Wall clock time and date at job start Tue Mar 31 2020 20:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.49689 * 2 1 4 4 C 1.53192 * 109.49516 * 239.94011 * 2 1 3 5 5 N 1.46925 * 108.77462 * 185.41271 * 4 2 1 6 6 C 1.34774 * 120.63206 * 233.58502 * 5 4 2 7 7 O 1.21626 * 119.99996 * 6.47677 * 6 5 4 8 8 C 1.47165 * 120.00301 * 186.48119 * 6 5 4 9 9 C 1.36609 * 125.16479 * 210.92499 * 8 6 5 10 10 C 1.36799 * 114.74953 * 180.02562 * 9 8 6 11 11 C 1.36611 * 114.74133 * 0.02562 * 10 9 8 12 12 C 1.47174 * 125.15999 * 179.97438 * 11 10 9 13 13 N 1.34773 * 120.00109 * 180.02562 * 12 11 10 14 14 O 1.21626 * 119.99832 * 359.97438 * 12 11 10 15 15 S 1.75834 * 109.68086 * 359.97438 * 11 10 9 16 16 C 1.46924 * 118.73747 * 53.85818 * 5 4 2 17 17 C 1.53622 * 108.54597 * 306.09522 * 16 5 4 18 18 C 1.53039 * 109.49768 * 120.10276 * 2 1 3 19 19 H 1.08998 * 109.46394 * 61.30979 * 18 2 1 20 20 N 1.46499 * 109.45695 * 301.33365 * 18 2 1 21 21 C 1.36941 * 119.99801 * 155.00550 * 20 18 2 22 22 H 1.07995 * 120.00112 * 359.97438 * 21 20 18 23 23 C 1.38819 * 119.99932 * 180.02562 * 21 20 18 24 24 N 1.31619 * 119.99690 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 119.99991 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47083 * 90.00055 * 25 23 21 27 27 H 1.48498 * 109.46939 * 210.00219 * 25 23 21 28 28 H 1.48501 * 109.47189 * 329.99817 * 25 23 21 29 29 H 1.09001 * 109.47159 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47331 * 300.05954 * 1 2 3 31 31 H 1.08998 * 109.47375 * 60.06621 * 1 2 3 32 32 H 1.08995 * 109.59288 * 65.62323 * 4 2 1 33 33 H 1.09001 * 109.70279 * 305.26794 * 4 2 1 34 34 H 1.08003 * 122.62645 * 0.06540 * 9 8 6 35 35 H 1.07997 * 122.62821 * 180.02562 * 10 9 8 36 36 H 0.97002 * 119.99789 * 359.97438 * 13 12 11 37 37 H 0.96993 * 120.00219 * 179.97438 * 13 12 11 38 38 H 1.08998 * 109.58888 * 65.93016 * 16 5 4 39 39 H 1.09003 * 109.58600 * 186.35115 * 16 5 4 40 40 H 1.09008 * 109.63351 * 294.86502 * 17 16 5 41 41 H 1.08995 * 109.45954 * 174.74125 * 17 16 5 42 42 H 0.97000 * 120.00384 * 335.00624 * 20 18 2 43 43 H 0.96997 * 119.99821 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0412 -0.7234 -1.2499 5 7 3.5045 -0.8287 -1.1699 6 6 4.2810 -0.3857 -2.1785 7 8 3.7820 0.2124 -3.1126 8 6 5.7327 -0.6256 -2.1496 9 6 6.6771 0.1966 -2.6957 10 6 7.9670 -0.2335 -2.5455 11 6 8.1009 -1.4157 -1.8742 12 6 9.3787 -2.0862 -1.5851 13 7 9.3900 -3.2544 -0.9132 14 8 10.4246 -1.5865 -1.9535 15 16 6.5149 -2.0149 -1.4079 16 6 4.1050 -1.4318 0.0277 17 6 3.5708 -0.6955 1.2657 18 6 2.0408 -0.7236 1.2481 19 1 1.6970 -1.7578 1.2346 20 7 1.5265 -0.0538 2.4452 21 6 1.3965 -0.7504 3.6170 22 1 1.6727 -1.7937 3.6584 23 6 0.9087 -0.1160 4.7512 24 7 0.7833 -0.7857 5.8773 25 14 0.4304 1.6883 4.6793 26 1 -1.0007 1.8063 4.3008 27 1 0.6432 2.3102 6.0109 28 1 1.2685 2.3827 3.6691 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5147 0.8894 31 1 -0.3634 0.5128 -0.8905 32 1 1.7637 -0.1573 -2.1390 33 1 1.6053 -1.7211 -1.3012 34 1 6.4251 1.1148 -3.2056 35 1 8.8130 0.3183 -2.9276 36 1 8.5558 -3.6531 -0.6197 37 1 10.2321 -3.6965 -0.7230 38 1 3.8338 -2.4861 0.0811 39 1 5.1896 -1.3332 -0.0181 40 1 3.9159 0.3385 1.2541 41 1 3.9334 -1.1899 2.1668 42 1 1.2781 0.8831 2.4079 43 1 0.4421 -0.3425 6.6698 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036214244.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:55 Heat of formation + Delta-G solvation = -20.939112 kcal Electronic energy + Delta-G solvation = -26757.084892 eV Core-core repulsion = 22929.331468 eV Total energy + Delta-G solvation = -3827.753424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.41882 -39.88931 -38.16324 -37.14103 -34.92929 -34.18624 -33.08442 -31.68751 -30.44185 -29.90663 -27.17894 -25.92280 -24.85133 -22.79272 -22.24010 -21.76961 -21.09830 -19.88396 -19.45934 -18.31618 -17.58554 -17.44810 -17.14618 -16.12591 -15.96087 -15.40877 -15.22814 -15.08860 -14.82515 -14.44827 -14.04671 -13.88754 -13.49015 -13.39809 -13.30708 -13.07536 -12.70562 -12.55998 -12.38644 -12.15558 -11.87015 -11.55155 -11.41604 -11.13360 -10.99027 -10.82315 -10.69610 -10.61767 -10.32171 -10.22909 -10.16234 -9.87327 -9.65713 -9.27420 -9.06314 -8.82047 -8.73115 -7.35350 -5.84937 -3.20800 -0.25080 0.86147 1.25560 1.76480 2.62678 2.75267 2.94415 2.97518 3.31846 3.34986 3.40663 4.17256 4.43216 4.52122 4.78603 4.81010 4.93363 4.97904 5.02067 5.10027 5.31563 5.34911 5.49966 5.51833 5.55264 5.65233 5.71948 5.84304 5.86392 5.91708 5.99214 6.14679 6.18750 6.25927 6.28229 6.37902 6.58755 6.65166 6.76059 6.83255 7.17720 7.70895 7.87003 7.89898 8.34073 9.11942 9.84823 10.04318 11.33196 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.014760 B = 0.003044 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.571786 B = 9194.750928 C =10321.994762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.115 4.115 3 H 0.070 0.930 4 C 0.122 3.878 5 N -0.600 5.600 6 C 0.585 3.415 7 O -0.527 6.527 8 C -0.217 4.217 9 C -0.078 4.078 10 C -0.061 4.061 11 C -0.261 4.261 12 C 0.597 3.403 13 N -0.848 5.848 14 O -0.529 6.529 15 S 0.213 5.787 16 C 0.092 3.908 17 C -0.148 4.148 18 C 0.189 3.811 19 H 0.059 0.941 20 N -0.744 5.744 21 C -0.245 4.245 22 H 0.091 0.909 23 C 0.007 3.993 24 N -0.932 5.932 25 Si 0.881 3.119 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.277 1.277 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.401 0.599 37 H 0.411 0.589 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.084 0.916 42 H 0.361 0.639 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.932 -4.652 -16.671 21.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.135 4.135 3 H 0.089 0.911 4 C 0.000 4.000 5 N -0.332 5.332 6 C 0.372 3.628 7 O -0.405 6.405 8 C -0.339 4.339 9 C -0.111 4.111 10 C -0.095 4.095 11 C -0.382 4.382 12 C 0.381 3.619 13 N -0.412 5.412 14 O -0.406 6.406 15 S 0.483 5.517 16 C -0.032 4.032 17 C -0.190 4.190 18 C 0.079 3.921 19 H 0.077 0.923 20 N -0.386 5.386 21 C -0.374 4.374 22 H 0.108 0.892 23 C -0.189 4.189 24 N -0.580 5.580 25 Si 0.712 3.288 26 H -0.210 1.210 27 H -0.218 1.218 28 H -0.204 1.204 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.176 0.824 35 H 0.176 0.824 36 H 0.229 0.771 37 H 0.243 0.757 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.103 0.897 42 H 0.194 0.806 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.694 -5.390 -16.469 20.905 hybrid contribution 0.162 2.136 -0.195 2.151 sum 11.856 -3.254 -16.664 20.708 Atomic orbital electron populations 1.21667 0.93901 1.02255 1.01682 1.21800 0.96747 1.00181 0.94730 0.91116 1.21773 0.77341 1.01301 0.99551 1.48044 1.07489 1.59977 1.17672 1.17100 0.83993 0.79101 0.82641 1.90816 1.73718 1.41000 1.34968 1.24916 0.98021 1.01716 1.09253 1.20540 0.90528 1.00960 0.99033 1.20552 0.97986 0.94181 0.96748 1.25042 0.97985 1.03324 1.11861 1.17050 0.87087 0.80470 0.77271 1.43681 1.13211 1.24328 1.60025 1.90870 1.32419 1.65014 1.52298 1.84195 0.94636 1.22407 1.50503 1.22396 0.97672 0.98025 0.85123 1.22726 1.00032 1.00478 0.95725 1.20169 0.90297 0.96152 0.85503 0.92334 1.42770 1.78087 1.10140 1.07592 1.19035 1.36601 0.95702 0.86089 0.89169 1.24656 1.01229 0.97396 0.95608 1.69691 1.51865 1.35742 1.00678 0.86603 0.78613 0.86733 0.76870 1.21027 1.21761 1.20361 0.92455 0.91365 0.93438 0.88933 0.90867 0.82380 0.82447 0.77062 0.75749 0.90462 0.90182 0.92032 0.89732 0.80560 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.02 37.16 0.34 -1.59 16 2 C -0.11 -1.65 2.46 -90.50 -0.22 -1.87 16 3 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.12 1.54 5.72 -3.71 -0.02 1.52 16 5 N -0.60 -7.55 2.97 -173.87 -0.52 -8.06 16 6 C 0.59 7.87 7.59 -12.64 -0.10 7.78 16 7 O -0.53 -8.55 16.40 5.25 0.09 -8.47 16 8 C -0.22 -2.41 5.74 -36.55 -0.21 -2.62 16 9 C -0.08 -0.79 10.01 -40.69 -0.41 -1.20 16 10 C -0.06 -0.59 9.88 -40.69 -0.40 -0.99 16 11 C -0.26 -2.47 6.46 -36.54 -0.24 -2.71 16 12 C 0.60 5.90 8.08 -12.63 -0.10 5.80 16 13 N -0.85 -5.11 8.87 30.37 0.27 -4.84 16 14 O -0.53 -7.11 17.65 5.25 0.09 -7.02 16 15 S 0.21 1.77 18.58 -107.50 -2.00 -0.22 16 16 C 0.09 1.06 5.54 -3.49 -0.02 1.04 16 17 C -0.15 -2.22 5.67 -26.39 -0.15 -2.37 16 18 C 0.19 3.18 2.19 -67.89 -0.15 3.03 16 19 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 20 N -0.74 -16.02 4.22 -53.38 -0.23 -16.24 16 21 C -0.24 -6.38 10.41 -15.05 -0.16 -6.54 16 22 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 23 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 24 N -0.93 -28.12 13.97 55.49 0.78 -27.35 16 25 Si 0.88 21.30 27.73 -169.99 -4.71 16.59 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.10 7.36 -51.93 -0.38 0.72 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 1.21 7.00 -51.93 -0.36 0.84 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.16 1.46 8.06 -52.48 -0.42 1.03 16 35 H 0.16 1.34 8.04 -52.49 -0.42 0.92 16 36 H 0.40 1.60 7.93 -40.82 -0.32 1.28 16 37 H 0.41 1.83 8.93 -40.82 -0.36 1.46 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.82 3.99 -26.30 -0.10 0.72 16 40 H 0.06 0.98 8.14 -51.92 -0.42 0.55 16 41 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.36 7.87 5.37 -40.82 -0.22 7.65 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 363.52 15.07 5.48 5.48 Total: -1.00 -33.80 363.52 -8.26 -42.06 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -5.57 Total: 8.68 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -1.93 Total: -0.61 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.30 Total: -56.49 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.18 Total: -15.48 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.71 Total: 16.59 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.00 Total: -0.22 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.80 -8.26 -42.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036214244.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.121 kcal (2) G-P(sol) polarization free energy of solvation -33.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds