Wall clock time and date at job start Tue Mar 31 2020 20:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.45618 * 2 1 4 4 C 1.53077 * 109.45004 * 119.81309 * 2 1 3 5 5 C 1.53191 * 109.29326 * 181.24363 * 4 2 1 6 6 N 1.46928 * 108.89396 * 305.58207 * 5 4 2 7 7 C 1.36936 * 120.62640 * 233.55879 * 6 5 4 8 8 H 1.07992 * 120.00660 * 27.67270 * 7 6 5 9 9 C 1.38816 * 119.99831 * 207.67021 * 7 6 5 10 10 N 1.31620 * 119.99978 * 17.35967 * 9 7 6 11 11 Si 1.86803 * 120.00186 * 197.36330 * 9 7 6 12 12 H 1.48505 * 109.46752 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.47225 * 119.99636 * 11 9 7 14 14 H 1.48494 * 109.47200 * 239.99956 * 11 9 7 15 15 C 1.46925 * 118.74136 * 53.53533 * 6 5 4 16 16 C 1.53039 * 109.46292 * 240.02526 * 2 1 3 17 17 H 1.09007 * 109.49379 * 58.65945 * 16 2 1 18 18 N 1.46498 * 109.52426 * 298.58533 * 16 2 1 19 19 C 1.34775 * 120.00386 * 155.14631 * 18 16 2 20 20 O 1.21687 * 119.99865 * 359.97438 * 19 18 16 21 21 C 1.46732 * 120.00331 * 179.97438 * 19 18 16 22 22 C 1.34873 * 125.05670 * 179.97438 * 21 19 18 23 23 C 1.38946 * 113.65229 * 179.97438 * 22 21 19 24 24 C 1.47334 * 122.95796 * 180.02562 * 23 22 21 25 25 N 1.34776 * 119.99644 * 179.97438 * 24 23 22 26 26 O 1.21615 * 120.00030 * 0.02562 * 24 23 22 27 27 C 1.36661 * 114.07468 * 0.02562 * 23 22 21 28 28 S 1.70597 * 110.53290 * 359.75073 * 27 23 22 29 29 H 1.09003 * 109.46949 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46879 * 299.97314 * 1 2 3 31 31 H 1.08997 * 109.47314 * 59.97543 * 1 2 3 32 32 H 1.08997 * 109.39219 * 61.37365 * 4 2 1 33 33 H 1.09000 * 109.62137 * 301.25934 * 4 2 1 34 34 H 1.08993 * 109.58857 * 185.72053 * 5 4 2 35 35 H 1.09002 * 109.58480 * 65.43665 * 5 4 2 36 36 H 0.97006 * 119.99919 * 180.02562 * 10 9 7 37 37 H 1.09004 * 109.58363 * 66.17876 * 15 6 5 38 38 H 1.08992 * 109.58662 * 186.60676 * 15 6 5 39 39 H 0.97001 * 119.99605 * 335.13970 * 18 16 2 40 40 H 1.07995 * 123.17132 * 0.02562 * 22 21 19 41 41 H 0.96998 * 120.00368 * 0.02562 * 25 24 23 42 42 H 0.97001 * 119.99834 * 179.97438 * 25 24 23 43 43 H 1.08000 * 124.72938 * 179.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7176 1.2524 5 6 3.5713 -0.6884 1.2644 6 7 4.0679 -1.2488 0.0002 7 6 4.9758 -2.2739 0.0005 8 1 5.0085 -2.9661 0.8287 9 6 5.8541 -2.4233 -1.0640 10 7 6.0605 -1.4217 -1.8926 11 14 6.7431 -4.0461 -1.3207 12 1 6.3399 -5.0044 -0.2604 13 1 6.3857 -4.6013 -2.6509 14 1 8.2097 -3.8228 -1.2553 15 6 3.5714 -0.6887 -1.2641 16 6 2.0399 -0.7209 -1.2499 17 1 1.6572 -0.2210 -2.1398 18 7 1.5802 -2.1118 -1.2347 19 6 1.4548 -2.7928 -2.3910 20 8 1.7230 -2.2522 -3.4477 21 6 0.9948 -4.1861 -2.3757 22 6 0.8328 -4.9604 -3.4681 23 6 0.3863 -6.2443 -3.1800 24 6 0.1410 -7.2596 -4.2191 25 7 -0.2917 -8.4880 -3.8721 26 8 0.3299 -6.9896 -5.3897 27 6 0.1947 -6.4821 -1.8479 28 16 0.5796 -5.0959 -0.9312 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5134 0.8903 31 1 -0.3634 0.5142 -0.8897 32 1 1.6958 -1.7518 1.2421 33 1 1.6593 -0.2159 2.1421 34 1 3.9416 -1.2841 2.0986 35 1 3.9163 0.3404 1.3686 36 1 6.6740 -1.5263 -2.6367 37 1 3.9143 0.3408 -1.3673 38 1 3.9417 -1.2847 -2.0981 39 1 1.3661 -2.5426 -0.3924 40 1 1.0321 -4.6154 -4.4718 41 1 -0.4420 -8.7034 -2.9384 42 1 -0.4535 -9.1563 -4.5562 43 1 -0.1488 -7.4183 -1.4333 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968682824.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:14 Heat of formation + Delta-G solvation = -23.967921 kcal Electronic energy + Delta-G solvation = -27635.083552 eV Core-core repulsion = 23807.198789 eV Total energy + Delta-G solvation = -3827.884763 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.07939 -39.55566 -37.79449 -36.61935 -34.16154 -33.94698 -32.87752 -31.05694 -30.27878 -28.91085 -27.33369 -25.63746 -24.19433 -23.40199 -22.00299 -21.12148 -20.50767 -19.23137 -18.85774 -18.61808 -17.24059 -17.11012 -16.70556 -15.59144 -15.27858 -15.08432 -14.89124 -14.59448 -14.26526 -13.90489 -13.78640 -13.55276 -13.33788 -13.19022 -13.09395 -12.73907 -12.62277 -12.51816 -11.97248 -11.60958 -11.44251 -11.32252 -11.12004 -10.92232 -10.73327 -10.52870 -10.22799 -10.21309 -9.95014 -9.94181 -9.74965 -9.57439 -9.48573 -9.04393 -8.75155 -8.46437 -8.41205 -6.65695 -5.76630 -3.19441 0.30913 1.28393 1.65060 1.69112 3.16125 3.26064 3.38921 3.45205 3.48881 3.54759 3.72060 4.50715 4.58930 4.81968 5.05171 5.10596 5.20047 5.20719 5.32295 5.42004 5.54259 5.67113 5.84082 5.89963 5.93025 6.01901 6.12012 6.15758 6.26181 6.33571 6.41356 6.51065 6.53050 6.61312 6.72419 6.84664 6.94879 7.07012 7.34038 7.66646 7.81001 7.97930 8.04829 8.46628 8.64945 9.21653 9.86003 10.41291 11.31330 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.010539 B = 0.004652 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.115354 B = 6017.963473 C = 7448.445566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.080 0.920 4 C -0.129 4.129 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.255 4.255 8 H 0.064 0.936 9 C 0.009 3.991 10 N -0.896 5.896 11 Si 0.892 3.108 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.290 1.290 15 C 0.159 3.841 16 C 0.126 3.874 17 H 0.079 0.921 18 N -0.692 5.692 19 C 0.586 3.414 20 O -0.527 6.527 21 C -0.247 4.247 22 C -0.025 4.025 23 C -0.162 4.162 24 C 0.584 3.416 25 N -0.852 5.852 26 O -0.534 6.534 27 C -0.215 4.215 28 S 0.252 5.748 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.018 0.982 36 H 0.254 0.746 37 H 0.027 0.973 38 H 0.098 0.902 39 H 0.391 0.609 40 H 0.163 0.837 41 H 0.399 0.601 42 H 0.405 0.595 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.515 -8.665 5.835 19.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.098 0.902 4 C -0.169 4.169 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.385 4.385 8 H 0.082 0.918 9 C -0.191 4.191 10 N -0.539 5.539 11 Si 0.722 3.278 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.217 1.217 15 C 0.032 3.968 16 C 0.021 3.979 17 H 0.097 0.903 18 N -0.342 5.342 19 C 0.370 3.630 20 O -0.405 6.405 21 C -0.367 4.367 22 C -0.055 4.055 23 C -0.180 4.180 24 C 0.368 3.632 25 N -0.416 5.416 26 O -0.411 6.411 27 C -0.355 4.355 28 S 0.521 5.479 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.036 0.964 36 H 0.064 0.936 37 H 0.045 0.955 38 H 0.116 0.884 39 H 0.226 0.774 40 H 0.181 0.819 41 H 0.228 0.772 42 H 0.236 0.764 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -16.008 -7.531 5.828 18.627 hybrid contribution 0.360 -2.002 -1.046 2.288 sum -15.648 -9.534 4.782 18.937 Atomic orbital electron populations 1.21860 0.95950 1.01321 1.01109 1.21330 0.94637 1.00021 0.95373 0.90207 1.22095 0.99343 0.99300 0.96145 1.20928 0.90616 0.96617 0.90296 1.43988 1.48286 1.39615 0.99121 1.19098 1.10069 1.03112 1.06186 0.91794 1.24989 0.97147 0.97115 0.99820 1.70000 1.37371 1.28905 1.17663 0.86386 0.79327 0.84103 0.77960 1.20275 1.21438 1.21666 1.21223 0.86505 0.97958 0.91089 1.21866 0.99129 0.79778 0.97173 0.90277 1.45693 1.66713 1.14368 1.07387 1.16800 0.78014 0.83451 0.84756 1.90831 1.50530 1.68528 1.30654 1.24425 1.14699 1.00399 0.97217 1.20308 0.94152 0.90439 1.00611 1.18997 1.10198 0.96181 0.92641 1.17644 0.75929 0.81852 0.87764 1.43656 1.71227 1.14173 1.12530 1.90860 1.51376 1.79855 1.19036 1.26027 1.06532 1.05335 0.97613 1.83058 1.56941 1.00294 1.07651 0.93159 0.93031 0.92974 0.92939 0.92598 0.92791 0.96378 0.93583 0.95475 0.88369 0.77353 0.81912 0.77216 0.76399 0.80897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.05 37.16 0.34 -1.45 16 2 C -0.09 -1.43 2.47 -90.56 -0.22 -1.65 16 3 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 4 C -0.13 -1.95 5.21 -26.59 -0.14 -2.09 16 5 C 0.14 2.74 6.51 -3.71 -0.02 2.71 16 6 N -0.59 -13.93 2.92 -172.33 -0.50 -14.43 16 7 C -0.26 -6.79 9.59 -15.06 -0.14 -6.93 16 8 H 0.06 1.67 7.89 -52.49 -0.41 1.26 16 9 C 0.01 0.24 4.91 -17.43 -0.09 0.16 16 10 N -0.90 -26.46 11.19 55.49 0.62 -25.84 16 11 Si 0.89 22.14 29.59 -169.99 -5.03 17.11 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 15 C 0.16 3.76 4.91 -3.71 -0.02 3.74 16 16 C 0.13 2.35 2.24 -67.81 -0.15 2.20 16 17 H 0.08 1.53 7.58 -51.93 -0.39 1.13 16 18 N -0.69 -12.24 4.25 -54.98 -0.23 -12.47 16 19 C 0.59 11.34 7.75 -12.83 -0.10 11.24 16 20 O -0.53 -12.19 16.46 5.20 0.09 -12.10 16 21 C -0.25 -3.97 6.37 -37.35 -0.24 -4.21 16 22 C -0.02 -0.39 9.47 -40.51 -0.38 -0.78 16 23 C -0.16 -2.08 5.82 -106.50 -0.62 -2.70 16 24 C 0.58 7.49 8.06 -12.56 -0.10 7.38 16 25 N -0.85 -6.38 8.84 30.41 0.27 -6.11 16 26 O -0.53 -9.20 17.52 5.26 0.09 -9.11 16 27 C -0.22 -2.06 10.41 30.16 0.31 -1.74 16 28 S 0.25 2.82 22.09 -107.50 -2.37 0.45 16 29 H 0.05 0.60 7.54 -51.93 -0.39 0.21 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.77 6.42 -51.93 -0.33 0.44 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.25 7.36 8.31 -40.82 -0.34 7.03 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.10 2.76 6.03 -51.93 -0.31 2.45 16 39 H 0.39 6.14 5.73 -40.82 -0.23 5.90 16 40 H 0.16 2.87 7.95 -52.49 -0.42 2.45 16 41 H 0.40 1.69 7.29 -40.82 -0.30 1.39 16 42 H 0.40 2.46 8.93 -40.82 -0.36 2.10 16 43 H 0.17 0.88 6.99 -52.49 -0.37 0.51 16 LS Contribution 364.38 15.07 5.49 5.49 Total: -1.00 -35.26 364.38 -8.77 -44.02 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.61 Total: 7.10 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -1.58 Total: 5.89 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: 0.15 Total: -58.85 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: 0.18 Total: -21.21 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -2.37 Total: 0.45 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.26 -8.77 -44.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968682824.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.056 kcal (2) G-P(sol) polarization free energy of solvation -35.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds