Wall clock time and date at job start Tue Mar 31 2020 20:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.45902 * 2 1 4 4 C 1.53037 * 109.46230 * 240.04226 * 2 1 3 5 5 C 1.53185 * 109.31565 * 178.61191 * 4 2 1 6 6 N 1.46920 * 108.77550 * 54.63640 * 5 4 2 7 7 C 1.36936 * 120.63514 * 126.38961 * 6 5 4 8 8 H 1.07997 * 120.00754 * 207.67814 * 7 6 5 9 9 C 1.38814 * 119.99904 * 27.67637 * 7 6 5 10 10 N 1.31627 * 119.99940 * 17.37116 * 9 7 6 11 11 Si 1.86800 * 120.00451 * 197.37182 * 9 7 6 12 12 H 1.48507 * 109.46919 * 0.02562 * 11 9 7 13 13 H 1.48491 * 109.47157 * 119.99751 * 11 9 7 14 14 H 1.48493 * 109.47357 * 240.00173 * 11 9 7 15 15 C 1.46933 * 118.76628 * 306.41268 * 6 5 4 16 16 C 1.53036 * 109.46086 * 119.97502 * 2 1 3 17 17 H 1.08994 * 109.49890 * 61.40260 * 16 2 1 18 18 N 1.46504 * 109.49825 * 301.33426 * 16 2 1 19 19 C 1.34779 * 120.00014 * 155.06491 * 18 16 2 20 20 O 1.21680 * 119.99993 * 0.02562 * 19 18 16 21 21 C 1.46732 * 119.99880 * 180.02562 * 19 18 16 22 22 C 1.34876 * 125.05683 * 180.02562 * 21 19 18 23 23 C 1.38934 * 113.65757 * 179.97438 * 22 21 19 24 24 C 1.47329 * 122.96171 * 180.02562 * 23 22 21 25 25 N 1.34781 * 119.99812 * 180.02562 * 24 23 22 26 26 O 1.21613 * 120.00336 * 359.97438 * 24 23 22 27 27 C 1.36663 * 114.07437 * 359.97438 * 23 22 21 28 28 S 1.70592 * 110.53125 * 0.02562 * 27 23 22 29 29 H 1.09004 * 109.46965 * 300.02539 * 1 2 3 30 30 H 1.08994 * 109.46995 * 60.02577 * 1 2 3 31 31 H 1.09000 * 109.46998 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.49777 * 298.57141 * 4 2 1 33 33 H 1.09000 * 109.49688 * 58.65924 * 4 2 1 34 34 H 1.09004 * 109.58923 * 174.42249 * 5 4 2 35 35 H 1.08995 * 109.58994 * 294.70666 * 5 4 2 36 36 H 0.96993 * 120.00034 * 180.02562 * 10 9 7 37 37 H 1.09007 * 109.55963 * 293.78759 * 15 6 5 38 38 H 1.09000 * 109.61940 * 173.35576 * 15 6 5 39 39 H 0.97005 * 120.00030 * 335.07004 * 18 16 2 40 40 H 1.08001 * 123.17048 * 359.96589 * 22 21 19 41 41 H 0.96994 * 120.00023 * 359.97438 * 25 24 23 42 42 H 0.96999 * 119.99996 * 180.02562 * 25 24 23 43 43 H 1.07999 * 124.73044 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7205 -1.2501 5 6 3.5714 -0.6883 -1.2644 6 7 4.0679 -1.2487 -0.0003 7 6 4.9761 -2.2736 -0.0003 8 1 5.0092 -2.9660 0.8278 9 6 5.8543 -2.4226 -1.0650 10 7 6.0605 -1.4206 -1.8933 11 14 6.7437 -4.0450 -1.3223 12 1 6.3408 -5.0038 -0.2621 13 1 6.3863 -4.5999 -2.6525 14 1 8.2102 -3.8215 -1.2569 15 6 3.5715 -0.6894 1.2645 16 6 2.0399 -0.7209 1.2499 17 1 1.6974 -1.7556 1.2383 18 7 1.5257 -0.0490 2.4459 19 6 1.3984 -0.7324 3.6006 20 8 1.7111 -1.9073 3.6499 21 6 0.8829 -0.0595 4.7984 22 6 0.7148 -0.6428 6.0028 23 6 0.2109 0.2153 6.9723 24 6 -0.0512 -0.2076 8.3591 25 7 -0.5414 0.6753 9.2516 26 8 0.1740 -1.3536 8.6982 27 6 -0.0193 1.4865 6.5265 28 16 0.3938 1.6260 4.8772 29 1 -0.3633 0.5142 0.8898 30 1 -0.3633 0.5134 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 1.6978 -1.7554 -1.2386 33 1 1.6572 -0.2204 -2.1398 34 1 3.9417 -1.2841 -2.0986 35 1 3.9143 0.3409 -1.3698 36 1 6.6738 -1.5248 -2.6374 37 1 3.9148 0.3400 1.3680 38 1 3.9413 -1.2858 2.0986 39 1 1.2767 0.8877 2.4068 40 1 0.9496 -1.6793 6.1953 41 1 -0.7214 1.5892 8.9811 42 1 -0.7136 0.3970 10.1648 43 1 -0.4083 2.2904 7.1337 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968682826.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:19 Heat of formation + Delta-G solvation = -25.820401 kcal Electronic energy + Delta-G solvation = -26587.257644 eV Core-core repulsion = 22759.292551 eV Total energy + Delta-G solvation = -3827.965093 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.30832 -39.71562 -37.88639 -36.88927 -34.51983 -34.13468 -33.07688 -31.12588 -30.45745 -28.81807 -27.32767 -25.86643 -24.25625 -23.58403 -21.88981 -21.06123 -20.50145 -19.72718 -19.30910 -18.70623 -17.43285 -17.25949 -16.80159 -15.75515 -15.72681 -15.30554 -14.92718 -14.71540 -14.57126 -13.89051 -13.78438 -13.54952 -13.51440 -13.37513 -13.21915 -12.99443 -12.84790 -12.47476 -12.03980 -11.67942 -11.60377 -11.52036 -11.04647 -10.79835 -10.67933 -10.43563 -10.27338 -10.15109 -10.12222 -10.07001 -9.87151 -9.66365 -9.57078 -9.33011 -9.03206 -8.85399 -8.39762 -6.67001 -5.77173 -3.19001 0.02802 0.99468 1.36776 1.42081 2.92291 3.02705 3.26401 3.30579 3.40933 3.48969 3.53596 4.34177 4.53346 4.60743 4.76369 4.82462 5.08796 5.26098 5.37119 5.39817 5.45984 5.58899 5.69358 5.87718 5.89704 5.93771 6.03130 6.14479 6.20085 6.27024 6.35795 6.51433 6.60707 6.63791 6.71478 6.81851 6.88805 6.97023 7.35293 7.59695 7.65268 7.85683 7.86362 8.27397 8.47264 9.23618 9.85639 10.40817 11.31612 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.017237 B = 0.002723 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.010993 B =10278.945271 C =11367.947084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.067 0.933 4 C -0.133 4.133 5 C 0.166 3.834 6 N -0.587 5.587 7 C -0.249 4.249 8 H 0.068 0.932 9 C 0.002 3.998 10 N -0.904 5.904 11 Si 0.902 3.098 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.291 1.291 15 C 0.141 3.859 16 C 0.133 3.867 17 H 0.090 0.910 18 N -0.714 5.714 19 C 0.584 3.416 20 O -0.516 6.516 21 C -0.256 4.256 22 C -0.019 4.019 23 C -0.161 4.161 24 C 0.583 3.417 25 N -0.851 5.851 26 O -0.532 6.532 27 C -0.209 4.209 28 S 0.248 5.752 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.019 0.981 36 H 0.253 0.747 37 H 0.018 0.982 38 H 0.059 0.941 39 H 0.390 0.610 40 H 0.165 0.835 41 H 0.399 0.601 42 H 0.406 0.594 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.215 13.409 14.848 26.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.086 0.914 4 C -0.173 4.173 5 C 0.041 3.959 6 N -0.309 5.309 7 C -0.378 4.378 8 H 0.085 0.915 9 C -0.196 4.196 10 N -0.549 5.549 11 Si 0.732 3.268 12 H -0.201 1.201 13 H -0.216 1.216 14 H -0.218 1.218 15 C 0.013 3.987 16 C 0.028 3.972 17 H 0.108 0.892 18 N -0.365 5.365 19 C 0.368 3.632 20 O -0.392 6.392 21 C -0.376 4.376 22 C -0.049 4.049 23 C -0.179 4.179 24 C 0.367 3.633 25 N -0.415 5.415 26 O -0.409 6.409 27 C -0.349 4.349 28 S 0.516 5.484 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.037 0.963 36 H 0.063 0.937 37 H 0.036 0.964 38 H 0.078 0.922 39 H 0.224 0.776 40 H 0.183 0.817 41 H 0.228 0.772 42 H 0.238 0.762 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -16.677 12.948 13.681 25.159 hybrid contribution 0.173 -0.866 1.240 1.523 sum -16.503 12.082 14.921 25.318 Atomic orbital electron populations 1.21865 0.95961 1.01694 1.00712 1.21316 0.94596 0.99694 0.95438 0.91422 1.22248 1.00679 0.99605 0.94759 1.20850 0.87301 0.97366 0.90398 1.44000 1.48065 1.39812 0.99059 1.19275 1.09623 1.02761 1.06185 0.91458 1.25018 0.97231 0.97540 0.99860 1.70049 1.37865 1.28978 1.17990 0.86219 0.79064 0.83741 0.77807 1.20115 1.21550 1.21755 1.21201 0.89889 0.96755 0.90835 1.21860 0.96893 0.97040 0.81408 0.89202 1.46013 1.66110 1.13812 1.10525 1.16900 0.78330 0.86301 0.81691 1.90891 1.49332 1.15129 1.83891 1.24396 1.14995 0.98561 0.99691 1.20358 0.93571 1.01801 0.89210 1.19037 1.09466 0.93618 0.95813 1.17621 0.76299 0.84911 0.84503 1.43662 1.69007 1.14488 1.14358 1.90877 1.51602 1.18739 1.79675 1.26055 1.06043 1.00753 1.02027 1.83031 1.55556 1.06835 1.03019 0.93515 0.92836 0.92802 0.92335 0.92634 0.89180 0.96296 0.93735 0.96433 0.92215 0.77596 0.81726 0.77208 0.76248 0.80728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.02 37.16 0.34 -1.48 16 2 C -0.09 -1.42 2.27 -90.58 -0.21 -1.62 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.13 -2.42 5.36 -26.62 -0.14 -2.56 16 5 C 0.17 3.87 5.31 -3.72 -0.02 3.86 16 6 N -0.59 -14.81 3.00 -172.32 -0.52 -15.33 16 7 C -0.25 -7.01 9.58 -15.06 -0.14 -7.15 16 8 H 0.07 1.92 7.89 -52.49 -0.41 1.51 16 9 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 10 N -0.90 -26.24 11.19 55.49 0.62 -25.62 16 11 Si 0.90 22.19 29.59 -169.99 -5.03 17.16 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 15 C 0.14 3.05 6.09 -3.70 -0.02 3.03 16 16 C 0.13 2.34 2.06 -67.81 -0.14 2.20 16 17 H 0.09 1.83 7.58 -51.93 -0.39 1.43 16 18 N -0.71 -10.18 4.36 -54.98 -0.24 -10.42 16 19 C 0.58 9.17 7.75 -12.83 -0.10 9.07 16 20 O -0.52 -10.44 16.45 5.21 0.09 -10.35 16 21 C -0.26 -3.11 6.37 -37.35 -0.24 -3.35 16 22 C -0.02 -0.23 9.47 -40.52 -0.38 -0.62 16 23 C -0.16 -1.57 5.82 -106.51 -0.62 -2.19 16 24 C 0.58 5.95 8.06 -12.56 -0.10 5.85 16 25 N -0.85 -4.40 8.84 30.41 0.27 -4.13 16 26 O -0.53 -7.90 17.52 5.27 0.09 -7.81 16 27 C -0.21 -1.31 10.41 30.16 0.31 -1.00 16 28 S 0.25 1.80 22.09 -107.50 -2.37 -0.57 16 29 H 0.05 0.50 7.36 -51.93 -0.38 0.12 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 2.36 6.04 -51.93 -0.31 2.05 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 1.40 7.93 -51.93 -0.41 0.99 16 39 H 0.39 4.33 7.38 -40.82 -0.30 4.03 16 40 H 0.17 2.37 7.95 -52.49 -0.42 1.95 16 41 H 0.40 0.74 7.29 -40.82 -0.30 0.45 16 42 H 0.41 1.64 8.93 -40.82 -0.36 1.27 16 43 H 0.18 0.37 6.99 -52.49 -0.37 0.00 16 LS Contribution 367.49 15.07 5.54 5.54 Total: -1.00 -35.72 367.49 -8.86 -44.58 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.76 Total: 2.95 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -1.55 Total: 4.00 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 0.13 Total: -55.50 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.18 Total: -18.16 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.37 Total: -0.57 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.72 -8.86 -44.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968682826.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.763 kcal (2) G-P(sol) polarization free energy of solvation -35.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds