Wall clock time and date at job start Tue Mar 31 2020 20:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.58482 * 2 1 4 4 C 1.53193 * 109.58786 * 239.57297 * 2 1 3 5 5 H 1.09004 * 109.49526 * 305.52973 * 4 2 1 6 6 N 1.46501 * 109.49698 * 65.59055 * 4 2 1 7 7 C 1.34776 * 119.99924 * 205.00189 * 6 4 2 8 8 O 1.21626 * 120.00012 * 359.97438 * 7 6 4 9 9 C 1.47167 * 120.00022 * 179.97438 * 7 6 4 10 10 C 1.36620 * 125.16255 * 179.71512 * 9 7 6 11 11 C 1.36795 * 114.74318 * 179.85626 * 10 9 7 12 12 C 1.36619 * 114.74728 * 0.43351 * 11 10 9 13 13 C 1.47163 * 125.16241 * 179.76350 * 12 11 10 14 14 N 1.34772 * 120.00240 * 180.02562 * 13 12 11 15 15 O 1.21632 * 120.00227 * 0.02562 * 13 12 11 16 16 S 1.75832 * 109.67375 * 359.76669 * 12 11 10 17 17 C 1.53034 * 109.31371 * 185.57647 * 4 2 1 18 18 C 1.53040 * 109.53964 * 61.36263 * 17 4 2 19 19 C 1.53622 * 109.24165 * 298.51558 * 18 17 4 20 20 N 1.46918 * 108.54790 * 54.85143 * 19 18 17 21 21 C 1.36936 * 120.63020 * 126.36407 * 20 19 18 22 22 H 1.08002 * 120.00338 * 209.43467 * 21 20 19 23 23 C 1.38811 * 119.99986 * 29.44092 * 21 20 19 24 24 N 1.31621 * 120.00133 * 24.34347 * 23 21 20 25 25 Si 1.86801 * 120.00159 * 204.34298 * 23 21 20 26 26 H 1.48504 * 109.46707 * 89.99987 * 25 23 21 27 27 H 1.48498 * 109.47082 * 330.00336 * 25 23 21 28 28 H 1.48496 * 109.47095 * 209.99844 * 25 23 21 29 29 H 1.08996 * 109.47424 * 299.71485 * 1 2 3 30 30 H 1.08996 * 109.47355 * 59.72159 * 1 2 3 31 31 H 1.09001 * 109.46757 * 179.72051 * 1 2 3 32 32 H 0.96998 * 120.00228 * 24.99972 * 6 4 2 33 33 H 1.07998 * 122.62559 * 0.03672 * 10 9 7 34 34 H 1.08001 * 122.62537 * 180.18094 * 11 10 9 35 35 H 0.97002 * 119.99778 * 0.02562 * 14 13 12 36 36 H 0.97006 * 120.00421 * 179.97438 * 14 13 12 37 37 H 1.08996 * 109.46160 * 181.38940 * 17 4 2 38 38 H 1.09007 * 109.46201 * 301.34634 * 17 4 2 39 39 H 1.08995 * 109.49842 * 58.58704 * 18 17 4 40 40 H 1.09004 * 109.49995 * 178.68413 * 18 17 4 41 41 H 1.09002 * 109.73892 * 295.11263 * 19 18 17 42 42 H 1.09002 * 109.66407 * 174.55465 * 19 18 17 43 43 H 0.97001 * 119.99789 * 4.04228 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7309 -1.2445 5 1 1.6030 -1.7269 -1.2891 6 7 1.6698 0.0232 -2.4436 7 6 1.5464 -0.6102 -3.6268 8 8 1.7458 -1.8078 -3.6992 9 6 1.1704 0.1473 -4.8312 10 6 1.0215 -0.3847 -6.0807 11 6 0.6632 0.5147 -7.0471 12 6 0.5217 1.8005 -6.6074 13 6 0.1491 2.9481 -7.4499 14 7 0.0393 4.1762 -6.9057 15 8 -0.0596 2.7884 -8.6375 16 16 0.8523 1.8759 -4.8821 17 6 3.5675 -0.8494 -1.1691 18 6 3.9569 -1.6655 0.0656 19 6 3.4656 -0.9402 1.3275 20 7 2.0226 -0.6980 1.1954 21 6 1.1538 -1.1099 2.1704 22 1 0.1391 -1.3753 1.9126 23 6 1.5772 -1.1865 3.4901 24 7 2.5878 -0.4499 3.9008 25 14 0.7128 -2.3348 4.6833 26 1 1.3718 -3.6653 4.6550 27 1 -0.7112 -2.4792 4.2876 28 1 0.7908 -1.7728 6.0556 29 1 -0.3634 0.5094 0.8925 30 1 -0.3634 0.5181 -0.8874 31 1 -0.3633 -1.0277 -0.0050 32 1 1.5111 0.9784 -2.3859 33 1 1.1718 -1.4338 -6.2886 34 1 0.5085 0.2314 -8.0777 35 1 0.2061 4.3037 -5.9587 36 1 -0.2059 4.9327 -7.4611 37 1 3.9378 -1.3473 -2.0652 38 1 4.0061 0.1461 -1.0995 39 1 3.4984 -2.6527 0.0086 40 1 5.0413 -1.7693 0.1059 41 1 3.9877 0.0109 1.4323 42 1 3.6533 -1.5608 2.2038 43 1 2.9989 0.1890 3.2977 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993974572.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:05 Heat of formation + Delta-G solvation = -49.458102 kcal Electronic energy + Delta-G solvation = -26645.834367 eV Core-core repulsion = 22816.844266 eV Total energy + Delta-G solvation = -3828.990100 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.30606 -40.69347 -39.54070 -38.09035 -36.17960 -34.90444 -34.40988 -33.54295 -31.61819 -30.45375 -28.07361 -27.06504 -26.52806 -24.05364 -22.91274 -22.60787 -22.24154 -21.31006 -20.32701 -19.89097 -18.90699 -18.17503 -17.86458 -17.21874 -16.72652 -16.44668 -16.29737 -16.09056 -15.99733 -15.68184 -15.46901 -15.14211 -14.98372 -14.93618 -14.38379 -14.19061 -13.76894 -13.52646 -13.41229 -13.05413 -12.98806 -12.76624 -12.58439 -12.33385 -12.07971 -11.95568 -11.90448 -11.83452 -11.72927 -11.55917 -11.31364 -11.04455 -10.90695 -10.48601 -10.28693 -9.98988 -9.74631 -8.89622 -8.20194 -5.36812 -1.10477 0.11220 0.47004 0.90654 1.60211 1.66386 1.82959 1.86130 1.86799 2.06913 2.30743 2.67072 3.25132 3.42507 3.59337 3.77240 3.81462 3.92076 4.01410 4.07344 4.21471 4.22162 4.35229 4.50024 4.64344 4.69331 4.80532 4.81656 4.87931 4.92555 5.01068 5.05872 5.11297 5.13168 5.26030 5.28479 5.36706 5.51812 5.70769 5.94756 6.15663 6.30852 6.45548 6.96073 7.06198 7.09109 7.80819 8.24405 9.06559 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.023242 B = 0.002523 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.439294 B =11095.650407 C =11474.874190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.166 3.834 3 H 0.037 0.963 4 C 0.147 3.853 5 H 0.063 0.937 6 N -0.701 5.701 7 C 0.586 3.414 8 O -0.562 6.562 9 C -0.245 4.245 10 C -0.069 4.069 11 C -0.068 4.068 12 C -0.249 4.249 13 C 0.596 3.404 14 N -0.827 5.827 15 O -0.568 6.568 16 S 0.261 5.739 17 C -0.111 4.111 18 C -0.125 4.125 19 C 0.154 3.846 20 N -0.607 5.607 21 C -0.345 4.345 22 H 0.058 0.942 23 C -0.073 4.073 24 N -0.945 5.945 25 Si 1.111 2.889 26 H -0.289 1.289 27 H -0.274 1.274 28 H -0.295 1.295 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.039 0.961 32 H 0.408 0.592 33 H 0.161 0.839 34 H 0.167 0.833 35 H 0.413 0.587 36 H 0.421 0.579 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.046 0.954 40 H 0.077 0.923 41 H 0.015 0.985 42 H 0.045 0.955 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.083 9.763 -20.182 22.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.059 3.941 3 H 0.055 0.945 4 C 0.041 3.959 5 H 0.081 0.919 6 N -0.352 5.352 7 C 0.372 3.628 8 O -0.442 6.442 9 C -0.367 4.367 10 C -0.103 4.103 11 C -0.102 4.102 12 C -0.371 4.371 13 C 0.379 3.621 14 N -0.392 5.392 15 O -0.448 6.448 16 S 0.530 5.470 17 C -0.150 4.150 18 C -0.164 4.164 19 C 0.028 3.972 20 N -0.332 5.332 21 C -0.474 4.474 22 H 0.076 0.924 23 C -0.270 4.270 24 N -0.587 5.587 25 Si 0.937 3.063 26 H -0.216 1.216 27 H -0.199 1.199 28 H -0.222 1.222 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.244 0.756 33 H 0.179 0.821 34 H 0.185 0.815 35 H 0.244 0.756 36 H 0.255 0.745 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.065 0.935 40 H 0.096 0.904 41 H 0.033 0.967 42 H 0.063 0.937 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.065 9.302 -18.229 20.693 hybrid contribution 0.083 0.022 -2.004 2.006 sum -2.981 9.324 -20.233 22.477 Atomic orbital electron populations 1.21717 0.94451 1.01058 1.01183 1.20715 0.94369 0.93429 0.85590 0.94541 1.21386 0.95275 0.95660 0.83595 0.91923 1.45782 1.69699 1.12400 1.07310 1.17354 0.76637 0.86352 0.82419 1.90820 1.52017 1.15660 1.85665 1.24818 1.14679 0.99268 0.97971 1.20677 0.97440 1.02494 0.89685 1.20652 0.97412 0.90099 1.02008 1.24951 1.14704 0.98676 0.98793 1.17110 0.76035 0.82989 0.85926 1.43546 1.71848 1.08826 1.14975 1.90868 1.52093 1.85265 1.16595 1.83558 1.61462 1.01017 1.00970 1.21706 0.94917 1.00697 0.97632 1.21996 1.00637 0.98718 0.95074 1.20969 0.83913 0.96255 0.96059 1.44336 1.02769 1.66499 1.19607 1.20154 0.96470 1.42218 0.88601 0.92412 1.27002 1.00653 1.01552 0.97753 1.70868 1.27756 1.22489 1.37598 0.82875 0.75116 0.74440 0.73886 1.21554 1.19916 1.22188 0.93352 0.90626 0.94229 0.75564 0.82147 0.81515 0.75594 0.74524 0.92108 0.91063 0.93468 0.90400 0.96737 0.93690 0.93283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.41 7.83 71.98 0.56 -3.84 16 2 C 0.17 6.16 3.03 44.97 0.14 6.30 16 3 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 4 C 0.15 4.87 1.99 45.07 0.09 4.96 16 5 H 0.06 2.49 7.58 -2.38 -0.02 2.47 16 6 N -0.70 -17.85 4.58 -445.69 -2.04 -19.89 16 7 C 0.59 15.95 7.77 86.59 0.67 16.62 16 8 O -0.56 -19.90 16.48 -4.11 -0.07 -19.97 16 9 C -0.25 -4.96 6.46 24.24 0.16 -4.81 16 10 C -0.07 -1.30 9.88 21.55 0.21 -1.09 16 11 C -0.07 -1.14 9.88 21.55 0.21 -0.92 16 12 C -0.25 -3.86 6.46 24.24 0.16 -3.70 16 13 C 0.60 9.69 8.07 86.59 0.70 10.39 16 14 N -0.83 -6.40 8.87 -176.07 -1.56 -7.96 16 15 O -0.57 -13.80 17.65 -4.13 -0.07 -13.87 16 16 S 0.26 3.26 21.40 -56.49 -1.21 2.05 16 17 C -0.11 -3.57 5.46 30.62 0.17 -3.40 16 18 C -0.12 -4.57 6.10 30.82 0.19 -4.38 16 19 C 0.15 6.93 4.71 86.51 0.41 7.34 16 20 N -0.61 -28.53 2.83 -674.41 -1.91 -30.44 16 21 C -0.34 -18.23 8.48 84.03 0.71 -17.52 16 22 H 0.06 3.06 6.30 -2.91 -0.02 3.04 16 23 C -0.07 -4.00 4.69 84.86 0.40 -3.61 16 24 N -0.94 -55.71 12.51 21.65 0.27 -55.44 16 25 Si 1.11 50.25 29.98 68.60 2.06 52.31 16 26 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 28 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 29 H 0.05 1.84 7.62 -2.39 -0.02 1.82 16 30 H 0.07 2.01 7.80 -2.39 -0.02 1.99 16 31 H 0.04 1.50 7.44 -2.39 -0.02 1.48 16 32 H 0.41 7.93 7.71 -92.71 -0.71 7.21 16 33 H 0.16 2.96 8.04 -2.91 -0.02 2.94 16 34 H 0.17 2.49 8.04 -2.91 -0.02 2.47 16 35 H 0.41 1.26 7.93 -92.71 -0.74 0.52 16 36 H 0.42 1.99 8.93 -92.70 -0.83 1.16 16 37 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 39 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 41 H 0.01 0.66 7.84 -2.39 -0.02 0.65 16 42 H 0.04 2.33 6.41 -2.39 -0.02 2.32 16 43 H 0.26 15.27 6.63 -92.71 -0.62 14.66 16 Total: -1.00 -73.40 365.42 -0.80 -74.20 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -1.04 Total: 16.69 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 4.77 Total: 2.33 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -5.24 Total: -113.74 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -0.14 Total: -33.84 kcal Atomic # 14 Polarization: 50.25 SS G_CDS: 2.06 Total: 52.31 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.21 Total: 2.05 kcal Total: -73.40 -0.80 -74.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993974572.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.743 kcal (2) G-P(sol) polarization free energy of solvation -73.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds