Wall clock time and date at job start Tue Mar 31 2020 20:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00103 * 2 1 4 4 H 1.09003 * 109.47003 * 330.00247 * 3 2 1 5 5 C 1.53000 * 109.46861 * 90.00065 * 3 2 1 6 6 C 1.50693 * 109.46914 * 210.00134 * 3 2 1 7 7 N 1.29433 * 124.80730 * 314.95755 * 6 3 2 8 8 C 1.30939 * 117.36512 * 179.76983 * 7 6 3 9 9 C 1.35659 * 114.19246 * 0.48260 * 8 7 6 10 10 C 1.46687 * 126.13339 * 179.82415 * 9 8 7 11 11 O 1.21683 * 119.99761 * 5.16055 * 10 9 8 12 12 N 1.34769 * 120.00268 * 185.15960 * 10 9 8 13 13 C 1.47878 * 126.94263 * 354.86205 * 12 10 9 14 14 C 1.56021 * 105.10225 * 182.02018 * 13 12 10 15 15 H 1.08996 * 116.24798 * 158.83148 * 14 13 12 16 16 C 1.57085 * 99.60767 * 32.80553 * 14 13 12 17 17 C 1.49292 * 126.94795 * 174.88203 * 12 10 9 18 18 H 1.08999 * 116.14913 * 15.82576 * 17 12 10 19 19 C 1.56018 * 104.09538 * 246.68052 * 17 12 10 20 20 N 1.47873 * 105.10125 * 288.76435 * 19 17 12 21 21 C 1.36939 * 126.94003 * 181.99984 * 20 19 17 22 22 H 1.08001 * 119.99834 * 180.02562 * 21 20 19 23 23 C 1.38809 * 120.00197 * 0.02763 * 21 20 19 24 24 N 1.31625 * 119.99904 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00031 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47202 * 90.00155 * 25 23 21 27 27 H 1.48500 * 109.47363 * 209.99837 * 25 23 21 28 28 H 1.48498 * 109.46916 * 330.00095 * 25 23 21 29 29 S 1.70956 * 124.80415 * 135.00124 * 6 3 2 30 30 H 1.09000 * 109.47374 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47332 * 299.99986 * 1 2 3 32 32 H 1.08996 * 109.47173 * 59.99703 * 1 2 3 33 33 H 1.08994 * 109.47206 * 60.00071 * 5 3 2 34 34 H 1.09000 * 109.46842 * 180.02562 * 5 3 2 35 35 H 1.08997 * 109.47352 * 299.99433 * 5 3 2 36 36 H 1.07999 * 122.90388 * 180.30554 * 8 7 6 37 37 H 1.08997 * 110.31291 * 300.92255 * 13 12 10 38 38 H 1.08996 * 110.31544 * 63.01161 * 13 12 10 39 39 H 1.08998 * 112.36686 * 191.71565 * 16 14 13 40 40 H 1.08999 * 112.37051 * 64.26841 * 16 14 13 41 41 H 1.08997 * 110.31657 * 47.67288 * 19 17 12 42 42 H 1.08994 * 110.31328 * 169.85641 * 19 17 12 43 43 H 0.97003 * 119.99861 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.3386 1.2638 -0.7104 7 7 4.2434 0.3555 -0.5326 8 6 5.3455 0.4588 -1.2320 9 6 5.3827 1.5366 -2.0550 10 6 6.4865 1.9053 -2.9479 11 8 7.4464 1.1668 -3.0658 12 7 6.4376 3.0621 -3.6378 13 6 5.3096 4.0168 -3.6933 14 6 5.7748 5.1391 -4.6721 15 1 4.9867 5.7394 -5.1266 16 6 6.6576 4.2843 -5.6506 17 6 7.5109 3.6383 -4.5008 18 1 8.3084 2.9562 -4.7954 19 6 7.9520 4.9308 -3.7463 20 7 6.8256 5.8750 -3.9086 21 6 6.7596 7.1639 -3.4507 22 1 5.8759 7.7572 -3.6334 23 6 7.8286 7.7078 -2.7520 24 7 8.9055 6.9845 -2.5291 25 14 7.7389 9.4663 -2.1281 26 1 7.1606 9.4774 -0.7603 27 1 9.1042 10.0493 -2.0930 28 1 6.8805 10.2700 -3.0350 29 16 3.8642 2.4102 -1.8646 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 2.8829 1.0774 1.9563 34 1 2.6606 2.7672 1.4425 35 1 1.2569 1.8014 1.9563 36 1 6.1560 -0.2511 -1.1580 37 1 4.4163 3.5251 -4.0784 38 1 5.1160 4.4315 -2.7041 39 1 7.2591 4.9042 -6.3154 40 1 6.0729 3.5452 -6.1985 41 1 8.1162 4.7153 -2.6906 42 1 8.8569 5.3406 -4.1949 43 1 9.6523 7.3645 -2.0404 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032405644.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:05 Heat of formation + Delta-G solvation = 33.133945 kcal Electronic energy + Delta-G solvation = -27185.071851 eV Core-core repulsion = 23359.663211 eV Total energy + Delta-G solvation = -3825.408640 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.31781 -39.82743 -38.35281 -37.59517 -33.76065 -32.69620 -31.72873 -29.91754 -28.94384 -28.61764 -27.11277 -26.07050 -25.28888 -23.81161 -22.88880 -21.74437 -20.06935 -19.62331 -18.75736 -18.33931 -17.19691 -16.54708 -16.38665 -15.98724 -15.66638 -15.55034 -15.23492 -14.79541 -14.27137 -14.14685 -13.95829 -13.48594 -13.41071 -13.22210 -12.94847 -12.55962 -12.36464 -12.03632 -11.98943 -11.79984 -11.57085 -11.39794 -11.30502 -11.13952 -10.94474 -10.92076 -10.70623 -10.39788 -10.23331 -10.15178 -9.85692 -9.71953 -9.47807 -9.42886 -8.98247 -8.78524 -8.13687 -7.02167 -5.84093 -3.19326 0.25204 1.11889 1.57738 2.52504 3.16174 3.32684 3.37381 3.40197 3.40720 3.54821 3.91356 4.34865 4.46544 4.67984 4.76572 4.96407 4.99894 5.04350 5.05442 5.06676 5.24663 5.32505 5.33605 5.41763 5.46539 5.47359 5.51044 5.66711 5.74092 5.90397 6.00163 6.08642 6.16558 6.29468 6.35149 6.47752 6.55803 6.78100 7.33536 7.38686 7.63485 7.64995 7.87713 8.01583 8.35411 9.02128 9.63192 10.30983 11.27918 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013645 B = 0.003461 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.545693 B = 8089.113588 C = 9118.530623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.168 3.832 4 H 0.081 0.919 5 C -0.168 4.168 6 C 0.020 3.980 7 N -0.453 5.453 8 C 0.107 3.893 9 C -0.271 4.271 10 C 0.606 3.394 11 O -0.540 6.540 12 N -0.600 5.600 13 C 0.069 3.931 14 C 0.147 3.853 15 H 0.110 0.890 16 C -0.151 4.151 17 C 0.101 3.899 18 H 0.118 0.882 19 C 0.173 3.827 20 N -0.595 5.595 21 C -0.235 4.235 22 H 0.082 0.918 23 C -0.004 4.004 24 N -0.918 5.918 25 Si 0.913 3.087 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.280 1.280 29 S 0.205 5.795 30 H 0.089 0.911 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.187 0.813 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.048 0.952 42 H 0.060 0.940 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.994 -9.367 0.879 18.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.283 6.283 3 C 0.106 3.894 4 H 0.099 0.901 5 C -0.227 4.227 6 C -0.255 4.255 7 N -0.168 5.168 8 C -0.051 4.051 9 C -0.396 4.396 10 C 0.393 3.607 11 O -0.420 6.420 12 N -0.333 5.333 13 C -0.057 4.057 14 C 0.038 3.962 15 H 0.128 0.872 16 C -0.190 4.190 17 C -0.001 4.001 18 H 0.136 0.864 19 C 0.048 3.952 20 N -0.319 5.319 21 C -0.363 4.363 22 H 0.100 0.900 23 C -0.201 4.201 24 N -0.564 5.564 25 Si 0.744 3.256 26 H -0.216 1.216 27 H -0.216 1.216 28 H -0.206 1.206 29 S 0.463 5.537 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.204 0.796 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.798 -9.283 0.972 18.349 hybrid contribution 0.516 0.463 0.675 0.967 sum -15.282 -8.820 1.647 17.722 Atomic orbital electron populations 1.22877 0.80806 1.03183 1.00114 1.88093 1.19476 1.25840 1.94940 1.20462 0.87509 0.86091 0.95325 0.90075 1.22264 1.03196 1.02426 0.94853 1.27464 1.00166 0.96723 1.01101 1.66143 1.00846 1.25659 1.24105 1.22170 0.95578 0.96149 0.91231 1.25927 1.00975 1.03115 1.09564 1.16274 0.84694 0.80507 0.79222 1.90804 1.33910 1.51002 1.66248 1.49077 1.18548 1.19318 1.46313 1.23534 0.87809 0.91742 1.02639 1.23120 0.92680 0.90162 0.90239 0.87185 1.24180 0.99218 0.99110 0.96530 1.24440 0.90150 0.95009 0.90524 0.86398 1.21972 0.90849 0.84363 0.98058 1.45250 1.13093 1.10561 1.63000 1.19041 1.01130 0.86580 1.29514 0.90034 1.24834 0.96299 0.98489 1.00494 1.69910 1.05981 1.35658 1.44856 0.86109 0.76910 0.83876 0.78746 1.21569 1.21640 1.20568 1.84279 1.08845 1.25968 1.34610 0.89240 0.93737 0.93822 0.90637 0.90958 0.91291 0.79590 0.92394 0.90360 0.89378 0.91460 0.93348 0.92198 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.82 101.05 1.09 1.28 16 2 O -0.37 -4.16 10.32 -35.23 -0.36 -4.52 16 3 C 0.17 1.76 3.23 -27.89 -0.09 1.67 16 4 H 0.08 0.65 7.78 -51.93 -0.40 0.24 16 5 C -0.17 -1.56 9.51 37.16 0.35 -1.21 16 6 C 0.02 0.27 6.28 -13.29 -0.08 0.19 16 7 N -0.45 -7.00 10.49 -11.50 -0.12 -7.12 16 8 C 0.11 1.68 11.09 -18.85 -0.21 1.47 16 9 C -0.27 -4.47 6.41 -37.09 -0.24 -4.70 16 10 C 0.61 11.55 7.85 -12.85 -0.10 11.45 16 11 O -0.54 -11.60 17.21 5.20 0.09 -11.51 16 12 N -0.60 -11.05 2.95 -158.29 -0.47 -11.52 16 13 C 0.07 1.15 4.59 -1.67 -0.01 1.14 16 14 C 0.15 2.59 5.53 -62.55 -0.35 2.25 16 15 H 0.11 1.69 8.14 -51.93 -0.42 1.26 16 16 C -0.15 -2.43 6.81 -22.30 -0.15 -2.58 16 17 C 0.10 1.90 5.25 -62.55 -0.33 1.57 16 18 H 0.12 2.15 8.03 -51.93 -0.42 1.73 16 19 C 0.17 4.01 4.76 -1.67 -0.01 4.00 16 20 N -0.60 -13.72 3.02 -156.34 -0.47 -14.19 16 21 C -0.23 -6.01 10.37 -15.06 -0.16 -6.17 16 22 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 23 C 0.00 -0.11 5.49 -17.43 -0.10 -0.20 16 24 N -0.92 -26.08 10.56 55.49 0.59 -25.50 16 25 Si 0.91 21.13 29.55 -169.99 -5.02 16.11 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 S 0.20 2.71 18.93 -107.50 -2.03 0.67 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.04 0.25 7.87 -51.93 -0.41 -0.16 16 32 H 0.04 0.26 8.08 -51.93 -0.42 -0.16 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16 36 H 0.19 2.73 8.06 -52.49 -0.42 2.30 16 37 H 0.06 0.80 7.14 -51.93 -0.37 0.43 16 38 H 0.08 1.41 7.07 -51.93 -0.37 1.04 16 39 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.05 1.31 7.68 -51.93 -0.40 0.91 16 42 H 0.06 1.53 7.46 -51.93 -0.39 1.14 16 43 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 364.39 15.07 5.49 5.49 Total: -1.00 -32.38 364.39 -8.77 -41.15 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.09 Total: 0.79 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: -0.37 Total: 10.15 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: -0.47 Total: -58.33 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.27 Total: -16.03 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -2.03 Total: 0.67 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.38 -8.77 -41.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032405644.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.286 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds