Wall clock time and date at job start Tue Mar 31 2020 20:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.44910 * 2 1 4 4 C 1.53048 * 109.45881 * 240.03571 * 2 1 3 5 5 C 1.53186 * 109.30963 * 178.61652 * 4 2 1 6 6 N 1.47199 * 108.86176 * 54.64876 * 5 4 2 7 7 C 1.36935 * 120.81591 * 126.33430 * 6 5 4 8 8 H 1.08004 * 119.99817 * 207.53981 * 7 6 5 9 9 C 1.38804 * 120.00238 * 27.54180 * 7 6 5 10 10 N 1.31624 * 120.00025 * 17.25587 * 9 7 6 11 11 Si 1.86801 * 120.00311 * 197.25673 * 9 7 6 12 12 H 1.48505 * 109.47002 * 90.00337 * 11 9 7 13 13 H 1.48506 * 109.47209 * 209.99842 * 11 9 7 14 14 H 1.48497 * 109.47373 * 330.00036 * 11 9 7 15 15 C 1.46936 * 118.55490 * 306.47926 * 6 5 4 16 16 C 1.53035 * 109.46019 * 119.96697 * 2 1 3 17 17 H 1.08994 * 109.50151 * 61.43642 * 16 2 1 18 18 N 1.46503 * 109.52470 * 301.35207 * 16 2 1 19 19 C 1.34775 * 119.99906 * 155.14736 * 18 16 2 20 20 O 1.21622 * 120.00250 * 0.02562 * 19 18 16 21 21 C 1.47171 * 119.99883 * 180.02562 * 19 18 16 22 22 C 1.36613 * 125.16368 * 179.71797 * 21 19 18 23 23 C 1.36795 * 114.74570 * 179.78207 * 22 21 19 24 24 C 1.36618 * 114.74680 * 0.51083 * 23 22 21 25 25 C 1.47163 * 125.16441 * 179.70401 * 24 23 22 26 26 N 1.34770 * 120.00143 * 179.97438 * 25 24 23 27 27 O 1.21628 * 119.99815 * 359.97438 * 25 24 23 28 28 S 1.75835 * 125.16119 * 0.02562 * 21 19 18 29 29 H 1.08998 * 109.46749 * 300.03623 * 1 2 3 30 30 H 1.08997 * 109.47075 * 60.03761 * 1 2 3 31 31 H 1.09002 * 109.47171 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.49500 * 298.56104 * 4 2 1 33 33 H 1.08995 * 109.49552 * 58.66212 * 4 2 1 34 34 H 1.09001 * 109.58471 * 174.42245 * 5 4 2 35 35 H 1.09002 * 109.58463 * 294.69775 * 5 4 2 36 36 H 0.96996 * 120.00327 * 179.97438 * 10 9 7 37 37 H 1.08995 * 109.58629 * 293.67936 * 15 6 5 38 38 H 1.08992 * 109.58520 * 173.39613 * 15 6 5 39 39 H 0.97002 * 119.99628 * 335.14387 * 18 16 2 40 40 H 1.07998 * 122.62378 * 0.02562 * 22 21 19 41 41 H 1.07997 * 122.62880 * 180.20709 * 23 22 21 42 42 H 0.97003 * 120.00430 * 359.97438 * 26 25 24 43 43 H 0.97005 * 120.00279 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7207 -1.2502 5 6 3.5713 -0.6886 -1.2643 6 7 4.0708 -1.2499 0.0015 7 6 4.9787 -2.2750 0.0045 8 1 5.0127 -2.9639 0.8356 9 6 5.8555 -2.4287 -1.0606 10 7 6.0591 -1.4310 -1.8946 11 14 6.7464 -4.0514 -1.3104 12 1 5.9288 -4.9365 -2.1783 13 1 8.0598 -3.8007 -1.9565 14 1 6.9589 -4.7070 0.0050 15 6 3.5714 -0.6885 1.2643 16 6 2.0399 -0.7207 1.2500 17 1 1.6979 -1.7556 1.2383 18 7 1.5256 -0.0494 2.4463 19 6 1.4003 -0.7327 3.6012 20 8 1.7145 -1.9066 3.6504 21 6 0.8832 -0.0584 4.8028 22 6 0.7082 -0.6486 6.0223 23 6 0.2174 0.1796 6.9942 24 6 -0.0284 1.4594 6.5843 25 6 -0.5622 2.5343 7.4360 26 7 -0.7647 3.7636 6.9220 27 8 -0.8206 2.3133 8.6038 28 16 0.3895 1.6272 4.8846 29 1 -0.3633 0.5144 0.8897 30 1 -0.3633 0.5132 -0.8903 31 1 -0.3633 -1.0277 0.0005 32 1 1.6979 -1.7556 -1.2383 33 1 1.6572 -0.2207 -2.1398 34 1 3.9416 -1.2845 -2.0985 35 1 3.9142 0.3407 -1.3700 36 1 6.6720 -1.5382 -2.6387 37 1 3.9143 0.3409 1.3673 38 1 3.9417 -1.2824 2.0998 39 1 1.2754 0.8870 2.4071 40 1 0.9429 -1.6867 6.2058 41 1 0.0337 -0.1536 8.0049 42 1 -0.5583 3.9400 5.9908 43 1 -1.1169 4.4721 7.4833 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968404398.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:03 Heat of formation + Delta-G solvation = -24.401379 kcal Electronic energy + Delta-G solvation = -26526.353750 eV Core-core repulsion = 22698.450190 eV Total energy + Delta-G solvation = -3827.903559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.08402 -39.84083 -38.03323 -37.05738 -34.57515 -34.22724 -33.14395 -31.16716 -30.52172 -28.93632 -27.43299 -25.94358 -24.11795 -22.77904 -22.11918 -21.24652 -20.89571 -19.91937 -19.44621 -18.64563 -17.47793 -16.92320 -16.78837 -16.11311 -15.57702 -15.37703 -15.07825 -14.91661 -14.65736 -14.10207 -13.83750 -13.61035 -13.54938 -13.35239 -13.28996 -12.81895 -12.67520 -12.50674 -12.08336 -11.71009 -11.56621 -11.55119 -11.08735 -10.83683 -10.75002 -10.71040 -10.31628 -10.27243 -10.19597 -10.16020 -9.91516 -9.72188 -9.62657 -9.26615 -9.05981 -8.92245 -8.44005 -6.71534 -5.80570 -3.22633 -0.25881 0.88733 1.26405 1.76361 2.70867 2.93041 3.06387 3.13112 3.39348 3.46054 3.48503 4.37535 4.48798 4.63444 4.82262 4.99429 5.03161 5.21356 5.32524 5.41556 5.54164 5.55666 5.67261 5.82621 5.88253 5.89428 5.97440 6.09057 6.15008 6.21443 6.22456 6.44833 6.55431 6.58429 6.66124 6.71773 6.76560 6.90976 7.31090 7.49865 7.61419 7.66880 7.81319 8.15668 8.42894 9.19317 9.81415 10.36996 11.28343 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.020248 B = 0.002603 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.534474 B =10754.039204 C =11446.922853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.068 0.932 4 C -0.133 4.133 5 C 0.166 3.834 6 N -0.586 5.586 7 C -0.250 4.250 8 H 0.068 0.932 9 C 0.003 3.997 10 N -0.904 5.904 11 Si 0.903 3.097 12 H -0.287 1.287 13 H -0.291 1.291 14 H -0.278 1.278 15 C 0.141 3.859 16 C 0.132 3.868 17 H 0.090 0.910 18 N -0.712 5.712 19 C 0.580 3.420 20 O -0.513 6.513 21 C -0.207 4.207 22 C -0.079 4.079 23 C -0.058 4.058 24 C -0.248 4.248 25 C 0.598 3.402 26 N -0.849 5.849 27 O -0.528 6.528 28 S 0.180 5.820 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.020 0.980 36 H 0.254 0.746 37 H 0.018 0.982 38 H 0.059 0.941 39 H 0.391 0.609 40 H 0.163 0.837 41 H 0.160 0.840 42 H 0.401 0.599 43 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.679 11.397 11.372 22.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.086 0.914 4 C -0.173 4.173 5 C 0.040 3.960 6 N -0.309 5.309 7 C -0.380 4.380 8 H 0.085 0.915 9 C -0.196 4.196 10 N -0.548 5.548 11 Si 0.733 3.267 12 H -0.214 1.214 13 H -0.218 1.218 14 H -0.203 1.203 15 C 0.013 3.987 16 C 0.027 3.973 17 H 0.109 0.891 18 N -0.362 5.362 19 C 0.364 3.636 20 O -0.389 6.389 21 C -0.329 4.329 22 C -0.111 4.111 23 C -0.092 4.092 24 C -0.370 4.370 25 C 0.382 3.618 26 N -0.413 5.413 27 O -0.405 6.405 28 S 0.448 5.552 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.038 0.962 36 H 0.064 0.936 37 H 0.036 0.964 38 H 0.077 0.923 39 H 0.225 0.775 40 H 0.180 0.820 41 H 0.177 0.823 42 H 0.229 0.771 43 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -15.455 11.442 10.887 22.097 hybrid contribution 0.378 -0.965 0.529 1.164 sum -15.077 10.476 11.416 21.619 Atomic orbital electron populations 1.21868 0.95933 1.01710 1.00749 1.21323 0.94615 0.99720 0.95407 0.91389 1.22243 1.00649 0.99612 0.94758 1.20907 0.87288 0.97392 0.90411 1.44048 1.48015 1.39838 0.99012 1.19230 1.09760 1.02920 1.06074 0.91466 1.25013 0.97217 0.97561 0.99787 1.70033 1.37915 1.29141 1.17758 0.86266 0.78711 0.83633 0.78065 1.21390 1.21779 1.20344 1.21187 0.89786 0.96793 0.90928 1.21890 0.96980 0.97040 0.81354 0.89149 1.46038 1.65744 1.13936 1.10481 1.17027 0.78538 0.86311 0.81729 1.90875 1.49161 1.15076 1.83834 1.25131 1.10700 0.97400 0.99640 1.20638 0.98186 1.02279 0.90033 1.20612 0.96482 0.90626 1.01469 1.24722 1.14593 0.99432 0.98213 1.17035 0.76863 0.81748 0.86184 1.43678 1.69336 1.12172 1.16107 1.90877 1.51376 1.81984 1.16254 1.83824 1.58694 1.08011 1.04652 0.93542 0.92779 0.92782 0.92316 0.92566 0.89141 0.96235 0.93638 0.96419 0.92251 0.77493 0.81964 0.82252 0.77078 0.75780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.02 37.16 0.34 -1.42 16 2 C -0.09 -1.38 2.27 -90.58 -0.21 -1.58 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 4 C -0.13 -2.36 5.36 -26.61 -0.14 -2.50 16 5 C 0.17 3.78 5.33 -3.56 -0.02 3.76 16 6 N -0.59 -14.52 3.01 -172.10 -0.52 -15.03 16 7 C -0.25 -6.92 9.59 -15.06 -0.14 -7.07 16 8 H 0.07 1.88 7.89 -52.48 -0.41 1.46 16 9 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 10 N -0.90 -25.91 11.18 55.49 0.62 -25.29 16 11 Si 0.90 21.86 29.59 -169.99 -5.03 16.83 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 15 C 0.14 2.97 6.08 -3.70 -0.02 2.95 16 16 C 0.13 2.25 2.06 -67.81 -0.14 2.11 16 17 H 0.09 1.77 7.58 -51.93 -0.39 1.38 16 18 N -0.71 -9.71 4.37 -54.85 -0.24 -9.95 16 19 C 0.58 8.58 7.77 -12.63 -0.10 8.48 16 20 O -0.51 -9.69 16.48 5.26 0.09 -9.60 16 21 C -0.21 -2.36 6.46 -36.54 -0.24 -2.60 16 22 C -0.08 -0.83 9.88 -40.69 -0.40 -1.24 16 23 C -0.06 -0.56 9.88 -40.69 -0.40 -0.96 16 24 C -0.25 -2.27 6.46 -36.55 -0.24 -2.51 16 25 C 0.60 5.61 8.07 -12.64 -0.10 5.51 16 26 N -0.85 -4.54 8.87 30.37 0.27 -4.27 16 27 O -0.53 -6.85 17.65 5.25 0.09 -6.76 16 28 S 0.18 1.42 21.40 -107.50 -2.30 -0.88 16 29 H 0.05 0.48 7.36 -51.93 -0.38 0.10 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 2.34 6.04 -51.93 -0.31 2.02 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 1.35 7.93 -51.93 -0.41 0.94 16 39 H 0.39 4.19 7.41 -40.82 -0.30 3.89 16 40 H 0.16 1.65 8.04 -52.49 -0.42 1.23 16 41 H 0.16 1.34 8.04 -52.49 -0.42 0.92 16 42 H 0.40 1.31 7.93 -40.82 -0.32 0.98 16 43 H 0.41 1.54 8.93 -40.82 -0.36 1.17 16 LS Contribution 369.47 15.07 5.57 5.57 Total: -1.00 -33.82 369.47 -9.19 -43.02 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.84 Total: 3.45 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -1.90 Total: 2.91 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.13 Total: -54.54 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.18 Total: -16.36 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.30 Total: -0.88 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.82 -9.19 -43.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968404398.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.618 kcal (2) G-P(sol) polarization free energy of solvation -33.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds