Wall clock time and date at job start Tue Mar 31 2020 20:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.69847 * 2 1 4 4 C 1.53192 * 109.58667 * 239.65175 * 2 1 3 5 5 H 1.08999 * 109.52513 * 65.60780 * 4 2 1 6 6 N 1.46498 * 109.49722 * 305.52486 * 4 2 1 7 7 C 1.34779 * 120.00086 * 155.16077 * 6 4 2 8 8 O 1.21681 * 119.99834 * 0.02562 * 7 6 4 9 9 C 1.46735 * 119.99993 * 180.02562 * 7 6 4 10 10 C 1.34870 * 125.05584 * 180.02562 * 9 7 6 11 11 C 1.38940 * 113.65511 * 179.97438 * 10 9 7 12 12 C 1.47337 * 122.96390 * 179.97438 * 11 10 9 13 13 N 1.34773 * 119.99969 * 180.02562 * 12 11 10 14 14 O 1.21616 * 119.99601 * 359.97438 * 12 11 10 15 15 C 1.36668 * 114.07447 * 359.97438 * 11 10 9 16 16 S 1.70600 * 110.53070 * 359.72898 * 15 11 10 17 17 C 1.53043 * 109.31320 * 185.57469 * 4 2 1 18 18 C 1.53036 * 109.52385 * 61.36806 * 17 4 2 19 19 C 1.53193 * 109.31821 * 298.61544 * 18 17 4 20 20 N 1.46921 * 109.58977 * 120.35811 * 2 1 3 21 21 C 1.36939 * 120.63029 * 353.37578 * 20 2 1 22 22 H 1.08007 * 120.00024 * 29.04539 * 21 20 2 23 23 C 1.38809 * 120.00052 * 209.04763 * 21 20 2 24 24 N 1.31618 * 120.00290 * 15.06168 * 23 21 20 25 25 Si 1.86802 * 120.00128 * 195.05654 * 23 21 20 26 26 H 1.48501 * 109.46973 * 89.99972 * 25 23 21 27 27 H 1.48494 * 109.47222 * 210.00108 * 25 23 21 28 28 H 1.48497 * 109.47200 * 330.00246 * 25 23 21 29 29 H 1.08998 * 109.47088 * 180.35176 * 1 2 3 30 30 H 1.09004 * 109.47072 * 300.35032 * 1 2 3 31 31 H 1.09002 * 109.47405 * 60.34940 * 1 2 3 32 32 H 0.97001 * 119.99880 * 335.16473 * 6 4 2 33 33 H 1.07993 * 123.17222 * 0.02562 * 10 9 7 34 34 H 0.97004 * 120.00157 * 359.97438 * 13 12 11 35 35 H 0.97003 * 119.99819 * 179.97438 * 13 12 11 36 36 H 1.07994 * 124.73079 * 179.97438 * 15 11 10 37 37 H 1.08992 * 109.46127 * 181.38453 * 17 4 2 38 38 H 1.08997 * 109.45595 * 301.35779 * 17 4 2 39 39 H 1.08999 * 109.49922 * 58.58561 * 18 17 4 40 40 H 1.09006 * 109.49665 * 178.67755 * 18 17 4 41 41 H 1.09002 * 109.59554 * 294.87104 * 19 18 17 42 42 H 1.08997 * 109.70687 * 174.50797 * 19 18 17 43 43 H 0.96998 * 120.00359 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7292 -1.2455 5 1 1.7660 -0.1671 -2.1372 6 7 1.4515 -2.0678 -1.3073 7 6 1.3314 -2.6975 -2.4929 8 8 1.7152 -2.1543 -3.5119 9 6 0.7378 -4.0380 -2.5548 10 6 0.5692 -4.7592 -3.6820 11 6 -0.0172 -6.0003 -3.4671 12 6 -0.2963 -6.9542 -4.5549 13 7 -0.8682 -8.1429 -4.2785 14 8 -0.0114 -6.6684 -5.7021 15 6 -0.3124 -6.2584 -2.1579 16 16 0.1496 -4.9461 -1.1706 17 6 3.5675 -0.8478 -1.1703 18 6 3.9566 -1.6657 0.0632 19 6 3.4651 -0.9469 1.3236 20 7 2.0226 -0.6996 1.1944 21 6 1.1538 -1.1128 2.1689 22 1 0.1360 -1.3675 1.9124 23 6 1.5812 -1.2043 3.4864 24 7 2.7039 -0.6252 3.8558 25 14 0.5629 -2.1493 4.7351 26 1 0.9981 -3.5690 4.7561 27 1 0.7532 -1.5533 6.0818 28 1 -0.8722 -2.0771 4.3601 29 1 -0.3633 -1.0276 0.0063 30 1 -0.3633 0.5193 0.8869 31 1 -0.3634 0.5084 -0.8931 32 1 1.1458 -2.5009 -0.4950 33 1 0.8631 -4.4057 -4.6592 34 1 -1.0957 -8.3706 -3.3634 35 1 -1.0522 -8.7707 -4.9947 36 1 -0.7703 -7.1679 -1.7981 37 1 3.9378 -1.3445 -2.0670 38 1 4.0060 0.1476 -1.0991 39 1 3.4979 -2.6528 0.0048 40 1 5.0410 -1.7698 0.1035 41 1 3.9903 0.0021 1.4316 42 1 3.6521 -1.5697 2.1984 43 1 3.0023 -0.6888 4.7766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994487903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:13 Heat of formation + Delta-G solvation = -23.677572 kcal Electronic energy + Delta-G solvation = -27372.918439 eV Core-core repulsion = 23545.046266 eV Total energy + Delta-G solvation = -3827.872173 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.20378 -39.68444 -37.85475 -36.75163 -34.05681 -33.99924 -32.50455 -31.81639 -30.30658 -29.15420 -26.40790 -25.69638 -25.07749 -23.59232 -21.85256 -20.88869 -20.46964 -19.34546 -18.91170 -18.68233 -17.30724 -17.18959 -16.49389 -15.68998 -15.45242 -15.21361 -15.01264 -14.80995 -14.53730 -13.98449 -13.73817 -13.62024 -13.35603 -13.14109 -13.02966 -12.84692 -12.73626 -12.57211 -11.90179 -11.37704 -11.33033 -11.29175 -11.02526 -10.77657 -10.67437 -10.56998 -10.32012 -10.16093 -10.06640 -10.03831 -9.82677 -9.70406 -9.36865 -9.18684 -8.85825 -8.62211 -8.51728 -6.74660 -5.87021 -3.32929 0.19648 1.19554 1.53484 1.58366 3.02991 3.16502 3.28860 3.35721 3.38115 3.39296 3.50292 4.38856 4.51252 4.72444 4.94356 5.00713 5.25440 5.27048 5.51669 5.53849 5.55086 5.70276 5.84793 5.91870 6.00888 6.06019 6.17070 6.28548 6.36876 6.44181 6.49020 6.59943 6.63456 6.73040 6.89109 6.89727 6.98166 7.01621 7.33437 7.62322 7.71585 7.84535 7.95291 8.35621 8.43453 9.11875 9.74716 10.31835 11.20722 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.003666 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.010515 B = 7636.400427 C = 8887.863501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.159 3.841 3 H 0.042 0.958 4 C 0.134 3.866 5 H 0.080 0.920 6 N -0.695 5.695 7 C 0.582 3.418 8 O -0.537 6.537 9 C -0.261 4.261 10 C -0.021 4.021 11 C -0.166 4.166 12 C 0.584 3.416 13 N -0.851 5.851 14 O -0.536 6.536 15 C -0.215 4.215 16 S 0.272 5.728 17 C -0.122 4.122 18 C -0.141 4.141 19 C 0.170 3.830 20 N -0.587 5.587 21 C -0.258 4.258 22 H 0.071 0.929 23 C 0.007 3.993 24 N -0.899 5.899 25 Si 0.898 3.102 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.278 1.278 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.040 0.960 32 H 0.406 0.594 33 H 0.162 0.838 34 H 0.400 0.600 35 H 0.405 0.595 36 H 0.175 0.825 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.048 0.952 41 H 0.018 0.982 42 H 0.089 0.911 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.057 -11.945 -8.768 16.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.051 3.949 3 H 0.060 0.940 4 C 0.028 3.972 5 H 0.098 0.902 6 N -0.345 5.345 7 C 0.367 3.633 8 O -0.416 6.416 9 C -0.381 4.381 10 C -0.052 4.052 11 C -0.184 4.184 12 C 0.369 3.631 13 N -0.415 5.415 14 O -0.414 6.414 15 C -0.355 4.355 16 S 0.541 5.459 17 C -0.161 4.161 18 C -0.180 4.180 19 C 0.045 3.955 20 N -0.311 5.311 21 C -0.387 4.387 22 H 0.089 0.911 23 C -0.192 4.192 24 N -0.543 5.543 25 Si 0.728 3.272 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.204 1.204 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.242 0.758 33 H 0.180 0.820 34 H 0.229 0.771 35 H 0.236 0.764 36 H 0.192 0.808 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.037 0.963 42 H 0.107 0.893 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.534 -10.845 -8.362 14.770 hybrid contribution -0.717 -1.542 -0.130 1.706 sum -6.251 -12.387 -8.492 16.268 Atomic orbital electron populations 1.21795 0.95600 1.01404 1.00622 1.20734 0.93377 0.94031 0.86725 0.94014 1.21627 0.93066 0.82353 1.00150 0.90233 1.45903 1.61395 1.18954 1.08266 1.16948 0.78723 0.83247 0.84382 1.90803 1.50339 1.66183 1.34317 1.24420 1.14194 1.01623 0.97899 1.20276 0.94210 0.90874 0.99823 1.18993 1.09119 0.97434 0.92882 1.17640 0.76466 0.81283 0.87749 1.43668 1.65527 1.19006 1.13334 1.90855 1.52205 1.76825 1.21492 1.26153 1.05890 1.05706 0.97720 1.83581 1.50905 1.04368 1.07029 1.21784 0.95250 1.00659 0.98376 1.22148 0.99060 0.99471 0.97312 1.20831 0.83060 0.97285 0.94363 1.44186 1.03186 1.64874 1.18814 1.19166 0.94840 1.38414 0.86329 0.91132 1.25090 0.97694 0.99475 0.96945 1.70012 1.23247 1.44067 1.16940 0.86358 0.79894 0.79797 0.81122 1.21401 1.21794 1.20369 0.92935 0.91635 0.94050 0.75762 0.82009 0.77141 0.76357 0.80807 0.92967 0.91679 0.92988 0.93328 0.96340 0.89333 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 7.72 37.16 0.29 -2.09 16 2 C 0.16 3.02 3.20 -67.60 -0.22 2.80 16 3 H 0.04 0.83 8.14 -51.92 -0.42 0.41 16 4 C 0.13 2.34 2.32 -67.81 -0.16 2.18 16 5 H 0.08 1.39 7.58 -51.93 -0.39 1.00 16 6 N -0.69 -11.52 3.46 -54.98 -0.19 -11.71 16 7 C 0.58 9.78 7.75 -12.83 -0.10 9.68 16 8 O -0.54 -10.54 16.46 5.21 0.09 -10.46 16 9 C -0.26 -3.66 6.37 -37.35 -0.24 -3.89 16 10 C -0.02 -0.29 9.47 -40.52 -0.38 -0.67 16 11 C -0.17 -1.86 5.82 -106.50 -0.62 -2.48 16 12 C 0.58 6.60 8.06 -12.56 -0.10 6.50 16 13 N -0.85 -5.40 8.84 30.41 0.27 -5.14 16 14 O -0.54 -8.33 17.52 5.26 0.09 -8.24 16 15 C -0.21 -1.83 10.41 30.16 0.31 -1.51 16 16 S 0.27 2.90 22.09 -107.50 -2.37 0.53 16 17 C -0.12 -2.12 5.58 -26.69 -0.15 -2.27 16 18 C -0.14 -2.60 5.93 -26.61 -0.16 -2.75 16 19 C 0.17 3.75 5.29 -3.71 -0.02 3.73 16 20 N -0.59 -12.98 2.65 -164.78 -0.44 -13.42 16 21 C -0.26 -6.20 8.61 -15.06 -0.13 -6.33 16 22 H 0.07 1.64 6.20 -52.48 -0.33 1.31 16 23 C 0.01 0.19 4.96 -17.43 -0.09 0.10 16 24 N -0.90 -24.34 11.14 55.49 0.62 -23.72 16 25 Si 0.90 19.95 29.58 -169.99 -5.03 14.92 16 26 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 29 H 0.05 0.90 6.37 -51.93 -0.33 0.57 16 30 H 0.06 1.22 7.66 -51.93 -0.40 0.83 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.41 6.74 6.84 -40.82 -0.28 6.46 16 33 H 0.16 2.42 7.95 -52.49 -0.42 2.01 16 34 H 0.40 1.32 7.29 -40.82 -0.30 1.03 16 35 H 0.41 2.03 8.93 -40.82 -0.36 1.66 16 36 H 0.17 0.76 6.98 -52.49 -0.37 0.39 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.05 0.97 7.53 -51.93 -0.39 0.58 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.09 2.20 6.06 -51.93 -0.31 1.88 16 43 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 361.10 15.07 5.44 5.44 Total: -1.00 -31.51 361.10 -8.83 -40.34 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -5.55 Total: 8.47 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -1.76 Total: 2.98 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.26 Total: -53.98 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.18 Total: -18.69 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.92 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -2.37 Total: 0.53 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.51 -8.83 -40.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994487903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.661 kcal (2) G-P(sol) polarization free energy of solvation -31.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds