Wall clock time and date at job start Tue Mar 31 2020 20:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.45902 * 2 1 4 4 C 1.53037 * 109.46230 * 240.04226 * 2 1 3 5 5 C 1.53185 * 109.31565 * 178.61191 * 4 2 1 6 6 N 1.46920 * 108.77550 * 54.63640 * 5 4 2 7 7 C 1.36936 * 120.63514 * 126.38961 * 6 5 4 8 8 H 1.07997 * 120.00754 * 207.67814 * 7 6 5 9 9 C 1.38814 * 119.99904 * 27.67637 * 7 6 5 10 10 N 1.31627 * 119.99940 * 17.37116 * 9 7 6 11 11 Si 1.86800 * 120.00451 * 197.37182 * 9 7 6 12 12 H 1.48507 * 109.46919 * 0.02562 * 11 9 7 13 13 H 1.48491 * 109.47157 * 119.99751 * 11 9 7 14 14 H 1.48493 * 109.47357 * 240.00173 * 11 9 7 15 15 C 1.46933 * 118.76628 * 306.41268 * 6 5 4 16 16 C 1.53036 * 109.46086 * 119.97502 * 2 1 3 17 17 H 1.08994 * 109.49890 * 61.40260 * 16 2 1 18 18 N 1.46504 * 109.49825 * 301.33426 * 16 2 1 19 19 C 1.34779 * 120.00014 * 155.06491 * 18 16 2 20 20 O 1.21680 * 119.99993 * 0.02562 * 19 18 16 21 21 C 1.46732 * 119.99880 * 180.02562 * 19 18 16 22 22 C 1.34876 * 125.05683 * 180.02562 * 21 19 18 23 23 C 1.38934 * 113.65757 * 179.97438 * 22 21 19 24 24 C 1.47329 * 122.96171 * 180.02562 * 23 22 21 25 25 N 1.34781 * 119.99812 * 180.02562 * 24 23 22 26 26 O 1.21613 * 120.00336 * 359.97438 * 24 23 22 27 27 C 1.36663 * 114.07437 * 359.97438 * 23 22 21 28 28 S 1.70592 * 110.53125 * 0.02562 * 27 23 22 29 29 H 1.09004 * 109.46965 * 300.02539 * 1 2 3 30 30 H 1.08994 * 109.46995 * 60.02577 * 1 2 3 31 31 H 1.09000 * 109.46998 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.49777 * 298.57141 * 4 2 1 33 33 H 1.09000 * 109.49688 * 58.65924 * 4 2 1 34 34 H 1.09004 * 109.58923 * 174.42249 * 5 4 2 35 35 H 1.08995 * 109.58994 * 294.70666 * 5 4 2 36 36 H 0.96993 * 120.00034 * 180.02562 * 10 9 7 37 37 H 1.09007 * 109.55963 * 293.78759 * 15 6 5 38 38 H 1.09000 * 109.61940 * 173.35576 * 15 6 5 39 39 H 0.97005 * 120.00030 * 335.07004 * 18 16 2 40 40 H 1.08001 * 123.17048 * 359.96589 * 22 21 19 41 41 H 0.96994 * 120.00023 * 359.97438 * 25 24 23 42 42 H 0.96999 * 119.99996 * 180.02562 * 25 24 23 43 43 H 1.07999 * 124.73044 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7205 -1.2501 5 6 3.5714 -0.6883 -1.2644 6 7 4.0679 -1.2487 -0.0003 7 6 4.9761 -2.2736 -0.0003 8 1 5.0092 -2.9660 0.8278 9 6 5.8543 -2.4226 -1.0650 10 7 6.0605 -1.4206 -1.8933 11 14 6.7437 -4.0450 -1.3223 12 1 6.3408 -5.0038 -0.2621 13 1 6.3863 -4.5999 -2.6525 14 1 8.2102 -3.8215 -1.2569 15 6 3.5715 -0.6894 1.2645 16 6 2.0399 -0.7209 1.2499 17 1 1.6974 -1.7556 1.2383 18 7 1.5257 -0.0490 2.4459 19 6 1.3984 -0.7324 3.6006 20 8 1.7111 -1.9073 3.6499 21 6 0.8829 -0.0595 4.7984 22 6 0.7148 -0.6428 6.0028 23 6 0.2109 0.2153 6.9723 24 6 -0.0512 -0.2076 8.3591 25 7 -0.5414 0.6753 9.2516 26 8 0.1740 -1.3536 8.6982 27 6 -0.0193 1.4865 6.5265 28 16 0.3938 1.6260 4.8772 29 1 -0.3633 0.5142 0.8898 30 1 -0.3633 0.5134 -0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 1.6978 -1.7554 -1.2386 33 1 1.6572 -0.2204 -2.1398 34 1 3.9417 -1.2841 -2.0986 35 1 3.9143 0.3409 -1.3698 36 1 6.6738 -1.5248 -2.6374 37 1 3.9148 0.3400 1.3680 38 1 3.9413 -1.2858 2.0986 39 1 1.2767 0.8877 2.4068 40 1 0.9496 -1.6793 6.1953 41 1 -0.7214 1.5892 8.9811 42 1 -0.7136 0.3970 10.1648 43 1 -0.4083 2.2904 7.1337 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968682826.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:19 Heat of formation + Delta-G solvation = -54.204261 kcal Electronic energy + Delta-G solvation = -26588.488460 eV Core-core repulsion = 22759.292551 eV Total energy + Delta-G solvation = -3829.195909 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.33359 -40.79337 -39.30833 -37.85859 -36.23105 -34.82100 -34.56887 -33.04806 -31.55346 -30.17540 -28.93122 -26.66995 -25.95236 -24.87349 -23.22793 -22.68490 -21.67814 -21.05812 -20.15130 -19.72448 -18.74360 -18.13505 -18.03077 -17.23723 -16.77598 -16.57133 -16.34664 -15.88801 -15.74620 -15.46211 -15.27207 -15.06720 -14.83053 -14.56383 -14.23788 -14.09288 -13.79899 -13.78051 -13.56023 -13.21688 -13.14919 -12.77035 -12.66933 -12.39185 -12.31065 -12.03740 -11.96511 -11.69188 -11.51498 -11.29269 -11.26660 -11.08593 -10.75818 -10.62683 -10.31040 -10.03334 -9.65679 -8.71356 -7.92532 -5.37371 -0.70985 0.28288 0.53595 0.64427 1.41788 1.43756 1.55382 1.90157 1.97077 2.32598 2.48235 2.57850 3.21469 3.58397 3.71589 3.78990 3.93754 3.99829 4.04318 4.09311 4.10299 4.42841 4.49141 4.59431 4.65445 4.76365 4.89421 4.93707 4.95452 4.97245 5.03930 5.08979 5.16296 5.21357 5.40402 5.46038 5.53202 5.62184 5.77267 5.85271 6.35070 6.40722 6.42391 7.08802 7.12430 7.28494 7.80695 8.30047 9.13188 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.017237 B = 0.002723 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.010993 B =10278.945271 C =11367.947084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.083 4.083 3 H 0.086 0.914 4 C -0.123 4.123 5 C 0.171 3.829 6 N -0.606 5.606 7 C -0.267 4.267 8 H 0.050 0.950 9 C -0.042 4.042 10 N -0.927 5.927 11 Si 0.963 3.037 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.287 1.287 15 C 0.143 3.857 16 C 0.150 3.850 17 H 0.057 0.943 18 N -0.698 5.698 19 C 0.582 3.418 20 O -0.577 6.577 21 C -0.301 4.301 22 C -0.028 4.028 23 C -0.191 4.191 24 C 0.580 3.420 25 N -0.822 5.822 26 O -0.595 6.595 27 C -0.169 4.169 28 S 0.344 5.656 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.008 0.992 36 H 0.253 0.747 37 H 0.025 0.975 38 H 0.027 0.973 39 H 0.411 0.589 40 H 0.125 0.875 41 H 0.419 0.581 42 H 0.415 0.585 43 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.820 17.468 15.470 30.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.102 4.102 3 H 0.104 0.896 4 C -0.162 4.162 5 C 0.046 3.954 6 N -0.330 5.330 7 C -0.397 4.397 8 H 0.068 0.932 9 C -0.238 4.238 10 N -0.572 5.572 11 Si 0.791 3.209 12 H -0.202 1.202 13 H -0.208 1.208 14 H -0.214 1.214 15 C 0.016 3.984 16 C 0.043 3.957 17 H 0.076 0.924 18 N -0.350 5.350 19 C 0.369 3.631 20 O -0.457 6.457 21 C -0.421 4.421 22 C -0.061 4.061 23 C -0.208 4.208 24 C 0.364 3.636 25 N -0.387 5.387 26 O -0.477 6.477 27 C -0.309 4.309 28 S 0.612 5.388 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.026 0.974 36 H 0.062 0.938 37 H 0.043 0.957 38 H 0.046 0.954 39 H 0.248 0.752 40 H 0.143 0.857 41 H 0.252 0.748 42 H 0.247 0.753 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -19.339 17.118 14.329 29.535 hybrid contribution 0.975 -1.974 1.126 2.473 sum -18.364 15.144 15.455 28.380 Atomic orbital electron populations 1.21798 0.92753 1.01779 1.03082 1.21257 0.97096 0.99527 0.92302 0.89600 1.22083 0.96619 0.99827 0.97694 1.20737 0.90724 0.95581 0.88375 1.44210 1.48190 1.39741 1.00840 1.19392 1.10592 1.03654 1.06094 0.93234 1.25678 0.98084 1.00426 0.99622 1.70162 1.38427 1.30386 1.18267 0.85279 0.77867 0.80083 0.77658 1.20180 1.20843 1.21372 1.21229 0.92783 0.95967 0.88426 1.21346 0.93833 0.96445 0.84045 0.92439 1.45695 1.65481 1.14575 1.09210 1.17433 0.77166 0.85735 0.82760 1.90855 1.51911 1.18015 1.84967 1.24032 1.17736 1.02523 0.97764 1.20263 0.94218 1.00916 0.90673 1.18819 1.12004 0.94697 0.95266 1.17788 0.75978 0.84586 0.85211 1.43415 1.66658 1.14690 1.13943 1.90850 1.54686 1.21456 1.80674 1.26697 1.01720 1.00222 1.02296 1.82680 1.52735 1.00902 1.02495 0.91158 0.90449 0.93937 0.93686 0.89537 0.92666 0.97377 0.93795 0.95681 0.95432 0.75178 0.85684 0.74796 0.75299 0.75305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.02 71.98 0.65 -2.30 16 2 C -0.08 -2.41 2.27 -10.77 -0.02 -2.43 16 3 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 4 C -0.12 -4.37 5.36 30.67 0.16 -4.20 16 5 C 0.17 8.15 5.31 86.36 0.46 8.61 16 6 N -0.61 -31.98 3.00 -699.09 -2.09 -34.08 16 7 C -0.27 -15.81 9.58 84.03 0.81 -15.00 16 8 H 0.05 3.03 7.89 -2.91 -0.02 3.01 16 9 C -0.04 -2.45 4.91 84.86 0.42 -2.03 16 10 N -0.93 -55.30 11.19 21.65 0.24 -55.06 16 11 Si 0.96 47.09 29.59 68.60 2.03 49.12 16 12 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 13 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 14 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 15 C 0.14 6.46 6.09 86.36 0.53 6.99 16 16 C 0.15 5.34 2.06 45.07 0.09 5.44 16 17 H 0.06 2.47 7.58 -2.39 -0.02 2.45 16 18 N -0.70 -19.46 4.36 -446.08 -1.95 -21.41 16 19 C 0.58 18.96 7.75 86.46 0.67 19.63 16 20 O -0.58 -25.47 16.45 -4.28 -0.07 -25.54 16 21 C -0.30 -7.20 6.37 23.72 0.15 -7.05 16 22 C -0.03 -0.74 9.47 21.66 0.21 -0.54 16 23 C -0.19 -3.42 5.82 -21.09 -0.12 -3.54 16 24 C 0.58 11.38 8.06 86.63 0.70 12.07 16 25 N -0.82 -6.10 8.84 -175.95 -1.56 -7.66 16 26 O -0.59 -18.62 17.52 -4.07 -0.07 -18.69 16 27 C -0.17 -1.28 10.41 67.45 0.70 -0.58 16 28 S 0.34 3.46 22.09 -56.49 -1.25 2.21 16 29 H 0.07 1.20 7.36 -2.38 -0.02 1.18 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.05 3.00 6.04 -2.39 -0.01 2.99 16 35 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 37 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.03 1.38 7.93 -2.39 -0.02 1.36 16 39 H 0.41 7.90 7.38 -92.70 -0.68 7.22 16 40 H 0.13 4.17 7.95 -2.91 -0.02 4.15 16 41 H 0.42 -0.52 7.29 -92.71 -0.68 -1.19 16 42 H 0.41 2.34 8.93 -92.71 -0.83 1.51 16 43 H 0.23 -0.86 6.99 -2.91 -0.02 -0.88 16 Total: -1.00 -88.39 367.49 -0.43 -88.82 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -1.11 Total: 7.22 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 5.39 Total: 15.06 kcal Atomic # 7 Polarization: -112.85 SS G_CDS: -5.35 Total: -118.20 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -0.14 Total: -44.24 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -1.25 Total: 2.21 kcal Total: -88.39 -0.43 -88.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968682826.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.613 kcal (2) G-P(sol) polarization free energy of solvation -88.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds