Wall clock time and date at job start Tue Mar 31 2020 20:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.58482 * 2 1 4 4 C 1.53193 * 109.58786 * 239.57297 * 2 1 3 5 5 H 1.09004 * 109.49526 * 305.52973 * 4 2 1 6 6 N 1.46501 * 109.49698 * 65.59055 * 4 2 1 7 7 C 1.34776 * 119.99924 * 205.00189 * 6 4 2 8 8 O 1.21626 * 120.00012 * 359.97438 * 7 6 4 9 9 C 1.47167 * 120.00022 * 179.97438 * 7 6 4 10 10 C 1.36620 * 125.16255 * 179.71512 * 9 7 6 11 11 C 1.36795 * 114.74318 * 179.85626 * 10 9 7 12 12 C 1.36619 * 114.74728 * 0.43351 * 11 10 9 13 13 C 1.47163 * 125.16241 * 179.76350 * 12 11 10 14 14 N 1.34772 * 120.00240 * 180.02562 * 13 12 11 15 15 O 1.21632 * 120.00227 * 0.02562 * 13 12 11 16 16 S 1.75832 * 109.67375 * 359.76669 * 12 11 10 17 17 C 1.53034 * 109.31371 * 185.57647 * 4 2 1 18 18 C 1.53040 * 109.53964 * 61.36263 * 17 4 2 19 19 C 1.53622 * 109.24165 * 298.51558 * 18 17 4 20 20 N 1.46918 * 108.54790 * 54.85143 * 19 18 17 21 21 C 1.36936 * 120.63020 * 126.36407 * 20 19 18 22 22 H 1.08002 * 120.00338 * 209.43467 * 21 20 19 23 23 C 1.38811 * 119.99986 * 29.44092 * 21 20 19 24 24 N 1.31621 * 120.00133 * 24.34347 * 23 21 20 25 25 Si 1.86801 * 120.00159 * 204.34298 * 23 21 20 26 26 H 1.48504 * 109.46707 * 89.99987 * 25 23 21 27 27 H 1.48498 * 109.47082 * 330.00336 * 25 23 21 28 28 H 1.48496 * 109.47095 * 209.99844 * 25 23 21 29 29 H 1.08996 * 109.47424 * 299.71485 * 1 2 3 30 30 H 1.08996 * 109.47355 * 59.72159 * 1 2 3 31 31 H 1.09001 * 109.46757 * 179.72051 * 1 2 3 32 32 H 0.96998 * 120.00228 * 24.99972 * 6 4 2 33 33 H 1.07998 * 122.62559 * 0.03672 * 10 9 7 34 34 H 1.08001 * 122.62537 * 180.18094 * 11 10 9 35 35 H 0.97002 * 119.99778 * 0.02562 * 14 13 12 36 36 H 0.97006 * 120.00421 * 179.97438 * 14 13 12 37 37 H 1.08996 * 109.46160 * 181.38940 * 17 4 2 38 38 H 1.09007 * 109.46201 * 301.34634 * 17 4 2 39 39 H 1.08995 * 109.49842 * 58.58704 * 18 17 4 40 40 H 1.09004 * 109.49995 * 178.68413 * 18 17 4 41 41 H 1.09002 * 109.73892 * 295.11263 * 19 18 17 42 42 H 1.09002 * 109.66407 * 174.55465 * 19 18 17 43 43 H 0.97001 * 119.99789 * 4.04228 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7309 -1.2445 5 1 1.6030 -1.7269 -1.2891 6 7 1.6698 0.0232 -2.4436 7 6 1.5464 -0.6102 -3.6268 8 8 1.7458 -1.8078 -3.6992 9 6 1.1704 0.1473 -4.8312 10 6 1.0215 -0.3847 -6.0807 11 6 0.6632 0.5147 -7.0471 12 6 0.5217 1.8005 -6.6074 13 6 0.1491 2.9481 -7.4499 14 7 0.0393 4.1762 -6.9057 15 8 -0.0596 2.7884 -8.6375 16 16 0.8523 1.8759 -4.8821 17 6 3.5675 -0.8494 -1.1691 18 6 3.9569 -1.6655 0.0656 19 6 3.4656 -0.9402 1.3275 20 7 2.0226 -0.6980 1.1954 21 6 1.1538 -1.1099 2.1704 22 1 0.1391 -1.3753 1.9126 23 6 1.5772 -1.1865 3.4901 24 7 2.5878 -0.4499 3.9008 25 14 0.7128 -2.3348 4.6833 26 1 1.3718 -3.6653 4.6550 27 1 -0.7112 -2.4792 4.2876 28 1 0.7908 -1.7728 6.0556 29 1 -0.3634 0.5094 0.8925 30 1 -0.3634 0.5181 -0.8874 31 1 -0.3633 -1.0277 -0.0050 32 1 1.5111 0.9784 -2.3859 33 1 1.1718 -1.4338 -6.2886 34 1 0.5085 0.2314 -8.0777 35 1 0.2061 4.3037 -5.9587 36 1 -0.2059 4.9327 -7.4611 37 1 3.9378 -1.3473 -2.0652 38 1 4.0061 0.1461 -1.0995 39 1 3.4984 -2.6527 0.0086 40 1 5.0413 -1.7693 0.1059 41 1 3.9877 0.0109 1.4323 42 1 3.6533 -1.5608 2.2038 43 1 2.9989 0.1890 3.2977 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993974572.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:05 Heat of formation + Delta-G solvation = -25.390093 kcal Electronic energy + Delta-G solvation = -26644.790699 eV Core-core repulsion = 22816.844266 eV Total energy + Delta-G solvation = -3827.946433 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.14227 -39.88532 -38.14094 -37.16041 -34.65239 -34.24975 -32.80531 -31.92076 -30.48972 -29.05352 -26.66491 -25.82681 -24.91577 -22.69315 -22.13105 -21.05684 -20.97470 -19.92676 -19.47934 -18.76065 -17.50494 -17.17187 -16.80906 -16.20647 -15.70825 -15.42206 -15.07736 -15.00492 -14.69972 -14.23646 -13.94576 -13.72287 -13.52218 -13.49352 -13.33894 -12.86519 -12.74199 -12.60633 -11.96494 -11.59135 -11.43767 -11.33926 -11.16277 -10.80087 -10.75390 -10.49600 -10.43202 -10.29306 -10.26415 -10.11779 -10.09889 -9.91014 -9.34968 -9.24251 -9.10516 -8.89952 -8.40929 -6.95437 -6.12384 -3.30974 -0.30912 0.84358 1.22303 1.70904 2.67050 2.90354 3.01238 3.03143 3.48316 3.49739 3.65855 4.34298 4.50295 4.58670 4.76945 4.94104 5.09824 5.20359 5.34553 5.46305 5.50122 5.56978 5.63426 5.74661 5.83635 5.86323 6.02528 6.15858 6.19407 6.24489 6.30500 6.37605 6.48709 6.51247 6.58408 6.69441 6.80360 6.89940 7.04264 7.13700 7.41887 7.64279 7.97543 8.07625 8.52622 9.03637 9.78519 10.21147 11.16747 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.023242 B = 0.002523 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.439294 B =11095.650407 C =11474.874190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.169 3.831 3 H 0.026 0.974 4 C 0.131 3.869 5 H 0.091 0.909 6 N -0.710 5.710 7 C 0.582 3.418 8 O -0.520 6.520 9 C -0.210 4.210 10 C -0.078 4.078 11 C -0.060 4.060 12 C -0.247 4.247 13 C 0.597 3.403 14 N -0.848 5.848 15 O -0.527 6.527 16 S 0.186 5.814 17 C -0.118 4.118 18 C -0.134 4.134 19 C 0.148 3.852 20 N -0.588 5.588 21 C -0.351 4.351 22 H 0.062 0.938 23 C -0.021 4.021 24 N -0.916 5.916 25 Si 1.068 2.932 26 H -0.292 1.292 27 H -0.292 1.292 28 H -0.290 1.290 29 H 0.065 0.935 30 H 0.037 0.963 31 H 0.056 0.944 32 H 0.393 0.607 33 H 0.162 0.838 34 H 0.160 0.840 35 H 0.401 0.599 36 H 0.411 0.589 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.019 0.981 42 H 0.080 0.920 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.520 8.209 -18.670 20.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.061 3.939 3 H 0.043 0.957 4 C 0.026 3.974 5 H 0.109 0.891 6 N -0.360 5.360 7 C 0.366 3.634 8 O -0.397 6.397 9 C -0.332 4.332 10 C -0.111 4.111 11 C -0.093 4.093 12 C -0.369 4.369 13 C 0.381 3.619 14 N -0.412 5.412 15 O -0.405 6.405 16 S 0.454 5.546 17 C -0.157 4.157 18 C -0.174 4.174 19 C 0.023 3.977 20 N -0.313 5.313 21 C -0.480 4.480 22 H 0.080 0.920 23 C -0.224 4.224 24 N -0.555 5.555 25 Si 0.898 3.102 26 H -0.220 1.220 27 H -0.218 1.218 28 H -0.216 1.216 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.227 0.773 33 H 0.180 0.820 34 H 0.178 0.822 35 H 0.230 0.770 36 H 0.243 0.757 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.037 0.963 42 H 0.099 0.901 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.486 7.674 -16.712 18.556 hybrid contribution -0.063 0.397 -2.385 2.419 sum -2.549 8.071 -19.097 20.888 Atomic orbital electron populations 1.21800 0.95312 1.01893 1.00207 1.20546 0.93594 0.93227 0.86500 0.95676 1.21888 0.95290 0.97035 0.83210 0.89068 1.46049 1.69706 1.11915 1.08337 1.17046 0.77775 0.86725 0.81839 1.90840 1.50229 1.13682 1.84963 1.25110 1.12045 0.96988 0.99105 1.20623 0.98376 1.02237 0.89823 1.20607 0.96930 0.90079 1.01722 1.24753 1.15711 0.98663 0.97723 1.17032 0.76253 0.82117 0.86458 1.43683 1.73680 1.09705 1.14182 1.90878 1.50045 1.84606 1.14947 1.83912 1.63397 1.04513 1.02826 1.21773 0.95166 1.00187 0.98542 1.22135 0.99448 0.99771 0.96067 1.21111 0.84085 0.96807 0.95717 1.44121 1.02633 1.65605 1.18906 1.19973 0.96301 1.43700 0.88010 0.91988 1.25876 1.00176 1.00539 0.95793 1.70764 1.26062 1.21093 1.37613 0.83459 0.74948 0.75966 0.75816 1.21978 1.21837 1.21623 0.91593 0.94446 0.92489 0.77299 0.82033 0.82229 0.77043 0.75736 0.92751 0.92635 0.92010 0.92660 0.96324 0.90120 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 7.83 37.16 0.29 -2.13 16 2 C 0.17 3.23 3.03 -67.60 -0.20 3.03 16 3 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 4 C 0.13 2.24 1.99 -67.81 -0.14 2.11 16 5 H 0.09 1.82 7.58 -51.93 -0.39 1.42 16 6 N -0.71 -9.81 4.58 -54.85 -0.25 -10.06 16 7 C 0.58 8.37 7.77 -12.64 -0.10 8.27 16 8 O -0.52 -9.32 16.48 5.25 0.09 -9.23 16 9 C -0.21 -2.35 6.46 -36.54 -0.24 -2.59 16 10 C -0.08 -0.79 9.88 -40.69 -0.40 -1.19 16 11 C -0.06 -0.55 9.88 -40.69 -0.40 -0.95 16 12 C -0.25 -2.23 6.46 -36.54 -0.24 -2.47 16 13 C 0.60 5.57 8.07 -12.64 -0.10 5.47 16 14 N -0.85 -4.60 8.87 30.37 0.27 -4.33 16 15 O -0.53 -6.79 17.65 5.25 0.09 -6.69 16 16 S 0.19 1.48 21.40 -107.50 -2.30 -0.82 16 17 C -0.12 -1.99 5.46 -26.69 -0.15 -2.14 16 18 C -0.13 -2.50 6.10 -26.39 -0.16 -2.66 16 19 C 0.15 3.30 4.71 -3.49 -0.02 3.29 16 20 N -0.59 -13.73 2.83 -164.52 -0.46 -14.19 16 21 C -0.35 -9.17 8.48 -15.06 -0.13 -9.30 16 22 H 0.06 1.63 6.30 -52.49 -0.33 1.30 16 23 C -0.02 -0.58 4.69 -17.43 -0.08 -0.66 16 24 N -0.92 -26.36 12.51 55.49 0.69 -25.66 16 25 Si 1.07 24.61 29.98 -169.99 -5.10 19.51 16 26 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 29 H 0.07 1.28 7.62 -51.93 -0.40 0.89 16 30 H 0.04 0.54 7.80 -51.93 -0.41 0.14 16 31 H 0.06 1.10 7.44 -51.93 -0.39 0.71 16 32 H 0.39 4.47 7.71 -40.82 -0.31 4.16 16 33 H 0.16 1.54 8.04 -52.49 -0.42 1.12 16 34 H 0.16 1.29 8.04 -52.49 -0.42 0.87 16 35 H 0.40 1.38 7.93 -40.82 -0.32 1.05 16 36 H 0.41 1.57 8.93 -40.82 -0.36 1.21 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.89 8.14 -51.92 -0.42 0.46 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.02 0.42 7.84 -51.93 -0.41 0.01 16 42 H 0.08 2.03 6.41 -51.93 -0.33 1.70 16 43 H 0.27 7.77 6.63 -40.82 -0.27 7.50 16 LS Contribution 365.42 15.07 5.51 5.51 Total: -1.00 -32.96 365.42 -9.20 -42.16 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.68 Total: 5.74 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -2.06 Total: -1.93 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 0.25 Total: -54.24 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.18 Total: -15.93 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.10 Total: 19.51 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.30 Total: -0.82 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.96 -9.20 -42.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993974572.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.770 kcal (2) G-P(sol) polarization free energy of solvation -32.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds