Wall clock time and date at job start Tue Mar 31 2020 20:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.70332 * 2 1 4 4 C 1.53194 * 109.58774 * 120.35794 * 2 1 3 5 5 H 1.08999 * 109.49688 * 294.40561 * 4 2 1 6 6 N 1.46495 * 109.49711 * 54.46691 * 4 2 1 7 7 C 1.34775 * 120.00302 * 205.00076 * 6 4 2 8 8 O 1.21622 * 119.99756 * 359.97438 * 7 6 4 9 9 C 1.47171 * 120.00224 * 180.02562 * 7 6 4 10 10 C 1.36614 * 125.16140 * 180.02562 * 9 7 6 11 11 C 1.36787 * 114.74649 * 179.97438 * 10 9 7 12 12 C 1.36619 * 114.74554 * 359.97438 * 11 10 9 13 13 C 1.47174 * 125.16239 * 180.02562 * 12 11 10 14 14 N 1.34773 * 119.99693 * 180.02562 * 13 12 11 15 15 O 1.21622 * 120.00042 * 0.02562 * 13 12 11 16 16 S 1.75837 * 125.16022 * 359.69453 * 9 7 6 17 17 C 1.53104 * 109.33196 * 174.42006 * 4 2 1 18 18 C 1.53038 * 109.50329 * 298.65820 * 17 4 2 19 19 C 1.53192 * 109.33923 * 61.34875 * 18 17 4 20 20 N 1.46926 * 108.77740 * 305.34770 * 19 18 17 21 21 C 1.36938 * 120.63598 * 233.63714 * 20 19 18 22 22 H 1.07992 * 120.00595 * 150.16171 * 21 20 19 23 23 C 1.38819 * 119.99549 * 330.15982 * 21 20 19 24 24 N 1.31619 * 119.99679 * 344.48601 * 23 21 20 25 25 Si 1.86797 * 120.00224 * 164.48742 * 23 21 20 26 26 H 1.48503 * 109.46751 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47159 * 119.99571 * 25 23 21 28 28 H 1.48496 * 109.46972 * 240.00056 * 25 23 21 29 29 H 1.08996 * 109.47216 * 180.35285 * 1 2 3 30 30 H 1.09005 * 109.47222 * 300.35462 * 1 2 3 31 31 H 1.09004 * 109.47140 * 60.35230 * 1 2 3 32 32 H 0.97006 * 120.00290 * 24.99997 * 6 4 2 33 33 H 1.08000 * 122.62633 * 359.95288 * 10 9 7 34 34 H 1.07997 * 122.63091 * 179.97438 * 11 10 9 35 35 H 0.97000 * 120.00035 * 359.97438 * 14 13 12 36 36 H 0.97005 * 119.99778 * 180.02562 * 14 13 12 37 37 H 1.08999 * 109.50441 * 178.62958 * 17 4 2 38 38 H 1.09001 * 109.44749 * 58.64831 * 17 4 2 39 39 H 1.08995 * 109.50004 * 301.38158 * 18 17 4 40 40 H 1.09003 * 109.49866 * 181.31424 * 18 17 4 41 41 H 1.09002 * 109.59181 * 65.13420 * 19 18 17 42 42 H 1.09001 * 109.58705 * 185.56176 * 19 18 17 43 43 H 0.97009 * 119.99606 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 1 1.7655 -0.1672 2.1368 6 7 1.4514 -2.0679 1.3071 7 6 1.3283 -2.6964 2.4929 8 8 1.7094 -2.1525 3.5118 9 6 0.7339 -4.0414 2.5548 10 6 0.5584 -4.7722 3.6956 11 6 -0.0170 -5.9988 3.5070 12 6 -0.3231 -6.2932 2.2085 13 6 -0.9465 -7.5441 1.7474 14 7 -1.2031 -7.7260 0.4369 15 8 -1.2302 -8.4137 2.5490 16 16 0.1343 -4.9480 1.1727 17 6 3.5681 -0.8484 1.1705 18 6 3.9568 -1.6658 -0.0636 19 6 3.4650 -0.9469 -1.3238 20 7 2.0225 -0.6995 -1.1945 21 6 1.1535 -1.1134 -2.1685 22 1 0.1396 -1.3804 -1.9097 23 6 1.5759 -1.1897 -3.4887 24 7 2.6864 -0.5887 -3.8601 25 14 0.5682 -2.1452 -4.7381 26 1 -0.6265 -2.7236 -4.0721 27 1 0.1355 -1.2328 -5.8269 28 1 1.3948 -3.2392 -5.3081 29 1 -0.3633 -1.0276 0.0063 30 1 -0.3634 0.5193 0.8868 31 1 -0.3633 0.5084 -0.8932 32 1 1.1477 -2.5019 0.4944 33 1 0.8514 -4.4101 4.6700 34 1 -0.2138 -6.6810 4.3207 35 1 -0.9772 -7.0322 -0.2023 36 1 -1.6144 -8.5503 0.1330 37 1 3.9389 -1.3454 2.0669 38 1 4.0067 0.1470 1.0996 39 1 3.4982 -2.6528 -0.0054 40 1 5.0411 -1.7702 -0.1041 41 1 3.9902 0.0021 -1.4317 42 1 3.6517 -1.5717 -2.1972 43 1 2.9814 -0.6417 -4.7827 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993974563.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:00 Heat of formation + Delta-G solvation = -42.389773 kcal Electronic energy + Delta-G solvation = -27459.927706 eV Core-core repulsion = 23631.244112 eV Total energy + Delta-G solvation = -3828.683595 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.26946 -40.68000 -39.35470 -37.98069 -35.64156 -34.88853 -34.07927 -33.43502 -31.66944 -30.57025 -27.99901 -26.95798 -26.63156 -23.98315 -22.95600 -22.62316 -22.29576 -20.51666 -20.20140 -19.89141 -18.31637 -18.05313 -17.82764 -17.05374 -16.81502 -16.41618 -16.33646 -16.00937 -15.92809 -15.65308 -15.20219 -15.04316 -14.77916 -14.56698 -14.25558 -14.22398 -13.66745 -13.57184 -13.37429 -12.94102 -12.89085 -12.72414 -12.43029 -12.29891 -12.23849 -12.15946 -11.87512 -11.67220 -11.53742 -11.38812 -11.17633 -11.01857 -10.90561 -10.48419 -10.19022 -9.89026 -9.74459 -8.58927 -7.79140 -5.26283 -1.04702 0.16618 0.55311 0.95522 1.51098 1.54893 1.62827 1.91474 2.08861 2.13584 2.32856 2.56501 3.37789 3.60258 3.65433 3.79587 4.01426 4.05876 4.06577 4.20893 4.25754 4.39692 4.56506 4.66744 4.74780 4.83561 4.92538 4.95575 5.00301 5.04141 5.12269 5.15585 5.22132 5.35128 5.44982 5.53254 5.59391 5.70492 5.77014 5.81628 6.14348 6.46431 6.48279 7.05433 7.07119 7.22166 7.91528 8.45409 9.27633 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.010747 B = 0.004406 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.836598 B = 6353.562716 C = 8209.293337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.156 3.844 3 H 0.035 0.965 4 C 0.142 3.858 5 H 0.087 0.913 6 N -0.692 5.692 7 C 0.583 3.417 8 O -0.562 6.562 9 C -0.242 4.242 10 C -0.068 4.068 11 C -0.065 4.065 12 C -0.252 4.252 13 C 0.597 3.403 14 N -0.830 5.830 15 O -0.567 6.567 16 S 0.235 5.765 17 C -0.116 4.116 18 C -0.127 4.127 19 C 0.180 3.820 20 N -0.597 5.597 21 C -0.247 4.247 22 H 0.082 0.918 23 C -0.047 4.047 24 N -0.935 5.935 25 Si 0.953 3.047 26 H -0.255 1.255 27 H -0.303 1.303 28 H -0.296 1.296 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.406 0.594 33 H 0.168 0.832 34 H 0.171 0.829 35 H 0.412 0.588 36 H 0.421 0.579 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.051 0.949 40 H 0.062 0.938 41 H -0.005 1.005 42 H 0.055 0.945 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.489 -9.317 9.653 14.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.049 3.951 3 H 0.053 0.947 4 C 0.036 3.964 5 H 0.105 0.895 6 N -0.342 5.342 7 C 0.369 3.631 8 O -0.443 6.443 9 C -0.364 4.364 10 C -0.101 4.101 11 C -0.099 4.099 12 C -0.374 4.374 13 C 0.381 3.619 14 N -0.394 5.394 15 O -0.448 6.448 16 S 0.504 5.496 17 C -0.155 4.155 18 C -0.167 4.167 19 C 0.054 3.946 20 N -0.321 5.321 21 C -0.377 4.377 22 H 0.099 0.901 23 C -0.242 4.242 24 N -0.581 5.581 25 Si 0.783 3.217 26 H -0.179 1.179 27 H -0.231 1.231 28 H -0.223 1.223 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.243 0.757 33 H 0.185 0.815 34 H 0.188 0.812 35 H 0.242 0.758 36 H 0.254 0.746 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.014 0.986 42 H 0.073 0.927 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.389 -9.043 9.170 13.961 hybrid contribution -0.088 -0.510 -0.472 0.700 sum -5.477 -9.552 8.699 14.032 Atomic orbital electron populations 1.21724 0.94188 1.01689 1.01123 1.20861 0.94562 0.93581 0.86098 0.94729 1.21470 0.93029 0.82706 0.99235 0.89517 1.45875 1.61194 1.18660 1.08433 1.17281 0.78207 0.83840 0.83737 1.90768 1.51571 1.66979 1.34981 1.24944 1.12179 1.00145 0.99135 1.20685 0.97414 0.92661 0.99369 1.20686 0.96516 0.96438 0.96217 1.24959 1.12977 1.00335 0.99159 1.17105 0.77065 0.84514 0.83218 1.43587 1.64627 1.24301 1.06884 1.90846 1.54469 1.44392 1.55055 1.84189 1.53263 1.05418 1.06725 1.21749 0.95243 1.00813 0.97701 1.21966 0.99844 0.98967 0.95879 1.20570 0.83336 0.95805 0.94899 1.44368 1.02968 1.65403 1.19365 1.19507 0.95600 1.36299 0.86309 0.90081 1.25772 0.98848 1.00772 0.98817 1.70188 1.25912 1.45594 1.16400 0.85412 0.78958 0.78017 0.79356 1.17901 1.23138 1.22274 0.92630 0.91628 0.93146 0.75735 0.81494 0.81199 0.75773 0.74579 0.92377 0.91107 0.93015 0.91928 0.98647 0.92652 0.94540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 7.74 71.98 0.56 -3.63 16 2 C 0.16 5.61 3.20 44.97 0.14 5.76 16 3 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 4 C 0.14 4.53 2.33 45.09 0.10 4.64 16 5 H 0.09 2.72 7.58 -2.39 -0.02 2.71 16 6 N -0.69 -20.87 3.45 -445.59 -1.54 -22.41 16 7 C 0.58 17.46 7.77 86.59 0.67 18.13 16 8 O -0.56 -19.63 16.48 -4.10 -0.07 -19.70 16 9 C -0.24 -5.96 6.46 24.24 0.16 -5.80 16 10 C -0.07 -1.46 9.88 21.55 0.21 -1.24 16 11 C -0.07 -1.29 9.88 21.55 0.21 -1.08 16 12 C -0.25 -5.16 6.46 24.24 0.16 -5.00 16 13 C 0.60 12.56 8.08 86.59 0.70 13.26 16 14 N -0.83 -11.29 8.87 -176.07 -1.56 -12.85 16 15 O -0.57 -15.84 17.65 -4.10 -0.07 -15.91 16 16 S 0.23 4.73 21.40 -56.49 -1.21 3.52 16 17 C -0.12 -3.73 5.58 30.64 0.17 -3.56 16 18 C -0.13 -4.46 5.93 30.67 0.18 -4.28 16 19 C 0.18 7.86 5.28 86.36 0.46 8.32 16 20 N -0.60 -25.75 2.64 -675.22 -1.78 -27.54 16 21 C -0.25 -11.55 8.57 84.03 0.72 -10.83 16 22 H 0.08 3.57 6.24 -2.91 -0.02 3.55 16 23 C -0.05 -2.34 4.94 84.86 0.42 -1.92 16 24 N -0.93 -51.38 11.23 21.65 0.24 -51.14 16 25 Si 0.95 40.40 29.58 68.60 2.03 42.43 16 26 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 27 H -0.30 -13.44 7.11 99.48 0.71 -12.74 16 28 H -0.30 -12.72 7.11 99.48 0.71 -12.02 16 29 H 0.05 1.74 6.39 -2.39 -0.02 1.72 16 30 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.05 1.78 7.63 -2.39 -0.02 1.76 16 32 H 0.41 12.42 6.88 -92.70 -0.64 11.79 16 33 H 0.17 3.27 8.04 -2.91 -0.02 3.25 16 34 H 0.17 2.93 8.04 -2.91 -0.02 2.91 16 35 H 0.41 4.30 7.93 -92.71 -0.74 3.56 16 36 H 0.42 4.21 8.93 -92.70 -0.83 3.38 16 37 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.05 1.81 7.53 -2.39 -0.02 1.79 16 40 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 42 H 0.06 2.77 6.15 -2.39 -0.01 2.76 16 43 H 0.25 13.31 8.31 -92.70 -0.77 12.54 16 Total: -1.00 -63.92 363.20 -0.21 -64.13 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: -1.12 Total: 26.72 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: 4.86 Total: 12.76 kcal Atomic # 7 Polarization: -109.30 SS G_CDS: -4.64 Total: -113.93 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -0.14 Total: -35.61 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Atomic # 16 Polarization: 4.73 SS G_CDS: -1.21 Total: 3.52 kcal Total: -63.92 -0.21 -64.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993974563.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.736 kcal (2) G-P(sol) polarization free energy of solvation -63.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds