Wall clock time and date at job start Tue Mar 31 2020 20:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42905 * 113.99602 * 2 1 4 4 H 1.09000 * 109.47167 * 29.99584 * 3 2 1 5 5 C 1.52997 * 109.46942 * 269.99535 * 3 2 1 6 6 C 1.50699 * 109.46875 * 150.00093 * 3 2 1 7 7 N 1.28647 * 124.71618 * 224.99678 * 6 3 2 8 8 C 1.33561 * 115.76622 * 179.97438 * 7 6 3 9 9 C 1.47265 * 123.14243 * 180.02562 * 8 7 6 10 10 O 1.21630 * 120.00032 * 179.97438 * 9 8 7 11 11 N 1.34775 * 119.99842 * 359.97438 * 9 8 7 12 12 C 1.47859 * 126.94990 * 0.02562 * 11 9 8 13 13 C 1.55482 * 105.17781 * 181.92262 * 12 11 9 14 14 H 1.08997 * 116.03733 * 159.74881 * 13 12 11 15 15 C 1.57437 * 99.67994 * 32.85900 * 13 12 11 16 16 C 1.49294 * 126.94226 * 179.97438 * 11 9 8 17 17 H 1.09003 * 116.15309 * 15.84554 * 16 11 9 18 18 C 1.56021 * 104.09557 * 246.69663 * 16 11 9 19 19 N 1.47864 * 105.10416 * 288.77087 * 18 16 11 20 20 C 1.36938 * 126.94685 * 181.97612 * 19 18 16 21 21 H 1.07999 * 120.00325 * 180.02562 * 20 19 18 22 22 C 1.38815 * 119.99817 * 0.02779 * 20 19 18 23 23 N 1.31621 * 119.99673 * 359.71804 * 22 20 19 24 24 Si 1.86795 * 120.00115 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47274 * 89.99913 * 24 22 20 26 26 H 1.48505 * 109.47015 * 209.99478 * 24 22 20 27 27 H 1.48498 * 109.47362 * 329.99904 * 24 22 20 28 28 C 1.35204 * 113.71741 * 0.26328 * 8 7 6 29 29 S 1.70768 * 124.72426 * 44.95399 * 6 3 2 30 30 H 1.08997 * 109.46915 * 60.00650 * 1 2 3 31 31 H 1.08998 * 109.46876 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47493 * 300.00368 * 1 2 3 33 33 H 1.09000 * 109.47714 * 300.00828 * 5 3 2 34 34 H 1.09008 * 109.46998 * 60.00268 * 5 3 2 35 35 H 1.08994 * 109.47354 * 179.97438 * 5 3 2 36 36 H 1.09003 * 110.31362 * 300.91355 * 12 11 9 37 37 H 1.09008 * 110.31865 * 62.98849 * 12 11 9 38 38 H 1.09001 * 112.52781 * 191.70719 * 15 13 12 39 39 H 1.09000 * 112.31808 * 64.17222 * 15 13 12 40 40 H 1.08995 * 110.31611 * 169.85983 * 18 16 11 41 41 H 1.09002 * 110.30947 * 47.67196 * 18 16 11 42 42 H 0.97000 * 120.00043 * 180.02562 * 23 22 20 43 43 H 1.07998 * 125.58867 * 179.73572 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3386 1.2640 0.7104 7 7 3.7324 2.1277 1.5787 8 6 4.9447 1.9173 2.0983 9 6 5.5542 2.8032 3.1045 10 8 6.6629 2.5569 3.5398 11 7 4.8835 3.8869 3.5429 12 6 3.5367 4.3289 3.1222 13 6 3.2800 5.6498 3.9011 14 1 2.5125 6.3060 3.4906 15 6 4.7498 6.2105 3.9633 16 6 5.3497 4.8830 4.5525 17 1 6.4162 4.8753 4.7780 18 6 4.3870 4.6764 5.7628 19 7 3.0842 5.2133 5.3148 20 6 1.9295 5.2890 6.0470 21 1 1.0360 5.7045 5.6049 22 6 1.9074 4.8318 7.3574 23 7 2.9948 4.3204 7.8944 24 14 0.3324 4.9357 8.3565 25 1 -0.4547 3.6902 8.1708 26 1 0.6680 5.0995 9.7938 27 1 -0.4680 6.0999 7.8992 28 6 5.5622 0.8179 1.6104 29 16 4.5301 0.0634 0.4756 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.8829 1.0775 -1.9564 34 1 1.2568 1.8014 -1.9564 35 1 2.6605 2.7673 -1.4426 36 1 3.5171 4.5124 2.0479 37 1 2.7914 3.5803 3.3911 38 1 4.8476 7.0507 4.6507 39 1 5.1464 6.4426 2.9749 40 1 4.7461 5.2296 6.6306 41 1 4.2983 3.6160 5.9990 42 1 2.9793 4.0005 8.8100 43 1 6.5454 0.4718 1.8931 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032402853.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:02 Heat of formation + Delta-G solvation = 34.255362 kcal Electronic energy + Delta-G solvation = -27569.413984 eV Core-core repulsion = 23744.053972 eV Total energy + Delta-G solvation = -3825.360012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.54386 -39.45696 -38.41968 -37.39241 -33.57206 -32.70292 -31.46556 -29.74083 -29.04698 -28.49002 -27.14635 -25.77520 -25.14412 -24.08410 -22.86803 -21.09574 -20.08623 -19.73602 -19.04170 -18.10660 -16.81023 -16.59952 -16.41838 -15.86125 -15.73946 -15.52299 -15.13291 -14.74288 -14.11693 -14.03359 -13.76584 -13.31794 -13.19120 -13.05469 -12.93306 -12.58614 -12.28609 -11.97455 -11.89892 -11.76036 -11.56952 -11.34166 -11.24997 -10.97461 -10.83599 -10.74454 -10.56081 -10.24441 -10.15430 -10.04740 -9.76749 -9.67654 -9.63785 -9.56270 -8.93769 -8.67031 -7.92188 -6.87374 -5.73123 -3.06974 0.50767 1.20440 1.63054 2.07311 3.12072 3.38832 3.43284 3.46013 3.48152 3.67762 4.14450 4.45273 4.61144 4.78300 4.86275 5.02229 5.05304 5.15011 5.20978 5.28318 5.29674 5.36389 5.41034 5.43880 5.45135 5.62159 5.69308 5.78469 5.80407 5.82753 6.16139 6.30682 6.38545 6.49127 6.61184 6.66702 6.73914 6.84012 7.41870 7.46487 7.54615 7.74844 8.09382 8.14535 8.55911 9.13936 9.75010 10.44852 11.39242 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.011370 B = 0.003914 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.995511 B = 7152.571494 C = 8470.210284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.164 3.836 4 H 0.095 0.905 5 C -0.168 4.168 6 C 0.015 3.985 7 N -0.422 5.422 8 C 0.025 3.975 9 C 0.601 3.399 10 O -0.552 6.552 11 N -0.586 5.586 12 C 0.104 3.896 13 C 0.135 3.865 14 H 0.105 0.895 15 C -0.149 4.149 16 C 0.097 3.903 17 H 0.115 0.885 18 C 0.175 3.825 19 N -0.598 5.598 20 C -0.228 4.228 21 H 0.080 0.920 22 C -0.007 4.007 23 N -0.920 5.920 24 Si 0.912 3.088 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.281 1.281 28 C -0.234 4.234 29 S 0.232 5.768 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.046 0.954 42 H 0.253 0.747 43 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.769 -5.980 -20.155 21.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.103 3.897 4 H 0.113 0.887 5 C -0.226 4.226 6 C -0.264 4.264 7 N -0.138 5.138 8 C -0.110 4.110 9 C 0.387 3.613 10 O -0.432 6.432 11 N -0.317 5.317 12 C -0.021 4.021 13 C 0.027 3.973 14 H 0.123 0.877 15 C -0.189 4.189 16 C -0.006 4.006 17 H 0.133 0.867 18 C 0.050 3.950 19 N -0.322 5.322 20 C -0.356 4.356 21 H 0.098 0.902 22 C -0.203 4.203 23 N -0.567 5.567 24 Si 0.742 3.258 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.206 1.206 28 C -0.376 4.376 29 S 0.489 5.511 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -0.448 -6.839 -20.144 21.278 hybrid contribution -0.648 0.616 1.391 1.654 sum -1.096 -6.223 -18.753 19.789 Atomic orbital electron populations 1.22855 0.79788 1.03226 1.00580 1.87890 1.20664 1.26443 1.95119 1.20282 0.88482 0.86119 0.94861 0.88679 1.22284 1.03203 1.02440 0.94679 1.26779 1.01952 0.96724 1.00932 1.67059 1.12639 1.26666 1.07457 1.20450 0.91001 0.97674 1.01920 1.16619 0.84235 0.79838 0.80632 1.90771 1.19659 1.73170 1.59615 1.49006 1.18405 1.23686 1.40628 1.23152 0.82866 0.98616 0.97501 1.23242 0.94344 0.92552 0.87209 0.87712 1.24204 0.98054 0.96636 1.00020 1.24442 0.99386 0.86308 0.90423 0.86732 1.21912 0.83126 0.98815 0.91115 1.45217 1.08116 1.71424 1.07441 1.19043 0.87829 1.35281 0.93495 0.90204 1.24807 0.97423 1.00950 0.97157 1.69916 1.26366 1.46131 1.14289 0.86126 0.82408 0.77639 0.79602 1.21718 1.21694 1.20643 1.26692 1.07127 1.00136 1.03665 1.82741 1.05893 1.26864 1.35639 0.93623 0.89177 0.93278 0.91404 0.91082 0.90666 0.92356 0.90748 0.89705 0.91694 0.92506 0.93554 0.93641 0.79408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.33 16 2 O -0.38 -4.00 10.17 -35.23 -0.36 -4.36 16 3 C 0.16 1.71 3.23 -27.88 -0.09 1.62 16 4 H 0.10 1.01 7.79 -51.93 -0.40 0.60 16 5 C -0.17 -1.31 9.51 37.16 0.35 -0.96 16 6 C 0.02 0.20 6.30 -13.61 -0.09 0.12 16 7 N -0.42 -6.78 7.90 -8.51 -0.07 -6.85 16 8 C 0.02 0.43 6.63 -84.53 -0.56 -0.13 16 9 C 0.60 12.28 7.87 -12.59 -0.10 12.18 16 10 O -0.55 -12.37 17.06 5.25 0.09 -12.28 16 11 N -0.59 -11.86 2.95 -158.39 -0.47 -12.33 16 12 C 0.10 1.97 4.86 -1.98 -0.01 1.96 16 13 C 0.14 2.64 5.51 -62.67 -0.35 2.29 16 14 H 0.11 1.83 8.14 -51.93 -0.42 1.40 16 15 C -0.15 -2.64 6.83 -22.06 -0.15 -2.79 16 16 C 0.10 1.97 5.25 -62.51 -0.33 1.64 16 17 H 0.11 2.23 8.05 -51.93 -0.42 1.81 16 18 C 0.18 4.35 4.76 -1.68 -0.01 4.35 16 19 N -0.60 -14.81 3.02 -156.48 -0.47 -15.28 16 20 C -0.23 -6.20 10.37 -15.06 -0.16 -6.35 16 21 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 22 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 23 N -0.92 -27.31 10.56 55.49 0.59 -26.73 16 24 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 28 C -0.23 -3.33 10.62 29.65 0.31 -3.01 16 29 S 0.23 2.61 22.73 -107.50 -2.44 0.16 16 30 H 0.05 0.26 7.87 -51.93 -0.41 -0.14 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.39 8.08 -51.93 -0.42 -0.03 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.44 7.87 -51.92 -0.41 0.03 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.99 7.60 -51.93 -0.39 0.59 16 37 H 0.07 1.60 7.80 -51.92 -0.41 1.20 16 38 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.06 1.53 7.47 -51.93 -0.39 1.14 16 41 H 0.05 1.33 7.67 -51.93 -0.40 0.93 16 42 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.19 2.43 8.03 -52.49 -0.42 2.01 16 LS Contribution 366.53 15.07 5.52 5.52 Total: -1.00 -33.47 366.53 -8.95 -42.42 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.15 Total: 0.76 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: -0.17 Total: 11.95 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: -0.42 Total: -61.18 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.27 Total: -16.63 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -2.44 Total: 0.16 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.47 -8.95 -42.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032402853.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.671 kcal (2) G-P(sol) polarization free energy of solvation -33.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds