Wall clock time and date at job start Tue Mar 31 2020 20:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.49443 * 2 1 4 4 C 1.53621 * 109.45747 * 120.20199 * 2 1 3 5 5 N 1.46924 * 108.54419 * 174.74182 * 4 2 1 6 6 C 1.34775 * 120.63217 * 126.37164 * 5 4 2 7 7 O 1.21625 * 120.00099 * 3.31911 * 6 5 4 8 8 C 1.47168 * 120.00232 * 183.32247 * 6 5 4 9 9 C 1.36616 * 125.16667 * 134.30973 * 8 6 5 10 10 C 1.36789 * 114.74837 * 180.26589 * 9 8 6 11 11 C 1.36613 * 114.74495 * 359.97438 * 10 9 8 12 12 C 1.47171 * 125.15993 * 180.02562 * 11 10 9 13 13 N 1.34773 * 120.00026 * 180.02562 * 12 11 10 14 14 O 1.21623 * 120.00134 * 0.02562 * 12 11 10 15 15 S 1.75834 * 109.67826 * 0.02562 * 11 10 9 16 16 C 1.46927 * 118.73781 * 306.09464 * 5 4 2 17 17 C 1.53194 * 108.77459 * 53.86398 * 16 5 4 18 18 C 1.53042 * 109.49928 * 239.93171 * 2 1 3 19 19 H 1.08993 * 109.45922 * 298.67131 * 18 2 1 20 20 N 1.46497 * 109.45761 * 58.63250 * 18 2 1 21 21 C 1.36936 * 119.99884 * 205.07033 * 20 18 2 22 22 H 1.07999 * 120.00162 * 359.97438 * 21 20 18 23 23 C 1.38809 * 120.00291 * 180.02562 * 21 20 18 24 24 N 1.31616 * 120.00435 * 179.97438 * 23 21 20 25 25 Si 1.86808 * 119.99899 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.46784 * 90.00289 * 25 23 21 27 27 H 1.48500 * 109.47038 * 210.00073 * 25 23 21 28 28 H 1.48501 * 109.47123 * 330.00402 * 25 23 21 29 29 H 1.08999 * 109.47325 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47007 * 300.06981 * 1 2 3 31 31 H 1.09004 * 109.47104 * 60.06559 * 1 2 3 32 32 H 1.09003 * 109.74158 * 55.00766 * 4 2 1 33 33 H 1.08994 * 109.66788 * 294.43706 * 4 2 1 34 34 H 1.08000 * 122.61855 * 0.24533 * 9 8 6 35 35 H 1.08001 * 122.62589 * 180.02562 * 10 9 8 36 36 H 0.97001 * 119.99955 * 0.02562 * 13 12 11 37 37 H 0.96998 * 120.00442 * 180.02562 * 13 12 11 38 38 H 1.09003 * 109.58937 * 173.64678 * 16 5 4 39 39 H 1.08998 * 109.59309 * 294.07262 * 16 5 4 40 40 H 1.08998 * 109.50295 * 65.31229 * 17 16 5 41 41 H 1.09001 * 109.50016 * 185.41738 * 17 16 5 42 42 H 0.96999 * 120.00246 * 25.06556 * 20 18 2 43 43 H 0.97001 * 120.00315 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0417 -0.7287 1.2519 5 7 3.5052 -0.8282 1.1691 6 6 4.2818 -0.3852 2.1776 7 8 3.7714 0.0470 3.1935 8 6 5.7474 -0.4243 2.0497 9 6 6.5935 0.5967 2.3784 10 6 7.9190 0.3322 2.1682 11 6 8.1813 -0.9102 1.6643 12 6 9.5213 -1.4330 1.3532 13 7 9.6604 -2.6785 0.8574 14 8 10.5033 -0.7411 1.5434 15 16 6.6748 -1.7899 1.4439 16 6 4.1059 -1.4255 -0.0314 17 6 3.5709 -0.6939 -1.2665 18 6 2.0408 -0.7228 -1.2485 19 1 1.6973 -1.7571 -1.2354 20 7 1.5260 -0.0528 -2.4452 21 6 1.3945 -0.7495 -3.6168 22 1 1.6708 -1.7927 -3.6587 23 6 0.9072 -0.1146 -4.7509 24 7 0.7813 -0.7840 -5.8771 25 14 0.4299 1.6901 -4.6788 26 1 1.6081 2.5276 -5.0192 27 1 -0.6615 1.9526 -5.6509 28 1 -0.0360 2.0245 -3.3090 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5149 0.8893 31 1 -0.3633 0.5128 -0.8906 32 1 1.6096 -1.7283 1.2985 33 1 1.7636 -0.1662 2.1431 34 1 6.2431 1.5390 2.7730 35 1 8.6972 1.0491 2.3845 36 1 8.8772 -3.2302 0.7054 37 1 10.5436 -3.0233 0.6527 38 1 5.1902 -1.3229 0.0128 39 1 3.8387 -2.4807 -0.0874 40 1 3.9154 0.3401 -1.2547 41 1 3.9334 -1.1884 -2.1677 42 1 1.2781 0.8842 -2.4077 43 1 0.4404 -0.3404 -6.6696 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036214251.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:57 Heat of formation + Delta-G solvation = -46.593663 kcal Electronic energy + Delta-G solvation = -26777.247146 eV Core-core repulsion = 22948.381257 eV Total energy + Delta-G solvation = -3828.865889 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.47159 -40.67411 -39.29043 -38.05825 -36.35517 -34.89557 -34.54005 -33.25646 -31.63599 -31.14386 -28.14482 -27.13660 -26.04980 -24.24725 -23.13742 -22.92531 -22.11475 -21.15066 -20.21450 -19.58819 -19.11533 -18.22014 -18.01752 -17.09692 -16.84124 -16.76197 -16.26518 -16.06377 -15.98572 -15.75957 -15.31964 -15.00940 -14.88286 -14.50594 -14.33960 -14.18805 -14.00820 -13.63841 -13.53194 -13.35195 -12.96440 -12.94218 -12.86516 -12.45858 -12.32217 -12.08306 -12.04933 -11.88431 -11.75725 -11.53739 -11.25386 -11.19058 -10.91676 -10.89517 -10.08743 -9.78494 -9.60386 -9.24044 -7.98617 -5.30297 -1.00817 0.05749 0.46572 1.00666 1.39345 1.40453 1.47853 1.57290 1.90489 2.04953 2.33446 2.50477 3.24225 3.33620 3.52593 3.75025 3.80565 3.91524 3.98402 4.04692 4.19992 4.24430 4.31953 4.43937 4.55327 4.70003 4.73522 4.79357 4.81086 4.88426 4.89946 5.00569 5.11653 5.15155 5.23544 5.37011 5.42782 5.57272 5.71940 5.82218 6.15807 6.17342 6.25566 6.84658 7.07716 7.11891 7.88884 8.06463 9.22771 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.014038 B = 0.003102 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.042862 B = 9023.967484 C =10144.081505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.104 4.104 3 H 0.063 0.937 4 C 0.127 3.873 5 N -0.596 5.596 6 C 0.587 3.413 7 O -0.559 6.559 8 C -0.244 4.244 9 C -0.079 4.079 10 C -0.065 4.065 11 C -0.265 4.265 12 C 0.595 3.405 13 N -0.828 5.828 14 O -0.570 6.570 15 S 0.269 5.731 16 C 0.100 3.900 17 C -0.142 4.142 18 C 0.182 3.818 19 H 0.054 0.946 20 N -0.747 5.747 21 C -0.216 4.216 22 H 0.064 0.936 23 C -0.061 4.061 24 N -0.984 5.984 25 Si 0.944 3.056 26 H -0.284 1.284 27 H -0.301 1.301 28 H -0.253 1.253 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.043 0.957 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.162 0.838 35 H 0.165 0.835 36 H 0.413 0.587 37 H 0.421 0.579 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.362 0.638 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.054 -4.280 18.438 22.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.124 4.124 3 H 0.082 0.918 4 C 0.005 3.995 5 N -0.327 5.327 6 C 0.374 3.626 7 O -0.440 6.440 8 C -0.365 4.365 9 C -0.112 4.112 10 C -0.098 4.098 11 C -0.387 4.387 12 C 0.379 3.621 13 N -0.393 5.393 14 O -0.450 6.450 15 S 0.538 5.462 16 C -0.024 4.024 17 C -0.183 4.183 18 C 0.074 3.926 19 H 0.072 0.928 20 N -0.389 5.389 21 C -0.347 4.347 22 H 0.082 0.918 23 C -0.253 4.253 24 N -0.635 5.635 25 Si 0.772 3.228 26 H -0.211 1.211 27 H -0.228 1.228 28 H -0.177 1.177 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.180 0.820 35 H 0.182 0.818 36 H 0.244 0.756 37 H 0.254 0.746 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.195 0.805 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.904 -5.207 18.448 23.107 hybrid contribution -0.105 2.224 -0.453 2.272 sum 12.799 -2.984 17.995 22.283 Atomic orbital electron populations 1.21640 0.93584 1.02494 1.01584 1.21759 0.96976 0.99540 0.94157 0.91803 1.21828 0.77525 1.02068 0.98127 1.48115 1.07454 1.59426 1.17736 1.17336 0.84990 0.77324 0.82931 1.90803 1.74747 1.48317 1.30093 1.24815 0.97190 1.01876 1.12649 1.20581 0.91362 1.00116 0.99129 1.20630 0.96748 0.95717 0.96746 1.25045 0.97984 1.01460 1.14165 1.17141 0.86400 0.82209 0.76308 1.43545 1.14498 1.14757 1.66486 1.90856 1.40013 1.59123 1.55047 1.83753 0.92211 1.13535 1.56666 1.22290 0.98805 0.98406 0.82852 1.22451 0.98198 1.00523 0.97159 1.20427 0.91568 0.95833 0.84804 0.92755 1.42791 1.78316 1.10187 1.07651 1.19010 1.33664 0.94799 0.87262 0.91758 1.25354 1.02793 1.01645 0.95489 1.69855 1.54542 1.37583 1.01502 0.85578 0.77480 0.81809 0.77893 1.21106 1.22820 1.17735 0.92063 0.91210 0.93781 0.89065 0.88938 0.82044 0.81798 0.75636 0.74587 0.88629 0.88402 0.92795 0.91147 0.80493 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.03 71.98 0.65 -2.91 16 2 C -0.10 -2.80 2.47 -10.57 -0.03 -2.83 16 3 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 4 C 0.13 2.89 5.74 86.51 0.50 3.38 16 5 N -0.60 -13.57 2.97 -822.25 -2.44 -16.01 16 6 C 0.59 14.59 7.55 86.59 0.65 15.25 16 7 O -0.56 -17.37 16.51 -4.11 -0.07 -17.44 16 8 C -0.24 -4.92 5.49 24.24 0.13 -4.79 16 9 C -0.08 -1.48 10.11 21.55 0.22 -1.27 16 10 C -0.07 -1.15 9.88 21.55 0.21 -0.94 16 11 C -0.27 -4.51 6.46 24.24 0.16 -4.35 16 12 C 0.60 10.77 8.07 86.59 0.70 11.47 16 13 N -0.83 -7.95 8.87 -176.07 -1.56 -9.51 16 14 O -0.57 -14.90 17.65 -4.10 -0.07 -14.97 16 15 S 0.27 3.72 19.16 -56.49 -1.08 2.63 16 16 C 0.10 2.05 5.88 86.36 0.51 2.56 16 17 C -0.14 -4.02 5.66 30.67 0.17 -3.85 16 18 C 0.18 5.88 2.19 45.02 0.10 5.98 16 19 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 20 N -0.75 -31.59 4.21 -322.82 -1.36 -32.95 16 21 C -0.22 -11.38 10.41 84.03 0.87 -10.50 16 22 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 23 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 24 N -0.98 -60.97 13.97 21.65 0.30 -60.66 16 25 Si 0.94 44.22 27.74 68.60 1.90 46.12 16 26 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 27 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 28 H -0.25 -10.67 6.52 99.48 0.65 -10.02 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.04 1.38 7.36 -2.38 -0.02 1.36 16 32 H 0.09 1.79 8.14 -2.39 -0.02 1.78 16 33 H 0.09 2.19 7.02 -2.39 -0.02 2.18 16 34 H 0.16 2.77 8.06 -2.91 -0.02 2.74 16 35 H 0.16 2.67 8.04 -2.91 -0.02 2.64 16 36 H 0.41 1.99 7.93 -92.71 -0.74 1.25 16 37 H 0.42 2.77 8.93 -92.71 -0.83 1.94 16 38 H 0.10 1.68 4.01 -16.06 -0.06 1.61 16 39 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 41 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.36 15.23 5.37 -92.71 -0.50 14.74 16 43 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -74.35 364.39 -0.16 -74.51 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: -1.09 Total: 24.07 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 5.31 Total: 4.21 kcal Atomic # 7 Polarization: -114.08 SS G_CDS: -5.06 Total: -119.13 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -0.14 Total: -32.41 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.90 Total: 46.12 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -1.08 Total: 2.63 kcal Total: -74.35 -0.16 -74.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036214251.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.915 kcal (2) G-P(sol) polarization free energy of solvation -74.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds