Wall clock time and date at job start Tue Mar 31 2020 20:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.46369 * 2 1 4 4 C 1.53045 * 109.45970 * 240.02567 * 2 1 3 5 5 C 1.53193 * 109.31104 * 178.61457 * 4 2 1 6 6 N 1.46926 * 108.77522 * 54.64154 * 5 4 2 7 7 C 1.36932 * 120.63215 * 126.36742 * 6 5 4 8 8 H 1.08005 * 120.00170 * 332.78236 * 7 6 5 9 9 C 1.38809 * 120.00091 * 153.05655 * 7 6 5 10 10 N 1.31622 * 119.99839 * 159.13375 * 9 7 6 11 11 Si 1.86792 * 120.00094 * 339.13715 * 9 7 6 12 12 H 1.48496 * 109.47335 * 93.09301 * 11 9 7 13 13 H 1.48508 * 109.47292 * 213.09529 * 11 9 7 14 14 H 1.48507 * 109.47235 * 333.09221 * 11 9 7 15 15 C 1.46924 * 118.73808 * 306.63663 * 6 5 4 16 16 C 1.52766 * 109.00532 * 53.31230 * 15 6 5 17 17 H 1.09001 * 109.56279 * 185.55013 * 16 15 6 18 18 N 1.46496 * 109.35969 * 65.49964 * 16 15 6 19 19 C 1.34776 * 120.00146 * 85.16021 * 18 16 15 20 20 O 1.21688 * 120.00105 * 359.97438 * 19 18 16 21 21 C 1.46731 * 120.00235 * 180.02562 * 19 18 16 22 22 C 1.34880 * 125.06024 * 179.72207 * 21 19 18 23 23 C 1.38927 * 113.65781 * 179.79993 * 22 21 19 24 24 C 1.47333 * 122.96562 * 180.21579 * 23 22 21 25 25 N 1.34780 * 120.00192 * 180.26145 * 24 23 22 26 26 O 1.21622 * 120.00077 * 0.26659 * 24 23 22 27 27 C 1.36666 * 114.07572 * 0.47965 * 23 22 21 28 28 S 1.70594 * 110.52862 * 359.73888 * 27 23 22 29 29 H 1.09006 * 109.47344 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47019 * 299.97281 * 1 2 3 31 31 H 1.09000 * 109.47232 * 59.97154 * 1 2 3 32 32 H 1.08999 * 109.49065 * 58.66621 * 4 2 1 33 33 H 1.08999 * 109.49897 * 298.57294 * 4 2 1 34 34 H 1.08999 * 109.58657 * 294.85036 * 5 4 2 35 35 H 1.09002 * 109.57750 * 174.42668 * 5 4 2 36 36 H 0.97004 * 119.99980 * 180.02562 * 10 9 7 37 37 H 1.09002 * 109.58632 * 173.14678 * 15 6 5 38 38 H 1.09001 * 109.58984 * 293.57715 * 15 6 5 39 39 H 0.96997 * 120.00477 * 265.15486 * 18 16 15 40 40 H 1.08003 * 123.16882 * 359.97438 * 22 21 19 41 41 H 0.96994 * 120.00345 * 0.02562 * 25 24 23 42 42 H 0.97003 * 119.99787 * 179.97438 * 25 24 23 43 43 H 1.07998 * 124.73206 * 179.76940 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7210 -1.2500 5 6 3.5713 -0.6888 -1.2642 6 7 4.0678 -1.2490 0.0001 7 6 4.9756 -2.2741 0.0002 8 1 5.0133 -2.9622 -0.8314 9 6 5.8437 -2.4324 1.0718 10 7 6.4151 -3.5980 1.2892 11 14 6.2008 -0.9913 2.2052 12 1 5.2685 -1.0273 3.3605 13 1 7.5999 -1.0816 2.6951 14 1 6.0181 0.2809 1.4612 15 6 3.5672 -0.6923 1.2643 16 6 2.0398 -0.7207 1.2501 17 1 1.6572 -0.2206 2.1399 18 7 1.5801 -2.1116 1.2345 19 6 1.4515 -2.7919 2.3908 20 8 1.7177 -2.2510 3.4478 21 6 0.9915 -4.1852 2.3750 22 6 0.8319 -4.9608 3.4669 23 6 0.3801 -6.2426 3.1790 24 6 0.1314 -7.2572 4.2179 25 7 -0.3019 -8.4853 3.8706 26 8 0.3171 -6.9866 5.3891 27 6 0.1921 -6.4813 1.8465 28 16 0.5738 -5.0937 0.9305 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5134 0.8903 31 1 -0.3634 0.5143 -0.8897 32 1 1.6572 -0.2209 -2.1398 33 1 1.6977 -1.7558 -1.2382 34 1 3.9142 0.3407 -1.3674 35 1 3.9415 -1.2848 -2.0983 36 1 7.0214 -3.7087 2.0382 37 1 3.9347 -1.2907 2.0980 38 1 3.9097 0.3369 1.3715 39 1 1.3682 -2.5429 0.3919 40 1 1.0335 -4.6168 4.4707 41 1 -0.4497 -8.7013 2.9367 42 1 -0.4653 -9.1534 4.5547 43 1 -0.1507 -7.4176 1.4315 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968682825.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:17 Heat of formation + Delta-G solvation = -18.115804 kcal Electronic energy + Delta-G solvation = -27693.278660 eV Core-core repulsion = 23865.647663 eV Total energy + Delta-G solvation = -3827.630996 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.10705 -39.69082 -37.97094 -36.64009 -34.32422 -33.90784 -32.98929 -31.37922 -30.47733 -29.24822 -27.59832 -25.61620 -24.04376 -23.62178 -22.37556 -21.26583 -20.55081 -19.24506 -18.95077 -18.72779 -17.22511 -17.09255 -16.79941 -15.67267 -15.39959 -15.35110 -14.97817 -14.66091 -14.43878 -14.14215 -13.69171 -13.64375 -13.49492 -13.37130 -13.15847 -12.77953 -12.69844 -12.55733 -12.18256 -12.01920 -11.68597 -11.50229 -11.32120 -11.15956 -10.64113 -10.55387 -10.28058 -10.19356 -9.95942 -9.90860 -9.85063 -9.64381 -9.41637 -9.03066 -8.77538 -8.68751 -8.43090 -6.95805 -5.93318 -3.29118 0.34080 1.31951 1.67582 1.72004 3.17313 3.26401 3.43626 3.49631 3.53185 3.55175 3.65015 4.58017 4.62389 4.85266 4.91552 4.94342 5.06750 5.08408 5.13700 5.17300 5.43956 5.69247 5.69492 5.71427 5.80723 5.93861 5.97866 6.04395 6.09986 6.16684 6.18239 6.28783 6.33923 6.47151 6.57009 6.57605 6.67625 6.78030 6.93618 7.11163 7.83489 7.96545 8.08879 8.32972 8.53714 8.93967 9.74245 10.10340 11.22151 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.011902 B = 0.004402 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.069695 B = 6359.678256 C = 7419.329127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.081 0.919 4 C -0.131 4.131 5 C 0.146 3.854 6 N -0.601 5.601 7 C -0.263 4.263 8 H 0.084 0.916 9 C 0.030 3.970 10 N -0.905 5.905 11 Si 0.874 3.126 12 H -0.283 1.283 13 H -0.303 1.303 14 H -0.271 1.271 15 C 0.112 3.888 16 C 0.135 3.865 17 H 0.084 0.916 18 N -0.694 5.694 19 C 0.590 3.410 20 O -0.531 6.531 21 C -0.250 4.250 22 C -0.021 4.021 23 C -0.162 4.162 24 C 0.585 3.415 25 N -0.852 5.852 26 O -0.535 6.535 27 C -0.213 4.213 28 S 0.259 5.741 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.024 0.976 35 H 0.064 0.936 36 H 0.262 0.738 37 H 0.082 0.918 38 H 0.034 0.966 39 H 0.395 0.605 40 H 0.163 0.837 41 H 0.399 0.601 42 H 0.405 0.595 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.835 -4.121 -5.205 19.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.100 0.900 4 C -0.171 4.171 5 C 0.020 3.980 6 N -0.325 5.325 7 C -0.391 4.391 8 H 0.102 0.898 9 C -0.170 4.170 10 N -0.547 5.547 11 Si 0.704 3.296 12 H -0.211 1.211 13 H -0.232 1.232 14 H -0.196 1.196 15 C -0.015 4.015 16 C 0.029 3.971 17 H 0.102 0.898 18 N -0.345 5.345 19 C 0.375 3.625 20 O -0.409 6.409 21 C -0.370 4.370 22 C -0.052 4.052 23 C -0.181 4.181 24 C 0.369 3.631 25 N -0.416 5.416 26 O -0.412 6.412 27 C -0.353 4.353 28 S 0.527 5.473 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.051 0.949 39 H 0.231 0.769 40 H 0.180 0.820 41 H 0.228 0.772 42 H 0.236 0.764 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -17.328 -3.107 -5.256 18.373 hybrid contribution 0.205 -0.481 1.604 1.687 sum -17.123 -3.588 -3.652 17.872 Atomic orbital electron populations 1.21846 0.95439 1.01612 1.01325 1.21330 0.95155 0.99908 0.95007 0.90028 1.22099 0.98965 0.99738 0.96276 1.20957 0.90810 0.96753 0.89522 1.44291 1.48675 1.40488 0.99051 1.18803 1.10159 1.02898 1.07193 0.89807 1.25213 0.97308 0.96465 0.97980 1.69820 1.32777 1.21767 1.30346 0.87066 0.76473 0.84793 0.81252 1.21053 1.23167 1.19581 1.21719 0.91104 0.97711 0.90967 1.21497 0.96906 0.80677 0.98004 0.89789 1.45652 1.67047 1.13999 1.07754 1.16826 0.77576 0.83594 0.84525 1.90820 1.50736 1.68668 1.30695 1.24291 1.15137 1.00159 0.97452 1.20283 0.93888 0.90471 1.00530 1.18969 1.10293 0.96192 0.92639 1.17636 0.75879 0.81848 0.87752 1.43651 1.71207 1.14194 1.12508 1.90857 1.51498 1.79853 1.19021 1.26034 1.06323 1.05333 0.97591 1.83019 1.56618 1.00159 1.07464 0.92917 0.92865 0.92758 0.92104 0.92457 0.95838 0.91777 0.92799 0.90014 0.94872 0.76940 0.81988 0.77204 0.76406 0.80848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.05 37.16 0.34 -1.29 16 2 C -0.09 -1.31 2.48 -90.58 -0.22 -1.54 16 3 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.13 -1.83 5.20 -26.61 -0.14 -1.97 16 5 C 0.15 2.61 6.52 -3.71 -0.02 2.58 16 6 N -0.60 -13.59 2.70 -172.58 -0.47 -14.05 16 7 C -0.26 -7.12 10.03 -15.06 -0.15 -7.27 16 8 H 0.08 2.40 8.06 -52.48 -0.42 1.98 16 9 C 0.03 0.87 5.23 -17.43 -0.09 0.78 16 10 N -0.90 -27.96 13.97 55.49 0.78 -27.18 16 11 Si 0.87 23.23 24.35 -169.99 -4.14 19.09 16 12 H -0.28 -7.69 6.62 56.52 0.37 -7.31 16 13 H -0.30 -8.20 7.11 56.52 0.40 -7.80 16 14 H -0.27 -6.93 6.64 56.52 0.38 -6.55 16 15 C 0.11 2.46 3.76 -3.93 -0.01 2.44 16 16 C 0.14 2.39 2.24 -68.03 -0.15 2.23 16 17 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 18 N -0.69 -12.02 4.24 -55.19 -0.23 -12.26 16 19 C 0.59 11.39 7.75 -12.83 -0.10 11.29 16 20 O -0.53 -12.14 16.45 5.20 0.09 -12.05 16 21 C -0.25 -4.09 6.37 -37.34 -0.24 -4.33 16 22 C -0.02 -0.34 9.47 -40.52 -0.38 -0.73 16 23 C -0.16 -2.15 5.82 -106.51 -0.62 -2.77 16 24 C 0.58 7.70 8.06 -12.56 -0.10 7.60 16 25 N -0.85 -6.66 8.84 30.41 0.27 -6.39 16 26 O -0.54 -9.38 17.53 5.26 0.09 -9.28 16 27 C -0.21 -2.13 10.41 30.16 0.31 -1.81 16 28 S 0.26 3.00 22.09 -107.50 -2.37 0.62 16 29 H 0.05 0.58 7.55 -51.93 -0.39 0.19 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.80 6.40 -51.93 -0.33 0.47 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 36 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 37 H 0.08 2.13 4.49 -51.93 -0.23 1.89 16 38 H 0.03 0.73 7.08 -51.93 -0.37 0.36 16 39 H 0.40 6.07 5.72 -40.82 -0.23 5.84 16 40 H 0.16 2.90 7.95 -52.48 -0.42 2.48 16 41 H 0.40 1.83 7.29 -40.82 -0.30 1.53 16 42 H 0.40 2.58 8.93 -40.82 -0.36 2.22 16 43 H 0.17 0.95 6.98 -52.49 -0.37 0.59 16 LS Contribution 357.90 15.07 5.39 5.39 Total: -1.00 -36.75 357.90 -7.72 -44.47 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -5.54 Total: 6.44 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -1.59 Total: 5.22 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 0.34 Total: -59.89 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: 0.18 Total: -21.33 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -4.14 Total: 19.09 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -2.37 Total: 0.62 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.75 -7.72 -44.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968682825.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.355 kcal (2) G-P(sol) polarization free energy of solvation -36.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds