Wall clock time and date at job start Tue Mar 31 2020 20:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00303 * 2 1 4 4 H 1.08997 * 109.46872 * 330.00130 * 3 2 1 5 5 C 1.53008 * 109.47022 * 89.99431 * 3 2 1 6 6 C 1.50692 * 109.47464 * 209.99607 * 3 2 1 7 7 N 1.28650 * 124.71804 * 135.24942 * 6 3 2 8 8 C 1.33565 * 115.76267 * 180.23014 * 7 6 3 9 9 C 1.47265 * 123.13931 * 179.83332 * 8 7 6 10 10 O 1.21636 * 119.99946 * 179.73041 * 9 8 7 11 11 N 1.34775 * 120.00098 * 359.72041 * 9 8 7 12 12 C 1.46503 * 119.99972 * 179.97438 * 11 9 8 13 13 H 1.08992 * 115.49587 * 350.38600 * 12 11 9 14 14 C 1.52999 * 117.44096 * 205.00351 * 12 11 9 15 15 H 1.08997 * 120.26853 * 3.83225 * 14 12 11 16 16 C 1.54397 * 118.12107 * 160.81426 * 14 12 11 17 17 N 1.48145 * 104.61828 * 87.18833 * 16 14 12 18 18 C 1.36937 * 127.83537 * 140.41412 * 17 16 14 19 19 H 1.07997 * 120.00108 * 340.88378 * 18 17 16 20 20 C 1.38810 * 119.99670 * 160.88164 * 18 17 16 21 21 N 1.31621 * 120.00069 * 163.44057 * 20 18 17 22 22 Si 1.86800 * 120.00355 * 343.43599 * 20 18 17 23 23 H 1.48498 * 109.46932 * 85.38518 * 22 20 18 24 24 H 1.48500 * 109.47242 * 205.38451 * 22 20 18 25 25 H 1.48497 * 109.47099 * 325.38788 * 22 20 18 26 26 C 1.48147 * 104.32396 * 320.41760 * 17 16 14 27 27 C 1.52997 * 117.43822 * 135.76474 * 12 11 9 28 28 H 1.09002 * 120.26806 * 356.17774 * 27 12 11 29 29 C 1.35203 * 113.72141 * 359.55692 * 8 7 6 30 30 S 1.70778 * 124.72081 * 315.02726 * 6 3 2 31 31 H 1.09001 * 109.47274 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47099 * 300.00153 * 1 2 3 33 33 H 1.08995 * 109.46584 * 60.00080 * 1 2 3 34 34 H 1.09004 * 109.46427 * 60.00335 * 5 3 2 35 35 H 1.08997 * 109.46817 * 180.02562 * 5 3 2 36 36 H 1.08999 * 109.47274 * 300.00839 * 5 3 2 37 37 H 0.96998 * 120.00071 * 0.02562 * 11 9 8 38 38 H 1.09007 * 110.40356 * 328.40707 * 16 14 12 39 39 H 1.08998 * 110.50885 * 206.02707 * 16 14 12 40 40 H 0.96998 * 120.00628 * 180.02562 * 21 20 18 41 41 H 1.09004 * 110.40656 * 158.36879 * 26 17 16 42 42 H 1.08994 * 110.40487 * 280.79947 * 26 17 16 43 43 H 1.07995 * 125.58985 * 180.23171 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 -0.5138 5 6 2.2176 1.7714 1.4426 6 6 3.3387 1.2639 -0.7103 7 7 3.7345 2.1300 -1.5752 8 6 4.9447 1.9167 -2.0985 9 6 5.5548 2.8031 -3.1039 10 8 6.6638 2.5570 -3.5388 11 7 4.8842 3.8869 -3.5423 12 6 5.4913 4.7690 -4.5421 13 1 6.5420 4.5780 -4.7601 14 6 5.0160 6.2228 -4.5813 15 1 4.3001 6.5868 -3.8444 16 6 5.9171 7.2645 -5.2789 17 7 5.5131 7.2142 -6.7033 18 6 5.3731 8.2616 -7.5742 19 1 5.2592 9.2668 -7.1960 20 6 5.3776 8.0314 -8.9431 21 7 4.9261 8.9533 -9.7669 22 14 6.0244 6.4133 -9.6160 23 1 4.9376 5.4015 -9.6014 24 1 6.4982 6.6108 -11.0095 25 1 7.1514 5.9414 -8.7721 26 6 5.2949 5.7737 -6.9718 27 6 4.6058 5.2398 -5.6975 28 1 3.5842 4.8716 -5.7921 29 6 5.5599 0.8143 -1.6145 30 16 4.5303 0.0634 -0.4751 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3632 0.5138 -0.8900 34 1 2.8829 1.0774 1.9564 35 1 2.6606 2.7673 1.4425 36 1 1.2568 1.8014 1.9564 37 1 4.0000 4.0833 -3.1953 38 1 6.9669 6.9914 -5.1717 39 1 5.7400 8.2586 -4.8684 40 1 4.9289 8.7923 -10.7235 41 1 4.6464 5.6425 -7.8380 42 1 6.2475 5.2679 -7.1290 43 1 6.5410 0.4653 -1.9009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000959876367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:47 Heat of formation + Delta-G solvation = 10.520298 kcal Electronic energy + Delta-G solvation = -25887.901667 eV Core-core repulsion = 22061.512425 eV Total energy + Delta-G solvation = -3826.389242 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.78252 -40.79399 -39.73666 -38.92950 -36.26820 -34.47795 -33.57789 -32.64068 -30.74350 -29.46888 -28.04639 -27.75123 -26.71842 -24.93222 -23.31664 -22.28888 -22.13527 -21.26044 -20.92289 -19.87136 -18.97708 -18.10836 -17.57193 -17.33864 -17.24404 -16.84488 -16.61863 -16.13828 -15.90408 -15.54356 -15.26831 -15.02829 -14.89675 -14.66163 -14.31479 -14.01274 -13.83125 -13.64990 -13.42573 -13.27444 -13.18669 -12.97781 -12.70921 -12.62637 -12.46359 -12.15304 -12.05325 -11.81949 -11.56446 -11.45688 -11.02175 -10.97438 -10.88925 -10.83223 -10.66394 -10.12791 -9.80024 -9.18020 -8.19800 -5.50416 -0.61551 0.15958 0.54955 0.69715 1.26053 1.36636 1.44407 1.84339 2.05430 2.31448 2.37160 2.71596 3.01607 3.17970 3.23519 3.55858 3.66481 3.70153 3.93032 3.97457 4.04141 4.07378 4.21193 4.21889 4.28746 4.51397 4.56370 4.59107 4.63969 4.70471 4.73634 4.75116 4.86384 4.92169 4.93006 5.10121 5.18114 5.21578 5.36274 5.55716 6.01358 6.07708 6.15116 6.45940 6.63508 6.96995 7.45061 8.09275 9.00048 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.020211 B = 0.002253 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.031489 B =12424.494695 C =12881.099746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.162 3.838 4 H 0.097 0.903 5 C -0.166 4.166 6 C 0.004 3.996 7 N -0.452 5.452 8 C -0.012 4.012 9 C 0.597 3.403 10 O -0.567 6.567 11 N -0.670 5.670 12 C 0.122 3.878 13 H 0.122 0.878 14 C -0.156 4.156 15 H 0.140 0.860 16 C 0.151 3.849 17 N -0.626 5.626 18 C -0.224 4.224 19 H 0.068 0.932 20 C -0.039 4.039 21 N -0.959 5.959 22 Si 0.946 3.054 23 H -0.273 1.273 24 H -0.307 1.307 25 H -0.265 1.265 26 C 0.124 3.876 27 C -0.182 4.182 28 H 0.128 0.872 29 C -0.236 4.236 30 S 0.325 5.675 31 H 0.102 0.898 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.420 0.580 38 H 0.040 0.960 39 H 0.069 0.931 40 H 0.263 0.737 41 H 0.055 0.945 42 H 0.035 0.965 43 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.352 -23.180 28.645 37.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C 0.101 3.899 4 H 0.114 0.886 5 C -0.225 4.225 6 C -0.275 4.275 7 N -0.169 5.169 8 C -0.148 4.148 9 C 0.382 3.618 10 O -0.446 6.446 11 N -0.318 5.318 12 C 0.015 3.985 13 H 0.139 0.861 14 C -0.177 4.177 15 H 0.158 0.842 16 C 0.026 3.974 17 N -0.351 5.351 18 C -0.353 4.353 19 H 0.086 0.914 20 C -0.233 4.233 21 N -0.607 5.607 22 Si 0.775 3.225 23 H -0.200 1.200 24 H -0.235 1.235 25 H -0.190 1.190 26 C -0.001 4.001 27 C -0.203 4.203 28 H 0.146 0.854 29 C -0.380 4.380 30 S 0.584 5.416 31 H 0.120 0.880 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.257 0.743 38 H 0.058 0.942 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -7.793 -23.785 28.601 38.006 hybrid contribution 0.158 0.774 -1.763 1.932 sum -7.634 -23.011 26.837 36.167 Atomic orbital electron populations 1.23048 0.78265 1.04383 1.01321 1.87858 1.22273 1.26308 1.95260 1.20411 0.87315 0.86396 0.95794 0.88557 1.22299 1.04483 1.02328 0.93372 1.27211 1.03339 0.96816 1.00149 1.66790 1.12475 1.28311 1.09311 1.20033 0.92677 0.98627 1.03468 1.17347 0.84160 0.80108 0.80177 1.90809 1.20666 1.73668 1.59425 1.45012 1.21232 1.24544 1.41019 1.21519 0.96980 0.89646 0.90399 0.86061 1.24241 1.03253 0.89363 1.00849 0.84225 1.21312 0.95572 0.97500 0.82973 1.45661 1.78935 1.01671 1.08811 1.18610 1.42231 0.87571 0.86853 0.91381 1.25626 1.01047 1.00587 0.96051 1.69888 1.50607 1.36941 1.03226 0.85959 0.79536 0.80589 0.76391 1.19975 1.23513 1.19001 1.21656 0.97373 0.84911 0.96154 1.24187 1.01121 1.04439 0.90580 0.85438 1.27048 1.07986 0.99574 1.03349 1.82719 1.02926 1.23896 1.32094 0.87974 0.91923 0.93487 0.91008 0.90792 0.89252 0.74250 0.94205 0.91293 0.92785 0.92726 0.94773 0.78484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.82 113.37 1.23 1.39 16 2 O -0.40 -4.62 10.17 -148.98 -1.51 -6.13 16 3 C 0.16 1.85 3.23 29.85 0.10 1.95 16 4 H 0.10 1.05 7.79 -2.39 -0.02 1.03 16 5 C -0.17 -1.24 9.51 71.98 0.68 -0.55 16 6 C 0.00 0.06 6.30 88.57 0.56 0.62 16 7 N -0.45 -9.36 10.12 -180.84 -1.83 -11.19 16 8 C -0.01 -0.29 6.70 40.55 0.27 -0.02 16 9 C 0.60 17.27 7.80 86.62 0.68 17.95 16 10 O -0.57 -19.97 16.28 -4.15 -0.07 -20.03 16 11 N -0.67 -17.84 5.56 -445.95 -2.48 -20.32 16 12 C 0.12 3.75 5.98 44.99 0.27 4.02 16 13 H 0.12 4.20 7.40 -2.39 -0.02 4.18 16 14 C -0.16 -4.90 7.06 -9.88 -0.07 -4.97 16 15 H 0.14 3.64 8.14 -2.39 -0.02 3.62 16 16 C 0.15 5.87 7.04 86.54 0.61 6.48 16 17 N -0.63 -30.65 3.19 -688.13 -2.20 -32.85 16 18 C -0.22 -13.11 10.78 84.03 0.91 -12.20 16 19 H 0.07 4.25 8.06 -2.91 -0.02 4.22 16 20 C -0.04 -2.35 5.49 84.86 0.47 -1.88 16 21 N -0.96 -61.49 13.97 21.65 0.30 -61.19 16 22 Si 0.95 48.47 24.49 68.60 1.68 50.15 16 23 H -0.27 -13.27 6.36 99.48 0.63 -12.64 16 24 H -0.31 -15.79 7.11 99.48 0.71 -15.08 16 25 H -0.27 -13.19 6.33 99.48 0.63 -12.56 16 26 C 0.12 5.47 4.49 86.54 0.39 5.86 16 27 C -0.18 -6.26 7.06 -9.89 -0.07 -6.33 16 28 H 0.13 3.97 8.14 -2.39 -0.02 3.96 16 29 C -0.24 -4.39 10.62 67.12 0.71 -3.68 16 30 S 0.33 4.14 22.74 -56.49 -1.28 2.86 16 31 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.06 0.19 7.87 -2.39 -0.02 0.18 16 33 H 0.05 0.30 8.08 -2.39 -0.02 0.28 16 34 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 35 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.09 0.38 7.87 -2.39 -0.02 0.36 16 37 H 0.42 9.49 8.35 -92.71 -0.77 8.72 16 38 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 41 H 0.05 2.58 5.06 -2.38 -0.01 2.57 16 42 H 0.03 1.53 6.79 -2.39 -0.02 1.52 16 43 H 0.20 3.30 8.03 -2.91 -0.02 3.28 16 Total: -1.00 -75.15 369.77 -0.55 -75.69 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.12 Total: 14.39 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 6.72 Total: 8.63 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -6.20 Total: -125.55 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -1.58 Total: -26.17 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 1.68 Total: 50.15 kcal Atomic # 16 Polarization: 4.14 SS G_CDS: -1.28 Total: 2.86 kcal Total: -75.15 -0.55 -75.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000959876367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.214 kcal (2) G-P(sol) polarization free energy of solvation -75.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds