Wall clock time and date at job start Tue Mar 31 2020 20:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42905 * 113.99602 * 2 1 4 4 H 1.09000 * 109.47167 * 29.99584 * 3 2 1 5 5 C 1.52997 * 109.46942 * 269.99535 * 3 2 1 6 6 C 1.50699 * 109.46875 * 150.00093 * 3 2 1 7 7 N 1.28647 * 124.71618 * 224.99678 * 6 3 2 8 8 C 1.33561 * 115.76622 * 179.97438 * 7 6 3 9 9 C 1.47265 * 123.14243 * 180.02562 * 8 7 6 10 10 O 1.21630 * 120.00032 * 179.97438 * 9 8 7 11 11 N 1.34775 * 119.99842 * 359.97438 * 9 8 7 12 12 C 1.47859 * 126.94990 * 0.02562 * 11 9 8 13 13 C 1.55482 * 105.17781 * 181.92262 * 12 11 9 14 14 H 1.08997 * 116.03733 * 159.74881 * 13 12 11 15 15 C 1.57437 * 99.67994 * 32.85900 * 13 12 11 16 16 C 1.49294 * 126.94226 * 179.97438 * 11 9 8 17 17 H 1.09003 * 116.15309 * 15.84554 * 16 11 9 18 18 C 1.56021 * 104.09557 * 246.69663 * 16 11 9 19 19 N 1.47864 * 105.10416 * 288.77087 * 18 16 11 20 20 C 1.36938 * 126.94685 * 181.97612 * 19 18 16 21 21 H 1.07999 * 120.00325 * 180.02562 * 20 19 18 22 22 C 1.38815 * 119.99817 * 0.02779 * 20 19 18 23 23 N 1.31621 * 119.99673 * 359.71804 * 22 20 19 24 24 Si 1.86795 * 120.00115 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47274 * 89.99913 * 24 22 20 26 26 H 1.48505 * 109.47015 * 209.99478 * 24 22 20 27 27 H 1.48498 * 109.47362 * 329.99904 * 24 22 20 28 28 C 1.35204 * 113.71741 * 0.26328 * 8 7 6 29 29 S 1.70768 * 124.72426 * 44.95399 * 6 3 2 30 30 H 1.08997 * 109.46915 * 60.00650 * 1 2 3 31 31 H 1.08998 * 109.46876 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47493 * 300.00368 * 1 2 3 33 33 H 1.09000 * 109.47714 * 300.00828 * 5 3 2 34 34 H 1.09008 * 109.46998 * 60.00268 * 5 3 2 35 35 H 1.08994 * 109.47354 * 179.97438 * 5 3 2 36 36 H 1.09003 * 110.31362 * 300.91355 * 12 11 9 37 37 H 1.09008 * 110.31865 * 62.98849 * 12 11 9 38 38 H 1.09001 * 112.52781 * 191.70719 * 15 13 12 39 39 H 1.09000 * 112.31808 * 64.17222 * 15 13 12 40 40 H 1.08995 * 110.31611 * 169.85983 * 18 16 11 41 41 H 1.09002 * 110.30947 * 47.67196 * 18 16 11 42 42 H 0.97000 * 120.00043 * 180.02562 * 23 22 20 43 43 H 1.07998 * 125.58867 * 179.73572 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3386 1.2640 0.7104 7 7 3.7324 2.1277 1.5787 8 6 4.9447 1.9173 2.0983 9 6 5.5542 2.8032 3.1045 10 8 6.6629 2.5569 3.5398 11 7 4.8835 3.8869 3.5429 12 6 3.5367 4.3289 3.1222 13 6 3.2800 5.6498 3.9011 14 1 2.5125 6.3060 3.4906 15 6 4.7498 6.2105 3.9633 16 6 5.3497 4.8830 4.5525 17 1 6.4162 4.8753 4.7780 18 6 4.3870 4.6764 5.7628 19 7 3.0842 5.2133 5.3148 20 6 1.9295 5.2890 6.0470 21 1 1.0360 5.7045 5.6049 22 6 1.9074 4.8318 7.3574 23 7 2.9948 4.3204 7.8944 24 14 0.3324 4.9357 8.3565 25 1 -0.4547 3.6902 8.1708 26 1 0.6680 5.0995 9.7938 27 1 -0.4680 6.0999 7.8992 28 6 5.5622 0.8179 1.6104 29 16 4.5301 0.0634 0.4756 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.8829 1.0775 -1.9564 34 1 1.2568 1.8014 -1.9564 35 1 2.6605 2.7673 -1.4426 36 1 3.5171 4.5124 2.0479 37 1 2.7914 3.5803 3.3911 38 1 4.8476 7.0507 4.6507 39 1 5.1464 6.4426 2.9749 40 1 4.7461 5.2296 6.6306 41 1 4.2983 3.6160 5.9990 42 1 2.9793 4.0005 8.8100 43 1 6.5454 0.4718 1.8931 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032402853.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:01 Heat of formation + Delta-G solvation = 11.652182 kcal Electronic energy + Delta-G solvation = -27570.394131 eV Core-core repulsion = 23744.053972 eV Total energy + Delta-G solvation = -3826.340160 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.94766 -40.80903 -39.42298 -38.77152 -35.48459 -33.62893 -33.22442 -30.93340 -30.62029 -30.27276 -27.77756 -26.99687 -26.92244 -25.47349 -24.28513 -22.30101 -21.57479 -21.22455 -20.38387 -19.67918 -18.52508 -17.68489 -17.44178 -17.29037 -17.03638 -16.64226 -16.47866 -16.20926 -15.78570 -15.30228 -15.12642 -14.81083 -14.57953 -13.98996 -13.91646 -13.70637 -13.56165 -13.37699 -13.21899 -13.15963 -12.96024 -12.80746 -12.71773 -12.62080 -12.35321 -12.18632 -12.07326 -12.03033 -11.90439 -11.54394 -11.29987 -10.91950 -10.85295 -10.69731 -10.63268 -10.03187 -9.55098 -8.91436 -7.85179 -5.20915 -0.58544 0.20256 0.56577 0.81910 1.45001 1.46949 1.55801 1.91699 2.21355 2.37724 2.47732 3.19596 3.32067 3.39669 3.57003 3.72678 3.90309 3.96491 4.01074 4.07688 4.09292 4.17694 4.24068 4.51367 4.53968 4.58354 4.64265 4.70765 4.76121 4.86807 4.90404 4.91730 4.97929 5.00864 5.11192 5.22715 5.27063 5.42862 5.50134 5.62567 6.03789 6.08639 6.34599 6.53969 7.00619 7.01894 7.69694 8.40795 9.26396 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.011370 B = 0.003914 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.995511 B = 7152.571494 C = 8470.210284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.162 3.838 4 H 0.090 0.910 5 C -0.161 4.161 6 C 0.001 3.999 7 N -0.447 5.447 8 C -0.009 4.009 9 C 0.594 3.406 10 O -0.584 6.584 11 N -0.593 5.593 12 C 0.120 3.880 13 C 0.131 3.869 14 H 0.135 0.865 15 C -0.124 4.124 16 C 0.099 3.901 17 H 0.120 0.880 18 C 0.189 3.811 19 N -0.616 5.616 20 C -0.230 4.230 21 H 0.095 0.905 22 C -0.072 4.072 23 N -0.959 5.959 24 Si 0.978 3.022 25 H -0.292 1.292 26 H -0.300 1.300 27 H -0.260 1.260 28 C -0.239 4.239 29 S 0.323 5.677 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.044 0.956 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.024 0.976 41 H -0.008 1.008 42 H 0.244 0.756 43 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.135 -5.783 -23.559 24.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C 0.101 3.899 4 H 0.108 0.892 5 C -0.220 4.220 6 C -0.278 4.278 7 N -0.164 5.164 8 C -0.145 4.145 9 C 0.381 3.619 10 O -0.466 6.466 11 N -0.324 5.324 12 C -0.004 4.004 13 C 0.024 3.976 14 H 0.153 0.847 15 C -0.164 4.164 16 C -0.004 4.004 17 H 0.138 0.862 18 C 0.063 3.937 19 N -0.341 5.341 20 C -0.358 4.358 21 H 0.113 0.887 22 C -0.264 4.264 23 N -0.608 5.608 24 Si 0.807 3.193 25 H -0.220 1.220 26 H -0.226 1.226 27 H -0.184 1.184 28 C -0.382 4.382 29 S 0.581 5.419 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.062 0.938 38 H 0.106 0.894 39 H 0.119 0.881 40 H 0.042 0.958 41 H 0.010 0.990 42 H 0.053 0.947 43 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -1.848 -6.623 -23.619 24.600 hybrid contribution -0.248 0.410 2.338 2.387 sum -2.096 -6.213 -21.281 22.268 Atomic orbital electron populations 1.23042 0.78334 1.04366 1.01220 1.87846 1.22244 1.26372 1.95277 1.20418 0.87142 0.86241 0.96066 0.89238 1.22261 1.04529 1.02359 0.92824 1.27342 1.03490 0.96807 1.00145 1.66990 1.12304 1.28432 1.08692 1.20118 0.92467 0.98759 1.03145 1.17154 0.84027 0.79801 0.80916 1.90727 1.21053 1.73838 1.60991 1.49089 1.18874 1.23945 1.40447 1.22929 0.81515 0.97143 0.98821 1.23652 0.96345 0.93262 0.84316 0.84727 1.24099 0.95818 0.94778 1.01655 1.24330 0.98703 0.88475 0.88866 0.86209 1.21500 0.84868 0.94942 0.92352 1.45478 1.07389 1.71456 1.09729 1.19549 0.89050 1.33564 0.93676 0.88692 1.25678 1.00407 1.01656 0.98693 1.70168 1.28613 1.48066 1.13952 0.85073 0.78897 0.77969 0.77384 1.21981 1.22647 1.18410 1.26984 1.07946 0.99481 1.03828 1.82419 1.02934 1.24057 1.32526 0.91510 0.87855 0.94122 0.90831 0.89090 0.90686 0.89452 0.93782 0.89397 0.88075 0.95784 0.99016 0.94731 0.78684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.82 113.37 1.23 1.56 16 2 O -0.40 -7.40 10.17 -148.98 -1.51 -8.91 16 3 C 0.16 3.06 3.23 29.85 0.10 3.15 16 4 H 0.09 1.77 7.79 -2.39 -0.02 1.75 16 5 C -0.16 -2.04 9.51 71.98 0.68 -1.35 16 6 C 0.00 0.03 6.30 88.57 0.56 0.59 16 7 N -0.45 -14.07 7.90 -180.84 -1.43 -15.50 16 8 C -0.01 -0.33 6.63 40.56 0.27 -0.06 16 9 C 0.59 24.77 7.87 86.62 0.68 25.46 16 10 O -0.58 -26.99 17.06 -4.13 -0.07 -27.06 16 11 N -0.59 -24.28 2.95 -773.26 -2.28 -26.56 16 12 C 0.12 4.48 4.86 86.97 0.42 4.91 16 13 C 0.13 4.90 5.51 46.88 0.26 5.16 16 14 H 0.14 4.25 8.14 -2.39 -0.02 4.23 16 15 C -0.12 -4.15 6.83 33.62 0.23 -3.92 16 16 C 0.10 4.10 5.25 46.95 0.25 4.34 16 17 H 0.12 4.79 8.05 -2.39 -0.02 4.77 16 18 C 0.19 9.91 4.76 87.17 0.42 10.33 16 19 N -0.62 -31.00 3.02 -648.98 -1.96 -32.96 16 20 C -0.23 -12.57 10.37 84.03 0.87 -11.69 16 21 H 0.10 4.79 7.83 -2.91 -0.02 4.77 16 22 C -0.07 -4.14 5.49 84.86 0.47 -3.68 16 23 N -0.96 -59.93 10.56 21.65 0.23 -59.71 16 24 Si 0.98 46.18 29.55 68.60 2.03 48.21 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 26 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 27 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 28 C -0.24 -6.59 10.62 67.12 0.71 -5.88 16 29 S 0.32 6.48 22.73 -56.49 -1.28 5.20 16 30 H 0.07 0.57 7.87 -2.39 -0.02 0.55 16 31 H 0.10 1.03 8.14 -2.39 -0.02 1.02 16 32 H 0.04 0.59 8.08 -2.39 -0.02 0.57 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.09 0.79 7.87 -2.38 -0.02 0.78 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 2.77 7.60 -2.39 -0.02 2.76 16 37 H 0.04 1.92 7.80 -2.38 -0.02 1.91 16 38 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 39 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 40 H 0.02 1.39 7.47 -2.39 -0.02 1.37 16 41 H -0.01 -0.52 7.67 -2.39 -0.02 -0.54 16 42 H 0.24 14.97 8.31 -92.71 -0.77 14.20 16 43 H 0.20 4.92 8.03 -2.91 -0.02 4.90 16 Total: -1.00 -77.18 366.53 1.88 -75.30 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 1.02 Total: 13.08 kcal Atomic # 6 Polarization: 21.77 SS G_CDS: 7.14 Total: 28.91 kcal Atomic # 7 Polarization: -129.29 SS G_CDS: -5.44 Total: -134.73 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -1.59 Total: -35.98 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Atomic # 16 Polarization: 6.48 SS G_CDS: -1.28 Total: 5.20 kcal Total: -77.18 1.88 -75.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032402853.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.957 kcal (2) G-P(sol) polarization free energy of solvation -77.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds