Wall clock time and date at job start Tue Mar 31 2020 20:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.49689 * 2 1 4 4 C 1.53192 * 109.49516 * 239.94011 * 2 1 3 5 5 N 1.46925 * 108.77462 * 185.41271 * 4 2 1 6 6 C 1.34774 * 120.63206 * 233.58502 * 5 4 2 7 7 O 1.21626 * 119.99996 * 6.47677 * 6 5 4 8 8 C 1.47165 * 120.00301 * 186.48119 * 6 5 4 9 9 C 1.36609 * 125.16479 * 210.92499 * 8 6 5 10 10 C 1.36799 * 114.74953 * 180.02562 * 9 8 6 11 11 C 1.36611 * 114.74133 * 0.02562 * 10 9 8 12 12 C 1.47174 * 125.15999 * 179.97438 * 11 10 9 13 13 N 1.34773 * 120.00109 * 180.02562 * 12 11 10 14 14 O 1.21626 * 119.99832 * 359.97438 * 12 11 10 15 15 S 1.75834 * 109.68086 * 359.97438 * 11 10 9 16 16 C 1.46924 * 118.73747 * 53.85818 * 5 4 2 17 17 C 1.53622 * 108.54597 * 306.09522 * 16 5 4 18 18 C 1.53039 * 109.49768 * 120.10276 * 2 1 3 19 19 H 1.08998 * 109.46394 * 61.30979 * 18 2 1 20 20 N 1.46499 * 109.45695 * 301.33365 * 18 2 1 21 21 C 1.36941 * 119.99801 * 155.00550 * 20 18 2 22 22 H 1.07995 * 120.00112 * 359.97438 * 21 20 18 23 23 C 1.38819 * 119.99932 * 180.02562 * 21 20 18 24 24 N 1.31619 * 119.99690 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 119.99991 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47083 * 90.00055 * 25 23 21 27 27 H 1.48498 * 109.46939 * 210.00219 * 25 23 21 28 28 H 1.48501 * 109.47189 * 329.99817 * 25 23 21 29 29 H 1.09001 * 109.47159 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47331 * 300.05954 * 1 2 3 31 31 H 1.08998 * 109.47375 * 60.06621 * 1 2 3 32 32 H 1.08995 * 109.59288 * 65.62323 * 4 2 1 33 33 H 1.09001 * 109.70279 * 305.26794 * 4 2 1 34 34 H 1.08003 * 122.62645 * 0.06540 * 9 8 6 35 35 H 1.07997 * 122.62821 * 180.02562 * 10 9 8 36 36 H 0.97002 * 119.99789 * 359.97438 * 13 12 11 37 37 H 0.96993 * 120.00219 * 179.97438 * 13 12 11 38 38 H 1.08998 * 109.58888 * 65.93016 * 16 5 4 39 39 H 1.09003 * 109.58600 * 186.35115 * 16 5 4 40 40 H 1.09008 * 109.63351 * 294.86502 * 17 16 5 41 41 H 1.08995 * 109.45954 * 174.74125 * 17 16 5 42 42 H 0.97000 * 120.00384 * 335.00624 * 20 18 2 43 43 H 0.96997 * 119.99821 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0412 -0.7234 -1.2499 5 7 3.5045 -0.8287 -1.1699 6 6 4.2810 -0.3857 -2.1785 7 8 3.7820 0.2124 -3.1126 8 6 5.7327 -0.6256 -2.1496 9 6 6.6771 0.1966 -2.6957 10 6 7.9670 -0.2335 -2.5455 11 6 8.1009 -1.4157 -1.8742 12 6 9.3787 -2.0862 -1.5851 13 7 9.3900 -3.2544 -0.9132 14 8 10.4246 -1.5865 -1.9535 15 16 6.5149 -2.0149 -1.4079 16 6 4.1050 -1.4318 0.0277 17 6 3.5708 -0.6955 1.2657 18 6 2.0408 -0.7236 1.2481 19 1 1.6970 -1.7578 1.2346 20 7 1.5265 -0.0538 2.4452 21 6 1.3965 -0.7504 3.6170 22 1 1.6727 -1.7937 3.6584 23 6 0.9087 -0.1160 4.7512 24 7 0.7833 -0.7857 5.8773 25 14 0.4304 1.6883 4.6793 26 1 -1.0007 1.8063 4.3008 27 1 0.6432 2.3102 6.0109 28 1 1.2685 2.3827 3.6691 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5147 0.8894 31 1 -0.3634 0.5128 -0.8905 32 1 1.7637 -0.1573 -2.1390 33 1 1.6053 -1.7211 -1.3012 34 1 6.4251 1.1148 -3.2056 35 1 8.8130 0.3183 -2.9276 36 1 8.5558 -3.6531 -0.6197 37 1 10.2321 -3.6965 -0.7230 38 1 3.8338 -2.4861 0.0811 39 1 5.1896 -1.3332 -0.0181 40 1 3.9159 0.3385 1.2541 41 1 3.9334 -1.1899 2.1668 42 1 1.2781 0.8831 2.4079 43 1 0.4421 -0.3425 6.6698 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036214244.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:54 Heat of formation + Delta-G solvation = -45.944041 kcal Electronic energy + Delta-G solvation = -26758.169187 eV Core-core repulsion = 22929.331468 eV Total energy + Delta-G solvation = -3828.837719 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.46605 -40.67534 -39.30008 -38.03161 -36.35970 -34.89486 -34.56074 -33.26119 -31.62114 -31.13473 -28.14658 -27.15068 -26.03909 -24.26020 -23.13838 -22.91485 -22.12439 -21.16570 -20.21238 -19.59302 -19.08914 -18.25191 -17.97907 -17.06347 -16.78685 -16.76123 -16.33258 -16.06235 -15.99252 -15.74359 -15.31649 -14.98536 -14.88855 -14.53301 -14.33794 -14.22344 -14.00650 -13.62308 -13.53643 -13.36702 -12.96889 -12.94846 -12.85878 -12.46812 -12.27886 -12.16764 -11.98313 -11.88494 -11.75300 -11.52653 -11.22819 -11.18238 -10.92023 -10.89376 -10.10665 -9.77092 -9.58884 -9.23715 -7.98676 -5.30204 -1.04778 0.10488 0.48767 0.96341 1.39461 1.40212 1.47426 1.65286 1.90045 2.06714 2.33692 2.50357 3.24280 3.33533 3.53697 3.73996 3.80751 3.90252 3.98576 4.05024 4.18969 4.24202 4.31361 4.44094 4.52939 4.70443 4.72843 4.79942 4.81775 4.88425 4.89302 5.01139 5.12004 5.16212 5.24092 5.36936 5.42890 5.57268 5.72105 5.82371 6.16398 6.17735 6.25675 6.85876 7.07867 7.11806 7.88887 8.06358 9.22729 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.014760 B = 0.003044 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.571786 B = 9194.750928 C =10321.994762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 H 0.061 0.939 4 C 0.127 3.873 5 N -0.600 5.600 6 C 0.587 3.413 7 O -0.560 6.560 8 C -0.250 4.250 9 C -0.073 4.073 10 C -0.069 4.069 11 C -0.266 4.266 12 C 0.595 3.405 13 N -0.828 5.828 14 O -0.570 6.570 15 S 0.275 5.725 16 C 0.099 3.901 17 C -0.142 4.142 18 C 0.182 3.818 19 H 0.057 0.943 20 N -0.748 5.748 21 C -0.216 4.216 22 H 0.066 0.934 23 C -0.061 4.061 24 N -0.983 5.983 25 Si 0.943 3.057 26 H -0.281 1.281 27 H -0.302 1.302 28 H -0.257 1.257 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.162 0.838 35 H 0.164 0.836 36 H 0.413 0.587 37 H 0.420 0.580 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.051 0.949 41 H 0.071 0.929 42 H 0.362 0.638 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.574 -5.099 -18.234 22.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.125 4.125 3 H 0.079 0.921 4 C 0.004 3.996 5 N -0.331 5.331 6 C 0.374 3.626 7 O -0.441 6.441 8 C -0.371 4.371 9 C -0.106 4.106 10 C -0.102 4.102 11 C -0.388 4.388 12 C 0.379 3.621 13 N -0.393 5.393 14 O -0.451 6.451 15 S 0.546 5.454 16 C -0.025 4.025 17 C -0.182 4.182 18 C 0.074 3.926 19 H 0.075 0.925 20 N -0.390 5.390 21 C -0.347 4.347 22 H 0.084 0.916 23 C -0.253 4.253 24 N -0.634 5.634 25 Si 0.772 3.228 26 H -0.207 1.207 27 H -0.229 1.229 28 H -0.182 1.182 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.179 0.821 35 H 0.181 0.819 36 H 0.244 0.756 37 H 0.254 0.746 38 H 0.119 0.881 39 H 0.114 0.886 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.195 0.805 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.341 -5.885 -18.065 22.656 hybrid contribution 0.018 2.147 0.243 2.161 sum 12.360 -3.738 -17.822 22.008 Atomic orbital electron populations 1.21639 0.93490 1.02567 1.01601 1.21676 0.97060 0.99505 0.94248 0.92055 1.21739 0.77522 1.02106 0.98185 1.48082 1.07507 1.59788 1.17730 1.17336 0.84801 0.78282 0.82155 1.90794 1.74603 1.42482 1.36198 1.24837 0.97109 1.03786 1.11389 1.20620 0.90537 1.01001 0.98420 1.20627 0.97968 0.94496 0.97095 1.25188 0.98637 1.03388 1.11571 1.17157 0.86570 0.81108 0.77279 1.43549 1.14495 1.22965 1.58261 1.90855 1.33672 1.66296 1.54238 1.83834 0.92727 1.20060 1.48823 1.22403 0.98471 0.98572 0.83014 1.22525 0.98292 1.00363 0.97069 1.20429 0.91493 0.95918 0.84785 0.92528 1.42809 1.78429 1.10085 1.07647 1.19019 1.33566 0.94758 0.87353 0.91637 1.25347 1.02830 1.01559 0.95517 1.69854 1.54522 1.37551 1.01511 0.85582 0.78570 0.82001 0.76620 1.20718 1.22870 1.18239 0.91962 0.93721 0.91232 0.89010 0.88883 0.82074 0.81873 0.75620 0.74594 0.88123 0.88640 0.92978 0.90995 0.80535 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.02 71.98 0.65 -2.88 16 2 C -0.10 -2.82 2.46 -10.72 -0.03 -2.85 16 3 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 4 C 0.13 2.87 5.72 86.36 0.49 3.37 16 5 N -0.60 -13.62 2.97 -822.26 -2.44 -16.06 16 6 C 0.59 14.65 7.59 86.59 0.66 15.31 16 7 O -0.56 -17.49 16.40 -4.11 -0.07 -17.56 16 8 C -0.25 -5.02 5.74 24.24 0.14 -4.88 16 9 C -0.07 -1.36 10.01 21.55 0.22 -1.14 16 10 C -0.07 -1.21 9.88 21.55 0.21 -0.99 16 11 C -0.27 -4.48 6.46 24.24 0.16 -4.32 16 12 C 0.59 10.65 8.08 86.59 0.70 11.35 16 13 N -0.83 -7.86 8.87 -176.07 -1.56 -9.42 16 14 O -0.57 -14.79 17.65 -4.11 -0.07 -14.86 16 15 S 0.28 3.75 18.58 -56.49 -1.05 2.70 16 16 C 0.10 2.01 5.54 86.51 0.48 2.49 16 17 C -0.14 -3.99 5.67 30.82 0.17 -3.82 16 18 C 0.18 5.86 2.19 45.02 0.10 5.96 16 19 H 0.06 1.87 8.08 -2.39 -0.02 1.85 16 20 N -0.75 -31.57 4.22 -322.81 -1.36 -32.93 16 21 C -0.22 -11.31 10.41 84.03 0.87 -10.44 16 22 H 0.07 3.71 8.06 -2.91 -0.02 3.69 16 23 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 24 N -0.98 -60.75 13.97 21.65 0.30 -60.45 16 25 Si 0.94 44.25 27.73 68.60 1.90 46.15 16 26 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 27 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 28 H -0.26 -11.04 6.52 99.48 0.65 -10.39 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.04 1.38 7.36 -2.39 -0.02 1.36 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.09 2.18 7.00 -2.39 -0.02 2.17 16 33 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.16 2.82 8.06 -2.91 -0.02 2.79 16 35 H 0.16 2.63 8.04 -2.91 -0.02 2.60 16 36 H 0.41 1.97 7.93 -92.71 -0.74 1.23 16 37 H 0.42 2.73 8.93 -92.71 -0.83 1.91 16 38 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.10 1.65 3.99 -18.68 -0.07 1.58 16 40 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 41 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.36 15.27 5.37 -92.71 -0.50 14.78 16 43 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -74.26 363.52 -0.16 -74.42 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: -1.10 Total: 23.82 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 5.29 Total: 4.18 kcal Atomic # 7 Polarization: -113.80 SS G_CDS: -5.06 Total: -118.86 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -0.14 Total: -32.41 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.90 Total: 46.15 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -1.05 Total: 2.70 kcal Total: -74.26 -0.16 -74.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036214244.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.474 kcal (2) G-P(sol) polarization free energy of solvation -74.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds