Wall clock time and date at job start Tue Mar 31 2020 20:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.44910 * 2 1 4 4 C 1.53048 * 109.45881 * 240.03571 * 2 1 3 5 5 C 1.53186 * 109.30963 * 178.61652 * 4 2 1 6 6 N 1.47199 * 108.86176 * 54.64876 * 5 4 2 7 7 C 1.36935 * 120.81591 * 126.33430 * 6 5 4 8 8 H 1.08004 * 119.99817 * 207.53981 * 7 6 5 9 9 C 1.38804 * 120.00238 * 27.54180 * 7 6 5 10 10 N 1.31624 * 120.00025 * 17.25587 * 9 7 6 11 11 Si 1.86801 * 120.00311 * 197.25673 * 9 7 6 12 12 H 1.48505 * 109.47002 * 90.00337 * 11 9 7 13 13 H 1.48506 * 109.47209 * 209.99842 * 11 9 7 14 14 H 1.48497 * 109.47373 * 330.00036 * 11 9 7 15 15 C 1.46936 * 118.55490 * 306.47926 * 6 5 4 16 16 C 1.53035 * 109.46019 * 119.96697 * 2 1 3 17 17 H 1.08994 * 109.50151 * 61.43642 * 16 2 1 18 18 N 1.46503 * 109.52470 * 301.35207 * 16 2 1 19 19 C 1.34775 * 119.99906 * 155.14736 * 18 16 2 20 20 O 1.21622 * 120.00250 * 0.02562 * 19 18 16 21 21 C 1.47171 * 119.99883 * 180.02562 * 19 18 16 22 22 C 1.36613 * 125.16368 * 179.71797 * 21 19 18 23 23 C 1.36795 * 114.74570 * 179.78207 * 22 21 19 24 24 C 1.36618 * 114.74680 * 0.51083 * 23 22 21 25 25 C 1.47163 * 125.16441 * 179.70401 * 24 23 22 26 26 N 1.34770 * 120.00143 * 179.97438 * 25 24 23 27 27 O 1.21628 * 119.99815 * 359.97438 * 25 24 23 28 28 S 1.75835 * 125.16119 * 0.02562 * 21 19 18 29 29 H 1.08998 * 109.46749 * 300.03623 * 1 2 3 30 30 H 1.08997 * 109.47075 * 60.03761 * 1 2 3 31 31 H 1.09002 * 109.47171 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.49500 * 298.56104 * 4 2 1 33 33 H 1.08995 * 109.49552 * 58.66212 * 4 2 1 34 34 H 1.09001 * 109.58471 * 174.42245 * 5 4 2 35 35 H 1.09002 * 109.58463 * 294.69775 * 5 4 2 36 36 H 0.96996 * 120.00327 * 179.97438 * 10 9 7 37 37 H 1.08995 * 109.58629 * 293.67936 * 15 6 5 38 38 H 1.08992 * 109.58520 * 173.39613 * 15 6 5 39 39 H 0.97002 * 119.99628 * 335.14387 * 18 16 2 40 40 H 1.07998 * 122.62378 * 0.02562 * 22 21 19 41 41 H 1.07997 * 122.62880 * 180.20709 * 23 22 21 42 42 H 0.97003 * 120.00430 * 359.97438 * 26 25 24 43 43 H 0.97005 * 120.00279 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7207 -1.2502 5 6 3.5713 -0.6886 -1.2643 6 7 4.0708 -1.2499 0.0015 7 6 4.9787 -2.2750 0.0045 8 1 5.0127 -2.9639 0.8356 9 6 5.8555 -2.4287 -1.0606 10 7 6.0591 -1.4310 -1.8946 11 14 6.7464 -4.0514 -1.3104 12 1 5.9288 -4.9365 -2.1783 13 1 8.0598 -3.8007 -1.9565 14 1 6.9589 -4.7070 0.0050 15 6 3.5714 -0.6885 1.2643 16 6 2.0399 -0.7207 1.2500 17 1 1.6979 -1.7556 1.2383 18 7 1.5256 -0.0494 2.4463 19 6 1.4003 -0.7327 3.6012 20 8 1.7145 -1.9066 3.6504 21 6 0.8832 -0.0584 4.8028 22 6 0.7082 -0.6486 6.0223 23 6 0.2174 0.1796 6.9942 24 6 -0.0284 1.4594 6.5843 25 6 -0.5622 2.5343 7.4360 26 7 -0.7647 3.7636 6.9220 27 8 -0.8206 2.3133 8.6038 28 16 0.3895 1.6272 4.8846 29 1 -0.3633 0.5144 0.8897 30 1 -0.3633 0.5132 -0.8903 31 1 -0.3633 -1.0277 0.0005 32 1 1.6979 -1.7556 -1.2383 33 1 1.6572 -0.2207 -2.1398 34 1 3.9416 -1.2845 -2.0985 35 1 3.9142 0.3407 -1.3700 36 1 6.6720 -1.5382 -2.6387 37 1 3.9143 0.3409 1.3673 38 1 3.9417 -1.2824 2.0998 39 1 1.2754 0.8870 2.4071 40 1 0.9429 -1.6867 6.2058 41 1 0.0337 -0.1536 8.0049 42 1 -0.5583 3.9400 5.9908 43 1 -1.1169 4.4721 7.4833 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968404398.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:02 Heat of formation + Delta-G solvation = -49.656869 kcal Electronic energy + Delta-G solvation = -26527.448910 eV Core-core repulsion = 22698.450190 eV Total energy + Delta-G solvation = -3828.998720 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.25711 -40.67364 -39.36737 -38.03896 -36.22614 -34.88937 -34.58457 -33.04030 -31.59418 -30.26341 -28.96554 -26.94839 -25.83552 -24.13006 -22.90169 -22.72992 -22.17690 -21.31205 -20.26838 -19.71697 -18.75036 -18.13127 -17.82330 -17.18512 -16.79607 -16.51875 -16.34332 -15.98636 -15.94283 -15.51227 -15.27628 -15.11881 -14.98759 -14.55127 -14.34669 -14.10025 -13.74576 -13.59184 -13.39133 -13.20877 -13.13525 -12.76744 -12.66391 -12.33597 -12.30595 -12.03727 -11.96240 -11.70069 -11.57285 -11.45432 -11.28974 -11.12105 -10.88796 -10.62242 -10.30671 -9.99186 -9.71488 -8.71249 -7.91480 -5.36292 -1.08612 0.13261 0.48003 0.92653 1.44255 1.45536 1.54648 1.87485 1.92779 2.09753 2.32401 2.49531 3.22831 3.52868 3.70950 3.77125 3.83511 3.99319 4.03327 4.09525 4.23126 4.42980 4.49201 4.64993 4.76091 4.81819 4.87888 4.92863 4.95168 5.03610 5.07195 5.11862 5.15479 5.20979 5.39447 5.45504 5.53375 5.62661 5.72897 5.77350 6.18036 6.34834 6.37548 7.03232 7.08515 7.12219 7.80996 8.31074 9.14384 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.020248 B = 0.002603 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.534474 B =10754.039204 C =11446.922853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.084 4.084 3 H 0.084 0.916 4 C -0.122 4.122 5 C 0.170 3.830 6 N -0.606 5.606 7 C -0.266 4.266 8 H 0.053 0.947 9 C -0.043 4.043 10 N -0.928 5.928 11 Si 0.964 3.036 12 H -0.282 1.282 13 H -0.289 1.289 14 H -0.276 1.276 15 C 0.143 3.857 16 C 0.150 3.850 17 H 0.062 0.938 18 N -0.699 5.699 19 C 0.582 3.418 20 O -0.564 6.564 21 C -0.245 4.245 22 C -0.073 4.073 23 C -0.069 4.069 24 C -0.250 4.250 25 C 0.596 3.404 26 N -0.826 5.826 27 O -0.568 6.568 28 S 0.270 5.730 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.007 0.993 36 H 0.252 0.748 37 H 0.023 0.977 38 H 0.031 0.969 39 H 0.410 0.590 40 H 0.157 0.843 41 H 0.166 0.834 42 H 0.414 0.586 43 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.696 13.696 11.479 25.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 H 0.102 0.898 4 C -0.162 4.162 5 C 0.045 3.955 6 N -0.330 5.330 7 C -0.396 4.396 8 H 0.071 0.929 9 C -0.239 4.239 10 N -0.574 5.574 11 Si 0.792 3.208 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.201 1.201 15 C 0.015 3.985 16 C 0.044 3.956 17 H 0.080 0.920 18 N -0.350 5.350 19 C 0.368 3.632 20 O -0.444 6.444 21 C -0.367 4.367 22 C -0.107 4.107 23 C -0.102 4.102 24 C -0.372 4.372 25 C 0.380 3.620 26 N -0.391 5.391 27 O -0.449 6.449 28 S 0.540 5.460 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.025 0.975 36 H 0.061 0.939 37 H 0.041 0.959 38 H 0.049 0.951 39 H 0.247 0.753 40 H 0.175 0.825 41 H 0.184 0.816 42 H 0.245 0.755 43 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -17.513 13.833 10.971 24.868 hybrid contribution 1.011 -1.566 0.554 1.945 sum -16.501 12.267 11.526 23.572 Atomic orbital electron populations 1.21799 0.92776 1.01879 1.02986 1.21262 0.97071 0.99498 0.92447 0.89801 1.22073 0.96557 0.99895 0.97639 1.20784 0.90727 0.95525 0.88465 1.44263 1.48147 1.39768 1.00803 1.19384 1.10538 1.03757 1.05942 0.92886 1.25683 0.98160 1.00410 0.99635 1.70156 1.38551 1.30599 1.18074 0.85328 0.77553 0.80069 0.77874 1.20894 1.21538 1.20079 1.21226 0.92691 0.95977 0.88561 1.21367 0.93878 0.96571 0.83832 0.91959 1.45750 1.65239 1.14661 1.09326 1.17434 0.77442 0.85791 0.82537 1.90849 1.51339 1.17474 1.84735 1.24826 1.13213 1.00227 0.98427 1.20666 0.97568 1.02348 0.90078 1.20622 0.97131 0.90824 1.01649 1.24951 1.13488 0.99355 0.99421 1.17093 0.76677 0.82628 0.85617 1.43524 1.67621 1.11071 1.16895 1.90867 1.53322 1.82749 1.17932 1.83375 1.56254 1.03933 1.02478 0.91276 0.90595 0.93706 0.93505 0.89661 0.92680 0.97486 0.93853 0.95887 0.95062 0.75306 0.82545 0.81646 0.75535 0.74507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.02 71.98 0.65 -2.15 16 2 C -0.08 -2.33 2.27 -10.76 -0.02 -2.36 16 3 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 4 C -0.12 -4.20 5.36 30.67 0.16 -4.04 16 5 C 0.17 7.92 5.33 86.31 0.46 8.38 16 6 N -0.61 -31.02 3.01 -698.39 -2.10 -33.12 16 7 C -0.27 -15.29 9.59 84.03 0.81 -14.49 16 8 H 0.05 3.12 7.89 -2.91 -0.02 3.10 16 9 C -0.04 -2.44 4.92 84.86 0.42 -2.02 16 10 N -0.93 -54.60 11.18 21.65 0.24 -54.36 16 11 Si 0.96 46.02 29.59 68.60 2.03 48.05 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 13 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 14 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 15 C 0.14 6.16 6.08 86.36 0.53 6.69 16 16 C 0.15 5.04 2.06 45.07 0.09 5.13 16 17 H 0.06 2.50 7.58 -2.39 -0.02 2.48 16 18 N -0.70 -18.10 4.37 -445.69 -1.95 -20.04 16 19 C 0.58 17.04 7.77 86.59 0.67 17.72 16 20 O -0.56 -22.15 16.48 -4.10 -0.07 -22.22 16 21 C -0.25 -5.29 6.46 24.24 0.16 -5.13 16 22 C -0.07 -1.51 9.88 21.55 0.21 -1.29 16 23 C -0.07 -1.23 9.88 21.55 0.21 -1.01 16 24 C -0.25 -3.98 6.46 24.24 0.16 -3.83 16 25 C 0.60 9.77 8.07 86.59 0.70 10.47 16 26 N -0.83 -6.10 8.87 -176.08 -1.56 -7.66 16 27 O -0.57 -14.00 17.65 -4.12 -0.07 -14.07 16 28 S 0.27 3.36 21.40 -56.49 -1.21 2.15 16 29 H 0.07 1.12 7.36 -2.39 -0.02 1.10 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.05 2.94 6.04 -2.39 -0.01 2.93 16 35 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 37 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.03 1.49 7.93 -2.39 -0.02 1.47 16 39 H 0.41 7.47 7.41 -92.71 -0.69 6.78 16 40 H 0.16 3.30 8.04 -2.91 -0.02 3.27 16 41 H 0.17 2.69 8.04 -2.91 -0.02 2.67 16 42 H 0.41 0.97 7.93 -92.71 -0.74 0.23 16 43 H 0.42 1.83 8.93 -92.70 -0.83 1.00 16 Total: -1.00 -77.83 369.47 -0.66 -78.49 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -1.17 Total: 10.72 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 5.20 Total: 12.05 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -5.37 Total: -115.18 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -0.14 Total: -36.29 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -1.21 Total: 2.15 kcal Total: -77.83 -0.66 -78.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968404398.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.836 kcal (2) G-P(sol) polarization free energy of solvation -77.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds