Wall clock time and date at job start Tue Mar 31 2020 20:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 114.00283 * 2 1 4 4 H 1.08999 * 109.47057 * 30.00272 * 3 2 1 5 5 C 1.53001 * 109.46882 * 269.99844 * 3 2 1 6 6 C 1.50701 * 109.47110 * 150.00258 * 3 2 1 7 7 N 1.29425 * 124.80845 * 45.02051 * 6 3 2 8 8 C 1.30944 * 117.36771 * 179.97438 * 7 6 3 9 9 C 1.35660 * 114.18734 * 359.97438 * 8 7 6 10 10 C 1.46678 * 126.12826 * 180.02562 * 9 8 7 11 11 O 1.21686 * 120.00406 * 179.97438 * 10 9 8 12 12 N 1.34780 * 120.00273 * 359.97438 * 10 9 8 13 13 C 1.46497 * 120.00374 * 180.02562 * 12 10 9 14 14 H 1.09001 * 115.51207 * 350.40800 * 13 12 10 15 15 C 1.53004 * 117.44263 * 204.99920 * 13 12 10 16 16 H 1.09006 * 119.53816 * 5.71492 * 15 13 12 17 17 C 1.54387 * 118.12064 * 160.80240 * 15 13 12 18 18 N 1.48151 * 104.61569 * 87.19425 * 17 15 13 19 19 C 1.36937 * 127.83823 * 140.40852 * 18 17 15 20 20 H 1.07996 * 119.99839 * 340.87079 * 19 18 17 21 21 C 1.38812 * 119.99784 * 160.86990 * 19 18 17 22 22 N 1.31614 * 119.99994 * 163.43865 * 21 19 18 23 23 Si 1.86801 * 120.00145 * 343.43505 * 21 19 18 24 24 H 1.48502 * 109.46876 * 85.38508 * 23 21 19 25 25 H 1.48493 * 109.47401 * 205.38760 * 23 21 19 26 26 H 1.48504 * 109.47140 * 325.39109 * 23 21 19 27 27 C 1.48147 * 104.32368 * 320.41330 * 18 17 15 28 28 C 1.52995 * 117.44732 * 135.76238 * 13 12 10 29 29 H 1.09000 * 119.53464 * 355.87442 * 28 13 12 30 30 S 1.70950 * 124.80084 * 224.72447 * 6 3 2 31 31 H 1.09002 * 109.47430 * 299.99981 * 1 2 3 32 32 H 1.09007 * 109.47225 * 59.99621 * 1 2 3 33 33 H 1.08997 * 109.47511 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47233 * 299.99850 * 5 3 2 35 35 H 1.09003 * 109.47021 * 60.00793 * 5 3 2 36 36 H 1.09008 * 109.46408 * 179.97438 * 5 3 2 37 37 H 1.07994 * 122.90374 * 180.02562 * 8 7 6 38 38 H 0.97000 * 119.99516 * 359.97438 * 12 10 9 39 39 H 1.09003 * 110.40550 * 205.97613 * 17 15 13 40 40 H 1.08997 * 110.41327 * 328.28845 * 17 15 13 41 41 H 0.97002 * 119.99941 * 179.97438 * 22 21 19 42 42 H 1.08994 * 110.41055 * 158.37156 * 27 18 17 43 43 H 1.08999 * 110.40314 * 280.68887 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2177 1.7713 -1.4425 6 6 3.3387 1.2638 0.7104 7 7 4.2433 0.3554 0.5328 8 6 5.3476 0.4615 1.2283 9 6 5.3829 1.5368 2.0546 10 6 6.4871 1.9061 2.9468 11 8 6.4003 2.9000 3.6433 12 7 7.5980 1.1444 2.9951 13 6 8.7006 1.5129 3.8865 14 1 8.6191 2.4946 4.3531 15 6 10.1017 1.0229 3.5149 16 1 10.2564 0.5052 2.5682 17 6 11.3146 1.7415 4.1442 18 7 11.5364 1.0427 5.4316 19 6 12.7314 0.7070 6.0102 20 1 13.6285 0.6646 5.4105 21 6 12.7894 0.4215 7.3673 22 7 13.8340 -0.2068 7.8636 23 14 11.3848 0.9289 8.4895 24 1 10.3311 -0.1173 8.4677 25 1 11.8924 1.0915 9.8754 26 1 10.8141 2.2160 8.0172 27 6 10.1723 0.7892 5.9509 28 6 9.3485 0.3951 4.7060 29 1 8.9374 -0.6132 4.6589 30 16 3.8670 2.4139 1.8595 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 2.8829 1.0774 -1.9563 35 1 1.2568 1.8015 -1.9563 36 1 2.6607 2.7673 -1.4424 37 1 6.1603 -0.2454 1.1503 38 1 7.6671 0.3519 2.4401 39 1 12.1899 1.6427 3.5023 40 1 11.0865 2.7935 4.3152 41 1 13.8747 -0.4060 8.8120 42 1 10.1859 -0.0280 6.6721 43 1 9.7659 1.6916 6.4077 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000959915770.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:50 Heat of formation + Delta-G solvation = 40.300195 kcal Electronic energy + Delta-G solvation = -25588.376647 eV Core-core repulsion = 21763.278759 eV Total energy + Delta-G solvation = -3825.097888 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.62694 -39.82969 -38.72755 -38.29103 -34.79426 -33.23209 -32.62568 -31.06899 -29.85680 -27.85438 -27.38742 -26.49089 -25.65888 -23.51727 -22.54753 -21.40344 -20.78181 -19.98888 -19.60163 -18.74840 -17.76041 -17.01869 -16.71909 -16.46326 -15.98921 -15.83076 -15.34549 -15.16469 -14.85179 -14.45293 -14.20802 -13.73825 -13.69310 -13.60312 -13.23521 -13.00526 -12.86146 -12.54135 -12.30711 -12.26293 -11.98342 -11.79028 -11.58410 -11.26147 -11.09029 -10.82272 -10.71341 -10.34344 -10.23076 -10.09488 -9.90209 -9.82933 -9.62519 -9.41112 -9.37435 -8.84412 -8.67454 -7.15847 -5.95827 -3.30553 -0.20818 0.64441 1.20227 2.06116 2.86177 2.88921 3.24666 3.31642 3.47426 3.48649 3.51501 4.01438 4.15887 4.39360 4.47159 4.51208 4.56949 4.75328 4.77381 4.79368 4.84655 5.03941 5.04972 5.06124 5.17177 5.19898 5.29331 5.47665 5.52566 5.64608 5.65203 5.70114 5.90274 6.18670 6.43381 6.47184 6.51003 6.51769 6.60714 6.72891 7.20221 7.24419 7.55472 7.91876 8.28749 8.74408 9.62814 10.15990 11.20200 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.030631 B = 0.002013 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.890048 B =13906.055761 C =14040.045474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.364 6.364 3 C 0.166 3.834 4 H 0.083 0.917 5 C -0.168 4.168 6 C 0.031 3.969 7 N -0.450 5.450 8 C 0.092 3.908 9 C -0.288 4.288 10 C 0.597 3.403 11 O -0.530 6.530 12 N -0.684 5.684 13 C 0.098 3.902 14 H 0.136 0.864 15 C -0.174 4.174 16 H 0.112 0.888 17 C 0.158 3.842 18 N -0.604 5.604 19 C -0.237 4.237 20 H 0.096 0.904 21 C 0.019 3.981 22 N -0.913 5.913 23 Si 0.887 3.113 24 H -0.286 1.286 25 H -0.302 1.302 26 H -0.270 1.270 27 C 0.129 3.871 28 C -0.173 4.173 29 H 0.111 0.889 30 S 0.244 5.756 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.183 0.817 38 H 0.401 0.599 39 H 0.063 0.937 40 H 0.034 0.966 41 H 0.264 0.736 42 H 0.073 0.927 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.800 3.401 -19.175 33.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.282 6.282 3 C 0.104 3.896 4 H 0.101 0.899 5 C -0.227 4.227 6 C -0.244 4.244 7 N -0.164 5.164 8 C -0.067 4.067 9 C -0.413 4.413 10 C 0.382 3.618 11 O -0.407 6.407 12 N -0.332 5.332 13 C -0.007 4.007 14 H 0.154 0.846 15 C -0.195 4.195 16 H 0.130 0.870 17 C 0.031 3.969 18 N -0.328 5.328 19 C -0.363 4.363 20 H 0.113 0.887 21 C -0.179 4.179 22 N -0.557 5.557 23 Si 0.718 3.282 24 H -0.214 1.214 25 H -0.230 1.230 26 H -0.195 1.195 27 C 0.003 3.997 28 C -0.195 4.195 29 H 0.129 0.871 30 S 0.503 5.497 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.200 0.800 38 H 0.236 0.764 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -28.103 4.391 -18.392 33.872 hybrid contribution -0.136 -0.894 0.332 0.963 sum -28.239 3.497 -18.060 33.702 Atomic orbital electron populations 1.22908 0.80457 1.03460 1.00199 1.88097 1.19760 1.25463 1.94925 1.20488 0.87272 0.86491 0.95358 0.89886 1.22273 1.03476 1.02266 0.94720 1.27371 1.00404 0.96155 1.00462 1.66037 1.00725 1.25491 1.24134 1.22262 0.96153 0.96260 0.92041 1.25840 1.02320 1.03740 1.09374 1.16610 0.80876 0.83132 0.81169 1.90869 1.80485 1.26206 1.43185 1.45071 1.15897 1.28698 1.43551 1.21893 0.84236 0.99277 0.95335 0.84627 1.24343 0.91496 1.04542 0.99096 0.86987 1.21135 0.93715 0.93806 0.88222 1.45536 1.00890 1.65512 1.20863 1.18655 0.84906 1.41015 0.91774 0.88664 1.25011 0.96828 0.99578 0.96489 1.69768 1.30327 1.41982 1.13600 0.86921 0.81748 0.79492 0.80030 1.21357 1.22964 1.19542 1.21680 0.85395 0.99097 0.93481 1.24388 1.01728 0.97930 0.95418 0.87096 1.84049 1.07215 1.25002 1.33478 0.93710 0.93618 0.89017 0.90510 0.91053 0.91052 0.79984 0.76384 0.91806 0.94800 0.92605 0.90927 0.94401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 10.82 101.05 1.09 1.22 16 2 O -0.36 -3.09 10.32 -35.23 -0.36 -3.46 16 3 C 0.17 1.15 3.23 -27.88 -0.09 1.06 16 4 H 0.08 0.37 7.78 -51.93 -0.40 -0.03 16 5 C -0.17 -0.93 9.51 37.16 0.35 -0.57 16 6 C 0.03 0.29 6.28 -13.29 -0.08 0.20 16 7 N -0.45 -4.86 10.49 -11.50 -0.12 -4.98 16 8 C 0.09 0.90 10.93 -18.85 -0.21 0.69 16 9 C -0.29 -3.18 6.48 -37.10 -0.24 -3.42 16 10 C 0.60 8.06 7.79 -12.85 -0.10 7.96 16 11 O -0.53 -9.07 16.53 5.20 0.09 -8.98 16 12 N -0.68 -8.30 5.55 -55.12 -0.31 -8.60 16 13 C 0.10 1.48 5.98 -67.93 -0.41 1.07 16 14 H 0.14 2.29 7.40 -51.93 -0.38 1.91 16 15 C -0.17 -2.72 7.06 -89.22 -0.63 -3.35 16 16 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 17 C 0.16 3.03 7.04 -2.41 -0.02 3.01 16 18 N -0.60 -14.47 3.19 -168.86 -0.54 -15.01 16 19 C -0.24 -6.67 10.78 -15.06 -0.16 -6.84 16 20 H 0.10 2.83 8.06 -52.49 -0.42 2.40 16 21 C 0.02 0.56 5.49 -17.43 -0.10 0.47 16 22 N -0.91 -28.14 13.97 55.49 0.78 -27.36 16 23 Si 0.89 22.72 24.49 -169.99 -4.16 18.55 16 24 H -0.29 -7.06 6.36 56.52 0.36 -6.70 16 25 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 26 H -0.27 -6.80 6.33 56.52 0.36 -6.44 16 27 C 0.13 2.81 4.49 -2.41 -0.01 2.80 16 28 C -0.17 -2.94 7.06 -89.23 -0.63 -3.57 16 29 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 30 S 0.24 2.26 23.01 -107.50 -2.47 -0.21 16 31 H 0.04 0.16 8.09 -51.93 -0.42 -0.26 16 32 H 0.05 0.14 7.87 -51.92 -0.41 -0.27 16 33 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.27 7.87 -51.93 -0.41 -0.14 16 36 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 37 H 0.18 1.27 7.15 -52.49 -0.38 0.89 16 38 H 0.40 3.63 7.54 -40.82 -0.31 3.32 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 42 H 0.07 1.70 5.06 -51.93 -0.26 1.43 16 43 H 0.04 0.84 6.79 -51.93 -0.35 0.49 16 LS Contribution 369.16 15.07 5.56 5.56 Total: -1.00 -35.16 369.16 -8.69 -43.85 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -5.93 Total: -0.10 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.22 Total: 0.73 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.19 Total: -55.95 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.28 Total: -12.44 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.16 Total: 18.55 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.47 Total: -0.21 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.16 -8.69 -43.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000959915770.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.155 kcal (2) G-P(sol) polarization free energy of solvation -35.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds