Wall clock time and date at job start Tue Mar 31 2020 20:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.70332 * 2 1 4 4 C 1.53194 * 109.58774 * 120.35794 * 2 1 3 5 5 H 1.08999 * 109.49688 * 294.40561 * 4 2 1 6 6 N 1.46495 * 109.49711 * 54.46691 * 4 2 1 7 7 C 1.34775 * 120.00302 * 205.00076 * 6 4 2 8 8 O 1.21622 * 119.99756 * 359.97438 * 7 6 4 9 9 C 1.47171 * 120.00224 * 180.02562 * 7 6 4 10 10 C 1.36614 * 125.16140 * 180.02562 * 9 7 6 11 11 C 1.36787 * 114.74649 * 179.97438 * 10 9 7 12 12 C 1.36619 * 114.74554 * 359.97438 * 11 10 9 13 13 C 1.47174 * 125.16239 * 180.02562 * 12 11 10 14 14 N 1.34773 * 119.99693 * 180.02562 * 13 12 11 15 15 O 1.21622 * 120.00042 * 0.02562 * 13 12 11 16 16 S 1.75837 * 125.16022 * 359.69453 * 9 7 6 17 17 C 1.53104 * 109.33196 * 174.42006 * 4 2 1 18 18 C 1.53038 * 109.50329 * 298.65820 * 17 4 2 19 19 C 1.53192 * 109.33923 * 61.34875 * 18 17 4 20 20 N 1.46926 * 108.77740 * 305.34770 * 19 18 17 21 21 C 1.36938 * 120.63598 * 233.63714 * 20 19 18 22 22 H 1.07992 * 120.00595 * 150.16171 * 21 20 19 23 23 C 1.38819 * 119.99549 * 330.15982 * 21 20 19 24 24 N 1.31619 * 119.99679 * 344.48601 * 23 21 20 25 25 Si 1.86797 * 120.00224 * 164.48742 * 23 21 20 26 26 H 1.48503 * 109.46751 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47159 * 119.99571 * 25 23 21 28 28 H 1.48496 * 109.46972 * 240.00056 * 25 23 21 29 29 H 1.08996 * 109.47216 * 180.35285 * 1 2 3 30 30 H 1.09005 * 109.47222 * 300.35462 * 1 2 3 31 31 H 1.09004 * 109.47140 * 60.35230 * 1 2 3 32 32 H 0.97006 * 120.00290 * 24.99997 * 6 4 2 33 33 H 1.08000 * 122.62633 * 359.95288 * 10 9 7 34 34 H 1.07997 * 122.63091 * 179.97438 * 11 10 9 35 35 H 0.97000 * 120.00035 * 359.97438 * 14 13 12 36 36 H 0.97005 * 119.99778 * 180.02562 * 14 13 12 37 37 H 1.08999 * 109.50441 * 178.62958 * 17 4 2 38 38 H 1.09001 * 109.44749 * 58.64831 * 17 4 2 39 39 H 1.08995 * 109.50004 * 301.38158 * 18 17 4 40 40 H 1.09003 * 109.49866 * 181.31424 * 18 17 4 41 41 H 1.09002 * 109.59181 * 65.13420 * 19 18 17 42 42 H 1.09001 * 109.58705 * 185.56176 * 19 18 17 43 43 H 0.97009 * 119.99606 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 1 1.7655 -0.1672 2.1368 6 7 1.4514 -2.0679 1.3071 7 6 1.3283 -2.6964 2.4929 8 8 1.7094 -2.1525 3.5118 9 6 0.7339 -4.0414 2.5548 10 6 0.5584 -4.7722 3.6956 11 6 -0.0170 -5.9988 3.5070 12 6 -0.3231 -6.2932 2.2085 13 6 -0.9465 -7.5441 1.7474 14 7 -1.2031 -7.7260 0.4369 15 8 -1.2302 -8.4137 2.5490 16 16 0.1343 -4.9480 1.1727 17 6 3.5681 -0.8484 1.1705 18 6 3.9568 -1.6658 -0.0636 19 6 3.4650 -0.9469 -1.3238 20 7 2.0225 -0.6995 -1.1945 21 6 1.1535 -1.1134 -2.1685 22 1 0.1396 -1.3804 -1.9097 23 6 1.5759 -1.1897 -3.4887 24 7 2.6864 -0.5887 -3.8601 25 14 0.5682 -2.1452 -4.7381 26 1 -0.6265 -2.7236 -4.0721 27 1 0.1355 -1.2328 -5.8269 28 1 1.3948 -3.2392 -5.3081 29 1 -0.3633 -1.0276 0.0063 30 1 -0.3634 0.5193 0.8868 31 1 -0.3633 0.5084 -0.8932 32 1 1.1477 -2.5019 0.4944 33 1 0.8514 -4.4101 4.6700 34 1 -0.2138 -6.6810 4.3207 35 1 -0.9772 -7.0322 -0.2023 36 1 -1.6144 -8.5503 0.1330 37 1 3.9389 -1.3454 2.0669 38 1 4.0067 0.1470 1.0996 39 1 3.4982 -2.6528 -0.0054 40 1 5.0411 -1.7702 -0.1041 41 1 3.9902 0.0021 -1.4317 42 1 3.6517 -1.5717 -2.1972 43 1 2.9814 -0.6417 -4.7827 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993974563.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:00 Heat of formation + Delta-G solvation = -22.493485 kcal Electronic energy + Delta-G solvation = -27459.064939 eV Core-core repulsion = 23631.244112 eV Total energy + Delta-G solvation = -3827.820827 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.99997 -39.72495 -38.00193 -36.91492 -34.08688 -34.04382 -32.56374 -31.85959 -30.36229 -29.26329 -26.58219 -25.70664 -25.07540 -22.57944 -21.96867 -21.32817 -20.80146 -19.45714 -18.85127 -18.82228 -17.27912 -16.82687 -16.47814 -15.88846 -15.44314 -15.24743 -14.97827 -14.92195 -14.77402 -14.05882 -13.91119 -13.68711 -13.38125 -13.15118 -13.10657 -12.73690 -12.58955 -12.51304 -11.94416 -11.37331 -11.34674 -11.28477 -11.07696 -10.80406 -10.72697 -10.60625 -10.56318 -10.20533 -10.10837 -10.09945 -9.92388 -9.76524 -9.40420 -9.12126 -8.87997 -8.68515 -8.56727 -6.77281 -5.90878 -3.36950 -0.09151 1.09063 1.47926 1.90114 2.86407 3.11033 3.23538 3.25910 3.31815 3.33254 3.36002 4.35685 4.55482 4.84085 4.97463 5.13277 5.20646 5.23393 5.46233 5.49535 5.64431 5.68295 5.82816 5.86623 6.00942 6.02790 6.12500 6.22396 6.31853 6.38474 6.43625 6.53513 6.58401 6.68012 6.83715 6.85187 6.89598 6.95898 7.28510 7.56881 7.68374 7.74674 7.83309 8.30867 8.33296 9.08183 9.70956 10.28530 11.17060 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.010747 B = 0.004406 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.836598 B = 6353.562716 C = 8209.293337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.158 3.842 3 H 0.043 0.957 4 C 0.133 3.867 5 H 0.080 0.920 6 N -0.692 5.692 7 C 0.579 3.421 8 O -0.534 6.534 9 C -0.212 4.212 10 C -0.082 4.082 11 C -0.063 4.063 12 C -0.254 4.254 13 C 0.598 3.402 14 N -0.848 5.848 15 O -0.531 6.531 16 S 0.206 5.794 17 C -0.122 4.122 18 C -0.141 4.141 19 C 0.171 3.829 20 N -0.587 5.587 21 C -0.259 4.259 22 H 0.070 0.930 23 C 0.009 3.991 24 N -0.897 5.897 25 Si 0.897 3.103 26 H -0.277 1.277 27 H -0.290 1.290 28 H -0.289 1.289 29 H 0.051 0.949 30 H 0.040 0.960 31 H 0.066 0.934 32 H 0.407 0.593 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.403 0.597 36 H 0.410 0.590 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.019 0.981 42 H 0.086 0.914 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.266 -8.117 8.676 12.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.051 3.949 3 H 0.061 0.939 4 C 0.027 3.973 5 H 0.098 0.902 6 N -0.343 5.343 7 C 0.363 3.637 8 O -0.414 6.414 9 C -0.334 4.334 10 C -0.115 4.115 11 C -0.096 4.096 12 C -0.375 4.375 13 C 0.383 3.617 14 N -0.412 5.412 15 O -0.409 6.409 16 S 0.474 5.526 17 C -0.160 4.160 18 C -0.180 4.180 19 C 0.046 3.954 20 N -0.310 5.310 21 C -0.389 4.389 22 H 0.088 0.912 23 C -0.191 4.191 24 N -0.540 5.540 25 Si 0.727 3.273 26 H -0.202 1.202 27 H -0.217 1.217 28 H -0.216 1.216 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.243 0.757 33 H 0.177 0.823 34 H 0.175 0.825 35 H 0.231 0.769 36 H 0.242 0.758 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.038 0.962 42 H 0.104 0.896 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.136 -7.836 8.212 12.081 hybrid contribution -0.446 -0.889 -0.195 1.013 sum -4.582 -8.725 8.016 12.703 Atomic orbital electron populations 1.21796 0.95573 1.01335 1.00728 1.20739 0.93401 0.94050 0.86713 0.93948 1.21669 0.93101 0.82217 1.00272 0.90166 1.45938 1.61075 1.18995 1.08245 1.17077 0.78910 0.83235 0.84479 1.90786 1.50306 1.65988 1.34291 1.25147 1.10062 1.00610 0.97585 1.20553 0.98690 0.92881 0.99373 1.20551 0.96733 0.96527 0.95818 1.24815 1.13594 1.00342 0.98794 1.17039 0.77240 0.84914 0.82553 1.43703 1.65995 1.23649 1.07874 1.90856 1.52757 1.43348 1.53973 1.84345 1.53993 1.06250 1.07979 1.21793 0.95149 1.00723 0.98368 1.22152 0.99121 0.99452 0.97315 1.20801 0.83132 0.97236 0.94249 1.44187 1.03156 1.64867 1.18838 1.19163 0.95189 1.38362 0.86156 0.91193 1.25109 0.97733 0.99272 0.96988 1.70033 1.23953 1.43333 1.16709 0.86316 0.79615 0.79675 0.81695 1.20164 1.21701 1.21568 0.93004 0.94050 0.91538 0.75651 0.82269 0.82481 0.76852 0.75836 0.92964 0.91599 0.93006 0.93266 0.96243 0.89585 0.93616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 7.74 37.16 0.29 -2.04 16 2 C 0.16 2.94 3.20 -67.60 -0.22 2.73 16 3 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 4 C 0.13 2.24 2.33 -67.78 -0.16 2.08 16 5 H 0.08 1.34 7.58 -51.93 -0.39 0.95 16 6 N -0.69 -11.07 3.45 -54.82 -0.19 -11.26 16 7 C 0.58 9.19 7.77 -12.63 -0.10 9.09 16 8 O -0.53 -9.77 16.48 5.26 0.09 -9.69 16 9 C -0.21 -2.82 6.46 -36.54 -0.24 -3.06 16 10 C -0.08 -0.97 9.88 -40.69 -0.40 -1.37 16 11 C -0.06 -0.69 9.88 -40.69 -0.40 -1.09 16 12 C -0.25 -2.88 6.46 -36.54 -0.24 -3.12 16 13 C 0.60 6.92 8.08 -12.63 -0.10 6.82 16 14 N -0.85 -6.82 8.87 30.37 0.27 -6.55 16 15 O -0.53 -7.83 17.65 5.26 0.09 -7.74 16 16 S 0.21 2.32 21.40 -107.50 -2.30 0.02 16 17 C -0.12 -2.04 5.58 -26.66 -0.15 -2.19 16 18 C -0.14 -2.53 5.93 -26.61 -0.16 -2.69 16 19 C 0.17 3.71 5.28 -3.71 -0.02 3.69 16 20 N -0.59 -12.74 2.64 -164.77 -0.44 -13.18 16 21 C -0.26 -6.14 8.57 -15.06 -0.13 -6.27 16 22 H 0.07 1.60 6.24 -52.49 -0.33 1.28 16 23 C 0.01 0.22 4.94 -17.43 -0.09 0.13 16 24 N -0.90 -24.03 11.23 55.49 0.62 -23.40 16 25 Si 0.90 19.70 29.58 -169.99 -5.03 14.67 16 26 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 27 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 29 H 0.05 0.87 6.39 -51.93 -0.33 0.54 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.22 7.63 -51.93 -0.40 0.83 16 32 H 0.41 6.61 6.88 -40.82 -0.28 6.33 16 33 H 0.16 1.72 8.04 -52.49 -0.42 1.30 16 34 H 0.16 1.52 8.04 -52.49 -0.42 1.10 16 35 H 0.40 2.67 7.93 -40.82 -0.32 2.35 16 36 H 0.41 2.55 8.93 -40.82 -0.36 2.19 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.94 7.53 -51.93 -0.39 0.55 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 2.10 6.15 -51.93 -0.32 1.78 16 43 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 363.20 15.07 5.47 5.47 Total: -1.00 -29.82 363.20 -9.15 -38.98 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -5.64 Total: 9.98 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -2.10 Total: 2.70 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.27 Total: -54.39 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: 0.18 Total: -17.43 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.67 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.30 Total: 0.02 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.82 -9.15 -38.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993974563.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.486 kcal (2) G-P(sol) polarization free energy of solvation -29.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds