Wall clock time and date at job start Tue Mar 31 2020 20:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.45618 * 2 1 4 4 C 1.53077 * 109.45004 * 119.81309 * 2 1 3 5 5 C 1.53191 * 109.29326 * 181.24363 * 4 2 1 6 6 N 1.46928 * 108.89396 * 305.58207 * 5 4 2 7 7 C 1.36936 * 120.62640 * 233.55879 * 6 5 4 8 8 H 1.07992 * 120.00660 * 27.67270 * 7 6 5 9 9 C 1.38816 * 119.99831 * 207.67021 * 7 6 5 10 10 N 1.31620 * 119.99978 * 17.35967 * 9 7 6 11 11 Si 1.86803 * 120.00186 * 197.36330 * 9 7 6 12 12 H 1.48505 * 109.46752 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.47225 * 119.99636 * 11 9 7 14 14 H 1.48494 * 109.47200 * 239.99956 * 11 9 7 15 15 C 1.46925 * 118.74136 * 53.53533 * 6 5 4 16 16 C 1.53039 * 109.46292 * 240.02526 * 2 1 3 17 17 H 1.09007 * 109.49379 * 58.65945 * 16 2 1 18 18 N 1.46498 * 109.52426 * 298.58533 * 16 2 1 19 19 C 1.34775 * 120.00386 * 155.14631 * 18 16 2 20 20 O 1.21687 * 119.99865 * 359.97438 * 19 18 16 21 21 C 1.46732 * 120.00331 * 179.97438 * 19 18 16 22 22 C 1.34873 * 125.05670 * 179.97438 * 21 19 18 23 23 C 1.38946 * 113.65229 * 179.97438 * 22 21 19 24 24 C 1.47334 * 122.95796 * 180.02562 * 23 22 21 25 25 N 1.34776 * 119.99644 * 179.97438 * 24 23 22 26 26 O 1.21615 * 120.00030 * 0.02562 * 24 23 22 27 27 C 1.36661 * 114.07468 * 0.02562 * 23 22 21 28 28 S 1.70597 * 110.53290 * 359.75073 * 27 23 22 29 29 H 1.09003 * 109.46949 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46879 * 299.97314 * 1 2 3 31 31 H 1.08997 * 109.47314 * 59.97543 * 1 2 3 32 32 H 1.08997 * 109.39219 * 61.37365 * 4 2 1 33 33 H 1.09000 * 109.62137 * 301.25934 * 4 2 1 34 34 H 1.08993 * 109.58857 * 185.72053 * 5 4 2 35 35 H 1.09002 * 109.58480 * 65.43665 * 5 4 2 36 36 H 0.97006 * 119.99919 * 180.02562 * 10 9 7 37 37 H 1.09004 * 109.58363 * 66.17876 * 15 6 5 38 38 H 1.08992 * 109.58662 * 186.60676 * 15 6 5 39 39 H 0.97001 * 119.99605 * 335.13970 * 18 16 2 40 40 H 1.07995 * 123.17132 * 0.02562 * 22 21 19 41 41 H 0.96998 * 120.00368 * 0.02562 * 25 24 23 42 42 H 0.97001 * 119.99834 * 179.97438 * 25 24 23 43 43 H 1.08000 * 124.72938 * 179.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7176 1.2524 5 6 3.5713 -0.6884 1.2644 6 7 4.0679 -1.2488 0.0002 7 6 4.9758 -2.2739 0.0005 8 1 5.0085 -2.9661 0.8287 9 6 5.8541 -2.4233 -1.0640 10 7 6.0605 -1.4217 -1.8926 11 14 6.7431 -4.0461 -1.3207 12 1 6.3399 -5.0044 -0.2604 13 1 6.3857 -4.6013 -2.6509 14 1 8.2097 -3.8228 -1.2553 15 6 3.5714 -0.6887 -1.2641 16 6 2.0399 -0.7209 -1.2499 17 1 1.6572 -0.2210 -2.1398 18 7 1.5802 -2.1118 -1.2347 19 6 1.4548 -2.7928 -2.3910 20 8 1.7230 -2.2522 -3.4477 21 6 0.9948 -4.1861 -2.3757 22 6 0.8328 -4.9604 -3.4681 23 6 0.3863 -6.2443 -3.1800 24 6 0.1410 -7.2596 -4.2191 25 7 -0.2917 -8.4880 -3.8721 26 8 0.3299 -6.9896 -5.3897 27 6 0.1947 -6.4821 -1.8479 28 16 0.5796 -5.0959 -0.9312 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5134 0.8903 31 1 -0.3634 0.5142 -0.8897 32 1 1.6958 -1.7518 1.2421 33 1 1.6593 -0.2159 2.1421 34 1 3.9416 -1.2841 2.0986 35 1 3.9163 0.3404 1.3686 36 1 6.6740 -1.5263 -2.6367 37 1 3.9143 0.3408 -1.3673 38 1 3.9417 -1.2847 -2.0981 39 1 1.3661 -2.5426 -0.3924 40 1 1.0321 -4.6154 -4.4718 41 1 -0.4420 -8.7034 -2.9384 42 1 -0.4535 -9.1563 -4.5562 43 1 -0.1488 -7.4183 -1.4333 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968682824.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:13 Heat of formation + Delta-G solvation = -51.777182 kcal Electronic energy + Delta-G solvation = -27636.289453 eV Core-core repulsion = 23807.198789 eV Total energy + Delta-G solvation = -3829.090663 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.32041 -40.81892 -39.24576 -37.81371 -35.94523 -34.83311 -34.41268 -32.84669 -31.59163 -30.29178 -28.90634 -26.67601 -25.88710 -24.75455 -23.44841 -22.73950 -21.70343 -20.48191 -20.04523 -19.93202 -18.61856 -18.16383 -18.06796 -16.96392 -16.77664 -16.59763 -16.19652 -15.85864 -15.71682 -15.58160 -15.12728 -14.83649 -14.78926 -14.69711 -14.19288 -14.06182 -13.80421 -13.73073 -13.57373 -13.16068 -12.98578 -12.77248 -12.63306 -12.48493 -12.38867 -12.19466 -11.93341 -11.55513 -11.37108 -11.27375 -11.09155 -11.06977 -10.77826 -10.55317 -10.23166 -9.94288 -9.66459 -8.65126 -7.86503 -5.30475 -0.69436 0.28684 0.53964 0.65765 1.37829 1.41968 1.49890 1.95364 2.15736 2.35622 2.48033 2.57390 3.30437 3.67553 3.72175 3.86510 3.94879 3.99604 4.02911 4.09843 4.13164 4.51829 4.58536 4.67914 4.72332 4.79139 4.88477 4.95265 4.97971 4.99568 5.09481 5.19393 5.25497 5.27691 5.47759 5.50973 5.60285 5.67710 5.71795 5.83614 6.38769 6.39143 6.53341 7.14319 7.20226 7.26518 7.88361 8.39008 9.18763 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.010539 B = 0.004652 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.115354 B = 6017.963473 C = 7448.445566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.088 4.088 3 H 0.079 0.921 4 C -0.117 4.117 5 C 0.135 3.865 6 N -0.600 5.600 7 C -0.244 4.244 8 H 0.077 0.923 9 C -0.052 4.052 10 N -0.935 5.935 11 Si 0.945 3.055 12 H -0.250 1.250 13 H -0.308 1.308 14 H -0.293 1.293 15 C 0.169 3.831 16 C 0.136 3.864 17 H 0.064 0.936 18 N -0.680 5.680 19 C 0.578 3.422 20 O -0.584 6.584 21 C -0.298 4.298 22 C -0.034 4.034 23 C -0.190 4.190 24 C 0.582 3.418 25 N -0.821 5.821 26 O -0.594 6.594 27 C -0.172 4.172 28 S 0.331 5.669 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.013 0.987 36 H 0.243 0.757 37 H -0.001 1.001 38 H 0.046 0.954 39 H 0.404 0.596 40 H 0.125 0.875 41 H 0.420 0.580 42 H 0.415 0.585 43 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.418 -11.436 10.342 24.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.107 4.107 3 H 0.097 0.903 4 C -0.156 4.156 5 C 0.010 3.990 6 N -0.324 5.324 7 C -0.374 4.374 8 H 0.094 0.906 9 C -0.247 4.247 10 N -0.582 5.582 11 Si 0.775 3.225 12 H -0.174 1.174 13 H -0.237 1.237 14 H -0.220 1.220 15 C 0.042 3.958 16 C 0.029 3.971 17 H 0.082 0.918 18 N -0.330 5.330 19 C 0.365 3.635 20 O -0.466 6.466 21 C -0.418 4.418 22 C -0.066 4.066 23 C -0.207 4.207 24 C 0.366 3.634 25 N -0.386 5.386 26 O -0.476 6.476 27 C -0.311 4.311 28 S 0.599 5.401 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.080 0.920 35 H 0.031 0.969 36 H 0.052 0.948 37 H 0.017 0.983 38 H 0.065 0.935 39 H 0.242 0.758 40 H 0.142 0.858 41 H 0.252 0.748 42 H 0.248 0.752 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -18.964 -10.364 10.458 24.009 hybrid contribution 1.232 -1.169 -2.330 2.883 sum -17.733 -11.532 8.128 22.661 Atomic orbital electron populations 1.21784 0.92924 1.02248 1.02434 1.21302 0.96999 0.99262 0.93161 0.90310 1.21990 0.95597 1.00512 0.97453 1.21172 0.93722 0.96037 0.88085 1.44201 1.48071 1.39500 1.00614 1.19497 1.08951 1.03454 1.05540 0.90588 1.25691 0.98926 0.99603 1.00482 1.70175 1.38770 1.30848 1.18378 0.85519 0.78100 0.81573 0.77354 1.17372 1.23663 1.21980 1.20870 0.89935 0.95145 0.89825 1.21567 0.95406 0.81014 0.99074 0.91796 1.45528 1.65996 1.13878 1.07598 1.17379 0.77049 0.84860 0.84238 1.90787 1.52944 1.70276 1.32581 1.24158 1.17696 0.99413 1.00486 1.20254 0.94659 0.92429 0.99271 1.18838 1.12513 0.95043 0.94319 1.17729 0.75705 0.83106 0.86838 1.43377 1.68735 1.12305 1.14148 1.90837 1.54376 1.81089 1.21274 1.26679 1.01877 1.06789 0.95796 1.82705 1.54801 0.98817 1.03786 0.92422 0.90122 0.93309 0.91865 0.88557 0.92029 0.96888 0.94812 0.98329 0.93542 0.75844 0.85752 0.74786 0.75216 0.75087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.05 71.98 0.65 -2.23 16 2 C -0.09 -2.48 2.47 -10.75 -0.03 -2.51 16 3 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 4 C -0.12 -3.07 5.21 30.68 0.16 -2.91 16 5 C 0.13 4.94 6.51 86.36 0.56 5.50 16 6 N -0.60 -28.69 2.92 -699.12 -2.04 -30.73 16 7 C -0.24 -13.00 9.59 84.03 0.81 -12.20 16 8 H 0.08 3.82 7.89 -2.91 -0.02 3.80 16 9 C -0.05 -2.98 4.91 84.86 0.42 -2.56 16 10 N -0.93 -58.59 11.19 21.65 0.24 -58.35 16 11 Si 0.95 46.57 29.59 68.60 2.03 48.60 16 12 H -0.25 -11.07 7.11 99.48 0.71 -10.36 16 13 H -0.31 -16.11 7.11 99.48 0.71 -15.40 16 14 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 15 C 0.17 8.46 4.91 86.36 0.42 8.88 16 16 C 0.14 5.19 2.24 45.07 0.10 5.29 16 17 H 0.06 2.64 7.58 -2.38 -0.02 2.62 16 18 N -0.68 -24.12 4.25 -446.09 -1.90 -26.01 16 19 C 0.58 23.50 7.75 86.46 0.67 24.17 16 20 O -0.58 -29.60 16.46 -4.31 -0.07 -29.67 16 21 C -0.30 -9.65 6.37 23.72 0.15 -9.50 16 22 C -0.03 -1.14 9.47 21.67 0.21 -0.93 16 23 C -0.19 -4.62 5.82 -21.08 -0.12 -4.74 16 24 C 0.58 14.33 8.06 86.64 0.70 15.02 16 25 N -0.82 -9.60 8.84 -175.95 -1.56 -11.15 16 26 O -0.59 -21.30 17.52 -4.08 -0.07 -21.38 16 27 C -0.17 -2.45 10.41 67.45 0.70 -1.74 16 28 S 0.33 6.10 22.09 -56.49 -1.25 4.86 16 29 H 0.06 1.14 7.54 -2.39 -0.02 1.12 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.56 6.42 -2.39 -0.02 1.55 16 33 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.06 2.15 7.93 -2.39 -0.02 2.14 16 35 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.24 15.10 8.31 -92.70 -0.77 14.33 16 37 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 38 H 0.05 2.82 6.03 -2.39 -0.01 2.80 16 39 H 0.40 11.83 5.73 -92.71 -0.53 11.30 16 40 H 0.12 5.00 7.95 -2.91 -0.02 4.98 16 41 H 0.42 1.31 7.29 -92.71 -0.68 0.63 16 42 H 0.42 3.86 8.93 -92.71 -0.83 3.03 16 43 H 0.23 0.48 6.99 -2.91 -0.02 0.46 16 Total: -1.00 -87.98 364.38 -0.16 -88.14 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -0.95 Total: 16.15 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: 5.40 Total: 19.55 kcal Atomic # 7 Polarization: -120.99 SS G_CDS: -5.25 Total: -126.24 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: -0.14 Total: -51.05 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Atomic # 16 Polarization: 6.10 SS G_CDS: -1.25 Total: 4.86 kcal Total: -87.98 -0.16 -88.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968682824.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.367 kcal (2) G-P(sol) polarization free energy of solvation -87.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds