62595 -16.11469 -15.98612 -15.38899 -15.10365 -14.75112 -14.27889 -13.99920 -13.66177 -13.56006 -13.50232 -13.26078 -12.95321 -12.86580 -12.50419 -12.29081 -12.23718 -12.21967 -11.71253 -11.63617 -11.22081 -11.02964 -10.74720 -10.47696 -10.30252 -10.25602 -10.15136 -10.03526 -10.01552 -9.56824 -9.33064 -9.31529 -8.81207 -8.55720 -7.12311 -5.93183 -3.27531 0.13457 0.83372 1.27099 1.59175 2.77206 3.05195 3.13803 3.34394 3.49642 3.51467 3.80416 4.09900 4.25781 4.48748 4.54013 4.54280 4.77708 4.80395 4.86719 4.87138 4.91483 5.08971 5.11521 5.15192 5.17340 5.18744 5.33857 5.43000 5.54023 5.55769 5.72709 5.78017 6.02205 6.23880 6.44245 6.49073 6.55442 6.57354 6.66476 6.78866 6.97828 7.48346 7.59011 8.08715 8.31496 8.77356 9.65762 10.19657 11.22954 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.020211 B = 0.002253 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.031489 B =12424.494695 C =12881.099746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.163 3.837 4 H 0.095 0.905 5 C -0.170 4.170 6 C 0.017 3.983 7 N -0.436 5.436 8 C 0.012 3.988 9 C 0.597 3.403 10 O -0.531 6.531 11 N -0.679 5.679 12 C 0.101 3.899 13 H 0.135 0.865 14 C -0.175 4.175 15 H 0.111 0.889 16 C 0.158 3.842 17 N -0.605 5.605 18 C -0.236 4.236 19 H 0.096 0.904 20 C 0.019 3.981 21 N -0.914 5.914 22 Si 0.887 3.113 23 H -0.286 1.286 24 H -0.302 1.302 25 H -0.270 1.270 26 C 0.129 3.871 27 C -0.177 4.177 28 H 0.110 0.890 29 C -0.229 4.229 30 S 0.254 5.746 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.409 0.591 38 H 0.034 0.966 39 H 0.063 0.937 40 H 0.264 0.736 41 H 0.072 0.928 42 H 0.038 0.962 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.437 -20.638 25.846 33.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.102 3.898 4 H 0.113 0.887 5 C -0.228 4.228 6 C -0.262 4.262 7 N -0.153 5.153 8 C -0.123 4.123 9 C 0.381 3.619 10 O -0.408 6.408 11 N -0.327 5.327 12 C -0.005 4.005 13 H 0.153 0.847 14 C -0.196 4.196 15 H 0.129 0.871 16 C 0.032 3.968 17 N -0.329 5.329 18 C -0.362 4.362 19 H 0.113 0.887 20 C -0.180 4.180 21 N -0.558 5.558 22 Si 0.718 3.282 23 H -0.214 1.214 24 H -0.230 1.230 25 H -0.195 1.195 26 C 0.003 3.997 27 C -0.199 4.199 28 H 0.128 0.872 29 C -0.372 4.372 30 S 0.512 5.488 31 H 0.110 0.890 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.245 0.755 38 H 0.052 0.948 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.056 0.944 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -6.848 -21.205 25.732 34.039 hybrid contribution -0.101 0.046 -1.066 1.072 sum -6.949 -21.159 24.666 33.232 Atomic orbital electron populations 1.22869 0.79601 1.03408 1.00581 1.87895 1.20802 1.26286 1.95125 1.20299 0.88278 0.86206 0.95031 0.88733 1.22308 1.03466 1.02548 0.94510 1.26722 1.02083 0.96743 1.00692 1.66827 1.12834 1.27198 1.08404 1.20344 0.91492 0.97915 1.02554 1.16977 0.84615 0.80143 0.80198 1.90834 1.19119 1.72797 1.58017 1.45159 1.20863 1.24970 1.41699 1.21873 0.97924 0.89682 0.90989 0.84701 1.24348 1.03891 0.90112 1.01264 0.87071 1.21130 0.94592 0.95937 0.85139 1.45553 1.78260 1.01569 1.07515 1.18658 1.44170 0.87278 0.86113 0.88684 1.25009 1.00024 0.97315 0.95609 1.69769 1.48340 1.34667 1.03046 0.86913 0.79816 0.83907 0.77533 1.21372 1.23010 1.19512 1.21685 0.97483 0.85950 0.94536 1.24368 1.00382 1.02952 0.92156 0.87155 1.26787 1.07293 0.99969 1.03126 1.82934 1.05219 1.26084 1.34580 0.89000 0.93459 0.93406 0.91247 0.90576 0.90878 0.75537 0.94830 0.91846 0.92635 0.90981 0.94447 0.79057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.82 101.05 1.09 1.23 16 2 O -0.38 -2.70 10.17 -35.23 -0.36 -3.06 16 3 C 0.16 1.13 3.23 -27.88 -0.09 1.04 16 4 H 0.09 0.61 7.79 -51.93 -0.40 0.21 16 5 C -0.17 -0.86 9.51 37.16 0.35 -0.51 16 6 C 0.02 0.15 6.30 -13.61 -0.09 0.07 16 7 N -0.44 -4.92 10.12 -8.51 -0.09 -5.00 16 8 C 0.01 0.16 6.70 -84.53 -0.57 -0.41 16 9 C 0.60 8.99 7.80 -12.59 -0.10 8.89 16 10 O -0.53 -9.51 16.28 5.25 0.09 -9.42 16 11 N -0.68 -9.68 5.56 -54.93 -0.31 -9.99 16 12 C 0.10 1.66 5.98 -67.93 -0.41 1.25 16 13 H 0.14 2.41 7.40 -51.93 -0.38 2.03 16 14 C -0.18 -2.95 7.06 -89.22 -0.63 -3.58 16 15 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 16 C 0.16 3.16 7.04 -2.40 -0.02 3.15 16 17 N -0.60 -14.89 3.19 -168.85 -0.54 -15.42 16 18 C -0.24 -6.75 10.78 -15.06 -0.16 -6.91 16 19 H 0.10 2.86 8.06 -52.49 -0.42 2.44 16 20 C 0.02 0.55 5.49 -17.43 -0.10 0.45 16 21 N -0.91 -28.50 13.97 55.49 0.78 -27.73 16 22 Si 0.89 23.08 24.49 -169.99 -4.16 18.92 16 23 H -0.29 -7.19 6.36 56.52 0.36 -6.83 16 24 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 25 H -0.27 -6.90 6.33 56.52 0.36 -6.55 16 26 C 0.13 2.90 4.49 -2.41 -0.01 2.89 16 27 C -0.18 -3.21 7.06 -89.22 -0.63 -3.84 16 28 H 0.11 1.86 8.14 -51.93 -0.42 1.44 16 29 C -0.23 -2.33 10.62 29.65 0.31 -2.02 16 30 S 0.25 1.96 22.74 -107.50 -2.44 -0.49 16 31 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.14 7.87 -51.93 -0.41 -0.27 16 33 H 0.05 0.20 8.08 -51.93 -0.42 -0.22 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.27 7.87 -51.93 -0.41 -0.14 16 37 H 0.41 5.11 8.35 -40.82 -0.34 4.77 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 41 H 0.07 1.73 5.06 -51.93 -0.26 1.47 16 42 H 0.04 0.86 6.79 -51.93 -0.35 0.50 16 43 H 0.19 1.74 8.03 -52.49 -0.42 1.32 16 LS Contribution 369.77 15.07 5.57 5.57 Total: -1.00 -34.29 369.77 -8.50 -42.79 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.01 Total: 2.13 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -1.03 Total: 1.70 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.16 Total: -58.14 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -0.27 Total: -12.48 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.16 Total: 18.92 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.44 Total: -0.49 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.29 -8.50 -42.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000959876367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.901 kcal (2) G-P(sol) polarization free energy of solvation -34.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds