Wall clock time and date at job start Tue Mar 31 2020 20:36:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09002 * 109.58482 * 2 1
4 4 C 1.53193 * 109.58786 * 239.57297 * 2 1 3
5 5 H 1.09004 * 109.49526 * 305.52973 * 4 2 1
6 6 N 1.46501 * 109.49698 * 65.59055 * 4 2 1
7 7 C 1.34776 * 119.99924 * 205.00189 * 6 4 2
8 8 O 1.21626 * 120.00012 * 359.97438 * 7 6 4
9 9 C 1.47167 * 120.00022 * 179.97438 * 7 6 4
10 10 C 1.36620 * 125.16255 * 179.71512 * 9 7 6
11 11 C 1.36795 * 114.74318 * 179.85626 * 10 9 7
12 12 C 1.36619 * 114.74728 * 0.43351 * 11 10 9
13 13 C 1.47163 * 125.16241 * 179.76350 * 12 11 10
14 14 N 1.34772 * 120.00240 * 180.02562 * 13 12 11
15 15 O 1.21632 * 120.00227 * 0.02562 * 13 12 11
16 16 S 1.75832 * 109.67375 * 359.76669 * 12 11 10
17 17 C 1.53034 * 109.31371 * 185.57647 * 4 2 1
18 18 C 1.53040 * 109.53964 * 61.36263 * 17 4 2
19 19 C 1.53622 * 109.24165 * 298.51558 * 18 17 4
20 20 N 1.46918 * 108.54790 * 54.85143 * 19 18 17
21 21 C 1.36936 * 120.63020 * 126.36407 * 20 19 18
22 22 H 1.08002 * 120.00338 * 209.43467 * 21 20 19
23 23 C 1.38811 * 119.99986 * 29.44092 * 21 20 19
24 24 N 1.31621 * 120.00133 * 24.34347 * 23 21 20
25 25 Si 1.86801 * 120.00159 * 204.34298 * 23 21 20
26 26 H 1.48504 * 109.46707 * 89.99987 * 25 23 21
27 27 H 1.48498 * 109.47082 * 330.00336 * 25 23 21
28 28 H 1.48496 * 109.47095 * 209.99844 * 25 23 21
29 29 H 1.08996 * 109.47424 * 299.71485 * 1 2 3
30 30 H 1.08996 * 109.47355 * 59.72159 * 1 2 3
31 31 H 1.09001 * 109.46757 * 179.72051 * 1 2 3
32 32 H 0.96998 * 120.00228 * 24.99972 * 6 4 2
33 33 H 1.07998 * 122.62559 * 0.03672 * 10 9 7
34 34 H 1.08001 * 122.62537 * 180.18094 * 11 10 9
35 35 H 0.97002 * 119.99778 * 0.02562 * 14 13 12
36 36 H 0.97006 * 120.00421 * 179.97438 * 14 13 12
37 37 H 1.08996 * 109.46160 * 181.38940 * 17 4 2
38 38 H 1.09007 * 109.46201 * 301.34634 * 17 4 2
39 39 H 1.08995 * 109.49842 * 58.58704 * 18 17 4
40 40 H 1.09004 * 109.49995 * 178.68413 * 18 17 4
41 41 H 1.09002 * 109.73892 * 295.11263 * 19 18 17
42 42 H 1.09002 * 109.66407 * 174.55465 * 19 18 17
43 43 H 0.97001 * 119.99789 * 4.04228 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8954 1.0270 0.0000
4 6 2.0436 -0.7309 -1.2445
5 1 1.6030 -1.7269 -1.2891
6 7 1.6698 0.0232 -2.4436
7 6 1.5464 -0.6102 -3.6268
8 8 1.7458 -1.8078 -3.6992
9 6 1.1704 0.1473 -4.8312
10 6 1.0215 -0.3847 -6.0807
11 6 0.6632 0.5147 -7.0471
12 6 0.5217 1.8005 -6.6074
13 6 0.1491 2.9481 -7.4499
14 7 0.0393 4.1762 -6.9057
15 8 -0.0596 2.7884 -8.6375
16 16 0.8523 1.8759 -4.8821
17 6 3.5675 -0.8494 -1.1691
18 6 3.9569 -1.6655 0.0656
19 6 3.4656 -0.9402 1.3275
20 7 2.0226 -0.6980 1.1954
21 6 1.1538 -1.1099 2.1704
22 1 0.1391 -1.3753 1.9126
23 6 1.5772 -1.1865 3.4901
24 7 2.5878 -0.4499 3.9008
25 14 0.7128 -2.3348 4.6833
26 1 1.3718 -3.6653 4.6550
27 1 -0.7112 -2.4792 4.2876
28 1 0.7908 -1.7728 6.0556
29 1 -0.3634 0.5094 0.8925
30 1 -0.3634 0.5181 -0.8874
31 1 -0.3633 -1.0277 -0.0050
32 1 1.5111 0.9784 -2.3859
33 1 1.1718 -1.4338 -6.2886
34 1 0.5085 0.2314 -8.0777
35 1 0.2061 4.3037 -5.9587
36 1 -0.2059 4.9327 -7.4611
37 1 3.9378 -1.3473 -2.0652
38 1 4.0061 0.1461 -1.0995
39 1 3.4984 -2.6527 0.0086
40 1 5.0413 -1.7693 0.1059
41 1 3.9877 0.0109 1.4323
42 1 3.6533 -1.5608 2.2038
43 1 2.9989 0.1890 3.2977
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000993974572.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:36:05
Heat of formation + Delta-G solvation = -49.458102 kcal
Electronic energy + Delta-G solvation = -26645.834367 eV
Core-core repulsion = 22816.844266 eV
Total energy + Delta-G solvation = -3828.990100 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 337.125 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.30606 -40.69347 -39.54070 -38.09035 -36.17960 -34.90444 -34.40988 -33.54295
-31.61819 -30.45375 -28.07361 -27.06504 -26.52806 -24.05364 -22.91274 -22.60787
-22.24154 -21.31006 -20.32701 -19.89097 -18.90699 -18.17503 -17.86458 -17.21874
-16.72652 -16.44668 -16.29737 -16.09056 -15.99733 -15.68184 -15.46901 -15.14211
-14.98372 -14.93618 -14.38379 -14.19061 -13.76894 -13.52646 -13.41229 -13.05413
-12.98806 -12.76624 -12.58439 -12.33385 -12.07971 -11.95568 -11.90448 -11.83452
-11.72927 -11.55917 -11.31364 -11.04455 -10.90695 -10.48601 -10.28693 -9.98988
-9.74631 -8.89622 -8.20194 -5.36812 -1.10477 0.11220 0.47004 0.90654
1.60211 1.66386 1.82959 1.86130 1.86799 2.06913 2.30743 2.67072
3.25132 3.42507 3.59337 3.77240 3.81462 3.92076 4.01410 4.07344
4.21471 4.22162 4.35229 4.50024 4.64344 4.69331 4.80532 4.81656
4.87931 4.92555 5.01068 5.05872 5.11297 5.13168 5.26030 5.28479
5.36706 5.51812 5.70769 5.94756 6.15663 6.30852 6.45548 6.96073
7.06198 7.09109 7.80819 8.24405 9.06559
Molecular weight = 337.12amu
Principal moments of inertia in cm(-1)
A = 0.023242 B = 0.002523 C = 0.002440
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1204.439294 B =11095.650407 C =11474.874190
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C 0.166 3.834
3 H 0.037 0.963
4 C 0.147 3.853
5 H 0.063 0.937
6 N -0.701 5.701
7 C 0.586 3.414
8 O -0.562 6.562
9 C -0.245 4.245
10 C -0.069 4.069
11 C -0.068 4.068
12 C -0.249 4.249
13 C 0.596 3.404
14 N -0.827 5.827
15 O -0.568 6.568
16 S 0.261 5.739
17 C -0.111 4.111
18 C -0.125 4.125
19 C 0.154 3.846
20 N -0.607 5.607
21 C -0.345 4.345
22 H 0.058 0.942
23 C -0.073 4.073
24 N -0.945 5.945
25 Si 1.111 2.889
26 H -0.289 1.289
27 H -0.274 1.274
28 H -0.295 1.295
29 H 0.047 0.953
30 H 0.075 0.925
31 H 0.039 0.961
32 H 0.408 0.592
33 H 0.161 0.839
34 H 0.167 0.833
35 H 0.413 0.587
36 H 0.421 0.579
37 H 0.060 0.940
38 H 0.071 0.929
39 H 0.046 0.954
40 H 0.077 0.923
41 H 0.015 0.985
42 H 0.045 0.955
43 H 0.257 0.743
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.083 9.763 -20.182 22.631
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C 0.059 3.941
3 H 0.055 0.945
4 C 0.041 3.959
5 H 0.081 0.919
6 N -0.352 5.352
7 C 0.372 3.628
8 O -0.442 6.442
9 C -0.367 4.367
10 C -0.103 4.103
11 C -0.102 4.102
12 C -0.371 4.371
13 C 0.379 3.621
14 N -0.392 5.392
15 O -0.448 6.448
16 S 0.530 5.470
17 C -0.150 4.150
18 C -0.164 4.164
19 C 0.028 3.972
20 N -0.332 5.332
21 C -0.474 4.474
22 H 0.076 0.924
23 C -0.270 4.270
24 N -0.587 5.587
25 Si 0.937 3.063
26 H -0.216 1.216
27 H -0.199 1.199
28 H -0.222 1.222
29 H 0.066 0.934
30 H 0.094 0.906
31 H 0.058 0.942
32 H 0.244 0.756
33 H 0.179 0.821
34 H 0.185 0.815
35 H 0.244 0.756
36 H 0.255 0.745
37 H 0.079 0.921
38 H 0.089 0.911
39 H 0.065 0.935
40 H 0.096 0.904
41 H 0.033 0.967
42 H 0.063 0.937
43 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -3.065 9.302 -18.229 20.693
hybrid contribution 0.083 0.022 -2.004 2.006
sum -2.981 9.324 -20.233 22.477
Atomic orbital electron populations
1.21717 0.94451 1.01058 1.01183 1.20715 0.94369 0.93429 0.85590
0.94541 1.21386 0.95275 0.95660 0.83595 0.91923 1.45782 1.69699
1.12400 1.07310 1.17354 0.76637 0.86352 0.82419 1.90820 1.52017
1.15660 1.85665 1.24818 1.14679 0.99268 0.97971 1.20677 0.97440
1.02494 0.89685 1.20652 0.97412 0.90099 1.02008 1.24951 1.14704
0.98676 0.98793 1.17110 0.76035 0.82989 0.85926 1.43546 1.71848
1.08826 1.14975 1.90868 1.52093 1.85265 1.16595 1.83558 1.61462
1.01017 1.00970 1.21706 0.94917 1.00697 0.97632 1.21996 1.00637
0.98718 0.95074 1.20969 0.83913 0.96255 0.96059 1.44336 1.02769
1.66499 1.19607 1.20154 0.96470 1.42218 0.88601 0.92412 1.27002
1.00653 1.01552 0.97753 1.70868 1.27756 1.22489 1.37598 0.82875
0.75116 0.74440 0.73886 1.21554 1.19916 1.22188 0.93352 0.90626
0.94229 0.75564 0.82147 0.81515 0.75594 0.74524 0.92108 0.91063
0.93468 0.90400 0.96737 0.93690 0.93283
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.41 7.83 71.98 0.56 -3.84 16
2 C 0.17 6.16 3.03 44.97 0.14 6.30 16
3 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16
4 C 0.15 4.87 1.99 45.07 0.09 4.96 16
5 H 0.06 2.49 7.58 -2.38 -0.02 2.47 16
6 N -0.70 -17.85 4.58 -445.69 -2.04 -19.89 16
7 C 0.59 15.95 7.77 86.59 0.67 16.62 16
8 O -0.56 -19.90 16.48 -4.11 -0.07 -19.97 16
9 C -0.25 -4.96 6.46 24.24 0.16 -4.81 16
10 C -0.07 -1.30 9.88 21.55 0.21 -1.09 16
11 C -0.07 -1.14 9.88 21.55 0.21 -0.92 16
12 C -0.25 -3.86 6.46 24.24 0.16 -3.70 16
13 C 0.60 9.69 8.07 86.59 0.70 10.39 16
14 N -0.83 -6.40 8.87 -176.07 -1.56 -7.96 16
15 O -0.57 -13.80 17.65 -4.13 -0.07 -13.87 16
16 S 0.26 3.26 21.40 -56.49 -1.21 2.05 16
17 C -0.11 -3.57 5.46 30.62 0.17 -3.40 16
18 C -0.12 -4.57 6.10 30.82 0.19 -4.38 16
19 C 0.15 6.93 4.71 86.51 0.41 7.34 16
20 N -0.61 -28.53 2.83 -674.41 -1.91 -30.44 16
21 C -0.34 -18.23 8.48 84.03 0.71 -17.52 16
22 H 0.06 3.06 6.30 -2.91 -0.02 3.04 16
23 C -0.07 -4.00 4.69 84.86 0.40 -3.61 16
24 N -0.94 -55.71 12.51 21.65 0.27 -55.44 16
25 Si 1.11 50.25 29.98 68.60 2.06 52.31 16
26 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16
27 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16
28 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16
29 H 0.05 1.84 7.62 -2.39 -0.02 1.82 16
30 H 0.07 2.01 7.80 -2.39 -0.02 1.99 16
31 H 0.04 1.50 7.44 -2.39 -0.02 1.48 16
32 H 0.41 7.93 7.71 -92.71 -0.71 7.21 16
33 H 0.16 2.96 8.04 -2.91 -0.02 2.94 16
34 H 0.17 2.49 8.04 -2.91 -0.02 2.47 16
35 H 0.41 1.26 7.93 -92.71 -0.74 0.52 16
36 H 0.42 1.99 8.93 -92.70 -0.83 1.16 16
37 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16
38 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16
39 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16
40 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16
41 H 0.01 0.66 7.84 -2.39 -0.02 0.65 16
42 H 0.04 2.33 6.41 -2.39 -0.02 2.32 16
43 H 0.26 15.27 6.63 -92.71 -0.62 14.66 16
Total: -1.00 -73.40 365.42 -0.80 -74.20
By element:
Atomic # 1 Polarization: 17.73 SS G_CDS: -1.04 Total: 16.69 kcal
Atomic # 6 Polarization: -2.44 SS G_CDS: 4.77 Total: 2.33 kcal
Atomic # 7 Polarization: -108.50 SS G_CDS: -5.24 Total: -113.74 kcal
Atomic # 8 Polarization: -33.70 SS G_CDS: -0.14 Total: -33.84 kcal
Atomic # 14 Polarization: 50.25 SS G_CDS: 2.06 Total: 52.31 kcal
Atomic # 16 Polarization: 3.26 SS G_CDS: -1.21 Total: 2.05 kcal
Total: -73.40 -0.80 -74.20 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000993974572.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.743 kcal
(2) G-P(sol) polarization free energy of solvation -73.403 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.660 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.798 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.201 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.458 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds