Wall clock time and date at job start Tue Mar 31 2020 20:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 114.00283 * 2 1 4 4 H 1.08999 * 109.47057 * 30.00272 * 3 2 1 5 5 C 1.53001 * 109.46882 * 269.99844 * 3 2 1 6 6 C 1.50701 * 109.47110 * 150.00258 * 3 2 1 7 7 N 1.29425 * 124.80845 * 45.02051 * 6 3 2 8 8 C 1.30944 * 117.36771 * 179.97438 * 7 6 3 9 9 C 1.35660 * 114.18734 * 359.97438 * 8 7 6 10 10 C 1.46678 * 126.12826 * 180.02562 * 9 8 7 11 11 O 1.21686 * 120.00406 * 179.97438 * 10 9 8 12 12 N 1.34780 * 120.00273 * 359.97438 * 10 9 8 13 13 C 1.46497 * 120.00374 * 180.02562 * 12 10 9 14 14 H 1.09001 * 115.51207 * 350.40800 * 13 12 10 15 15 C 1.53004 * 117.44263 * 204.99920 * 13 12 10 16 16 H 1.09006 * 119.53816 * 5.71492 * 15 13 12 17 17 C 1.54387 * 118.12064 * 160.80240 * 15 13 12 18 18 N 1.48151 * 104.61569 * 87.19425 * 17 15 13 19 19 C 1.36937 * 127.83823 * 140.40852 * 18 17 15 20 20 H 1.07996 * 119.99839 * 340.87079 * 19 18 17 21 21 C 1.38812 * 119.99784 * 160.86990 * 19 18 17 22 22 N 1.31614 * 119.99994 * 163.43865 * 21 19 18 23 23 Si 1.86801 * 120.00145 * 343.43505 * 21 19 18 24 24 H 1.48502 * 109.46876 * 85.38508 * 23 21 19 25 25 H 1.48493 * 109.47401 * 205.38760 * 23 21 19 26 26 H 1.48504 * 109.47140 * 325.39109 * 23 21 19 27 27 C 1.48147 * 104.32368 * 320.41330 * 18 17 15 28 28 C 1.52995 * 117.44732 * 135.76238 * 13 12 10 29 29 H 1.09000 * 119.53464 * 355.87442 * 28 13 12 30 30 S 1.70950 * 124.80084 * 224.72447 * 6 3 2 31 31 H 1.09002 * 109.47430 * 299.99981 * 1 2 3 32 32 H 1.09007 * 109.47225 * 59.99621 * 1 2 3 33 33 H 1.08997 * 109.47511 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47233 * 299.99850 * 5 3 2 35 35 H 1.09003 * 109.47021 * 60.00793 * 5 3 2 36 36 H 1.09008 * 109.46408 * 179.97438 * 5 3 2 37 37 H 1.07994 * 122.90374 * 180.02562 * 8 7 6 38 38 H 0.97000 * 119.99516 * 359.97438 * 12 10 9 39 39 H 1.09003 * 110.40550 * 205.97613 * 17 15 13 40 40 H 1.08997 * 110.41327 * 328.28845 * 17 15 13 41 41 H 0.97002 * 119.99941 * 179.97438 * 22 21 19 42 42 H 1.08994 * 110.41055 * 158.37156 * 27 18 17 43 43 H 1.08999 * 110.40314 * 280.68887 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2177 1.7713 -1.4425 6 6 3.3387 1.2638 0.7104 7 7 4.2433 0.3554 0.5328 8 6 5.3476 0.4615 1.2283 9 6 5.3829 1.5368 2.0546 10 6 6.4871 1.9061 2.9468 11 8 6.4003 2.9000 3.6433 12 7 7.5980 1.1444 2.9951 13 6 8.7006 1.5129 3.8865 14 1 8.6191 2.4946 4.3531 15 6 10.1017 1.0229 3.5149 16 1 10.2564 0.5052 2.5682 17 6 11.3146 1.7415 4.1442 18 7 11.5364 1.0427 5.4316 19 6 12.7314 0.7070 6.0102 20 1 13.6285 0.6646 5.4105 21 6 12.7894 0.4215 7.3673 22 7 13.8340 -0.2068 7.8636 23 14 11.3848 0.9289 8.4895 24 1 10.3311 -0.1173 8.4677 25 1 11.8924 1.0915 9.8754 26 1 10.8141 2.2160 8.0172 27 6 10.1723 0.7892 5.9509 28 6 9.3485 0.3951 4.7060 29 1 8.9374 -0.6132 4.6589 30 16 3.8670 2.4139 1.8595 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 2.8829 1.0774 -1.9563 35 1 1.2568 1.8015 -1.9563 36 1 2.6607 2.7673 -1.4424 37 1 6.1603 -0.2454 1.1503 38 1 7.6671 0.3519 2.4401 39 1 12.1899 1.6427 3.5023 40 1 11.0865 2.7935 4.3152 41 1 13.8747 -0.4060 8.8120 42 1 10.1859 -0.0280 6.6721 43 1 9.7659 1.6916 6.4077 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000959915770.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:49 Heat of formation + Delta-G solvation = 13.755816 kcal Electronic energy + Delta-G solvation = -25589.527698 eV Core-core repulsion = 21763.278759 eV Total energy + Delta-G solvation = -3826.248939 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.55435 -40.85749 -39.88943 -38.95541 -36.26759 -34.60148 -33.59654 -32.69302 -30.74036 -29.45034 -27.90832 -27.55287 -26.94830 -24.29994 -23.70037 -22.70255 -22.17473 -21.23179 -20.67105 -19.50264 -18.96017 -18.57367 -17.82397 -17.21831 -17.07876 -16.60432 -16.43601 -16.14450 -15.87405 -15.53212 -15.26843 -15.25210 -15.06119 -14.70108 -14.29457 -14.16259 -13.82116 -13.60978 -13.42665 -13.27183 -13.17122 -12.77482 -12.66382 -12.61001 -12.45576 -12.14744 -12.00502 -11.80980 -11.70134 -11.53365 -11.02249 -10.91492 -10.82180 -10.69204 -10.54298 -10.14206 -9.84205 -9.16610 -8.18938 -5.49374 -0.96427 -0.07448 0.48522 1.24547 1.26454 1.37446 1.44875 1.83535 1.93985 2.37655 2.72456 2.75839 2.94791 3.03478 3.24549 3.51824 3.66401 3.68222 3.72878 3.95436 3.99882 4.03315 4.06166 4.24017 4.32001 4.48179 4.57105 4.63752 4.67008 4.70604 4.74204 4.78791 4.88255 4.91492 4.95002 5.11914 5.20458 5.22707 5.36468 5.57279 6.08623 6.09400 6.26385 6.52035 6.65006 6.94198 7.46262 8.10263 9.00884 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.030631 B = 0.002013 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.890048 B =13906.055761 C =14040.045474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.394 6.394 3 C 0.158 3.842 4 H 0.109 0.891 5 C -0.165 4.165 6 C 0.040 3.960 7 N -0.478 5.478 8 C 0.108 3.892 9 C -0.317 4.317 10 C 0.601 3.399 11 O -0.572 6.572 12 N -0.669 5.669 13 C 0.120 3.880 14 H 0.119 0.881 15 C -0.154 4.154 16 H 0.146 0.854 17 C 0.149 3.851 18 N -0.626 5.626 19 C -0.224 4.224 20 H 0.068 0.932 21 C -0.039 4.039 22 N -0.959 5.959 23 Si 0.946 3.054 24 H -0.272 1.272 25 H -0.308 1.308 26 H -0.266 1.266 27 C 0.123 3.877 28 C -0.178 4.178 29 H 0.133 0.867 30 S 0.258 5.742 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.208 0.792 38 H 0.420 0.580 39 H 0.068 0.932 40 H 0.038 0.962 41 H 0.263 0.737 42 H 0.054 0.946 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.907 3.458 -21.251 37.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.313 6.313 3 C 0.097 3.903 4 H 0.127 0.873 5 C -0.223 4.223 6 C -0.234 4.234 7 N -0.193 5.193 8 C -0.052 4.052 9 C -0.441 4.441 10 C 0.388 3.612 11 O -0.453 6.453 12 N -0.319 5.319 13 C 0.013 3.987 14 H 0.136 0.864 15 C -0.175 4.175 16 H 0.164 0.836 17 C 0.024 3.976 18 N -0.351 5.351 19 C -0.352 4.352 20 H 0.086 0.914 21 C -0.233 4.233 22 N -0.607 5.607 23 Si 0.775 3.225 24 H -0.199 1.199 25 H -0.236 1.236 26 H -0.191 1.191 27 C -0.002 4.002 28 C -0.200 4.200 29 H 0.151 0.849 30 S 0.518 5.482 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.225 0.775 38 H 0.258 0.742 39 H 0.086 0.914 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -31.267 4.444 -20.529 37.667 hybrid contribution 0.750 -0.881 0.826 1.422 sum -30.516 3.563 -19.703 36.499 Atomic orbital electron populations 1.23097 0.78740 1.04204 1.01550 1.88048 1.21746 1.26364 1.95138 1.20793 0.86623 0.86731 0.96201 0.87316 1.22261 1.04228 1.02136 0.93725 1.27916 1.00863 0.95248 0.99397 1.66141 1.01459 1.26496 1.25175 1.22652 0.96312 0.95746 0.90465 1.25599 1.02622 1.05320 1.10595 1.16850 0.81254 0.82364 0.80696 1.90852 1.81320 1.28074 1.45045 1.44835 1.14792 1.29233 1.43021 1.21479 0.84750 0.97697 0.94753 0.86372 1.24233 0.90166 1.03582 0.99516 0.83620 1.21328 0.95692 0.94069 0.86510 1.45647 1.00544 1.66530 1.22352 1.18605 0.85917 1.39078 0.91642 0.91444 1.25629 0.99306 1.00432 0.97976 1.69891 1.32712 1.44305 1.13742 0.85962 0.79355 0.79520 0.77627 1.19864 1.23640 1.19076 1.21649 0.85053 0.98192 0.95317 1.24199 1.02692 0.99608 0.93474 0.84923 1.83990 1.06420 1.24696 1.33139 0.92661 0.91929 0.88699 0.92361 0.89131 0.90071 0.77505 0.74195 0.91376 0.94370 0.92830 0.92787 0.94929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 10.82 113.37 1.23 1.37 16 2 O -0.39 -5.90 10.32 -148.98 -1.54 -7.44 16 3 C 0.16 1.82 3.23 29.85 0.10 1.91 16 4 H 0.11 0.65 7.78 -2.39 -0.02 0.63 16 5 C -0.16 -1.42 9.51 71.98 0.68 -0.74 16 6 C 0.04 0.66 6.28 88.46 0.56 1.21 16 7 N -0.48 -9.30 10.49 -190.31 -2.00 -11.29 16 8 C 0.11 1.83 10.93 84.23 0.92 2.75 16 9 C -0.32 -6.33 6.48 23.88 0.15 -6.18 16 10 C 0.60 15.05 7.79 86.45 0.67 15.73 16 11 O -0.57 -19.00 16.53 -4.30 -0.07 -19.07 16 12 N -0.67 -14.22 5.55 -446.51 -2.48 -16.70 16 13 C 0.12 3.30 5.98 44.99 0.27 3.57 16 14 H 0.12 3.81 7.40 -2.39 -0.02 3.79 16 15 C -0.15 -4.37 7.06 -9.89 -0.07 -4.44 16 16 H 0.15 3.22 8.14 -2.38 -0.02 3.20 16 17 C 0.15 5.52 7.04 86.53 0.61 6.13 16 18 N -0.63 -29.77 3.19 -688.14 -2.20 -31.97 16 19 C -0.22 -12.88 10.78 84.03 0.91 -11.97 16 20 H 0.07 4.15 8.06 -2.91 -0.02 4.13 16 21 C -0.04 -2.34 5.49 84.86 0.47 -1.87 16 22 N -0.96 -60.91 13.97 21.65 0.30 -60.61 16 23 Si 0.95 47.79 24.49 68.60 1.68 49.47 16 24 H -0.27 -12.97 6.36 99.48 0.63 -12.34 16 25 H -0.31 -15.70 7.11 99.48 0.71 -15.00 16 26 H -0.27 -13.04 6.33 99.48 0.63 -12.41 16 27 C 0.12 5.21 4.49 86.54 0.39 5.60 16 28 C -0.18 -5.61 7.06 -9.89 -0.07 -5.68 16 29 H 0.13 3.63 8.14 -2.39 -0.02 3.61 16 30 S 0.26 4.32 23.01 -56.49 -1.30 3.02 16 31 H 0.05 0.26 8.09 -2.39 -0.02 0.24 16 32 H 0.06 0.22 7.87 -2.38 -0.02 0.20 16 33 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.09 0.43 7.87 -2.39 -0.02 0.41 16 36 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 37 H 0.21 2.14 7.15 -2.91 -0.02 2.12 16 38 H 0.42 5.89 7.54 -92.71 -0.70 5.19 16 39 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 42 H 0.05 2.48 5.06 -2.39 -0.01 2.46 16 43 H 0.03 1.42 6.79 -2.39 -0.02 1.40 16 Total: -1.00 -78.28 369.16 -0.59 -78.87 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 0.20 Total: 8.33 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 6.81 Total: 7.39 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -6.37 Total: -120.57 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -1.61 Total: -26.50 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 1.68 Total: 49.47 kcal Atomic # 16 Polarization: 4.32 SS G_CDS: -1.30 Total: 3.02 kcal Total: -78.28 -0.59 -78.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000959915770.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.621 kcal (2) G-P(sol) polarization free energy of solvation -78.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds