Wall clock time and date at job start Tue Mar 31 2020 20:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.52652 * 2 1 4 4 C 1.53196 * 109.49530 * 120.08324 * 2 1 3 5 5 N 1.46926 * 108.77449 * 174.58460 * 4 2 1 6 6 C 1.34779 * 120.63356 * 126.36660 * 5 4 2 7 7 O 1.21625 * 119.99574 * 353.69774 * 6 5 4 8 8 C 1.47172 * 120.00197 * 173.69694 * 6 5 4 9 9 C 1.36613 * 125.16060 * 148.45323 * 8 6 5 10 10 C 1.36789 * 114.74408 * 179.78496 * 9 8 6 11 11 C 1.36621 * 114.74614 * 0.50642 * 10 9 8 12 12 C 1.47168 * 125.16364 * 179.75890 * 11 10 9 13 13 N 1.34779 * 120.00178 * 179.97438 * 12 11 10 14 14 O 1.21628 * 119.99767 * 359.97438 * 12 11 10 15 15 S 1.75830 * 125.16000 * 328.76023 * 8 6 5 16 16 C 1.46931 * 118.73960 * 306.38904 * 5 4 2 17 17 C 1.53198 * 108.77226 * 53.60968 * 16 5 4 18 18 C 1.53040 * 109.31249 * 305.36178 * 17 16 5 19 19 H 1.09002 * 109.45933 * 181.38432 * 18 17 16 20 20 N 1.46499 * 109.46254 * 301.35213 * 18 17 16 21 21 C 1.36941 * 119.99533 * 274.99391 * 20 18 17 22 22 H 1.07995 * 120.00018 * 0.02562 * 21 20 18 23 23 C 1.38814 * 119.99810 * 180.02562 * 21 20 18 24 24 N 1.31614 * 120.00054 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99922 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47196 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.47030 * 120.00062 * 25 23 21 28 28 H 1.48500 * 109.46704 * 239.99983 * 25 23 21 29 29 H 1.09001 * 109.47275 * 180.08347 * 1 2 3 30 30 H 1.09001 * 109.46650 * 300.08262 * 1 2 3 31 31 H 1.08998 * 109.47236 * 60.07921 * 1 2 3 32 32 H 1.08994 * 109.59179 * 54.79884 * 4 2 1 33 33 H 1.08995 * 109.70310 * 294.43640 * 4 2 1 34 34 H 1.08001 * 122.62651 * 359.97438 * 9 8 6 35 35 H 1.08002 * 122.63225 * 180.22949 * 10 9 8 36 36 H 0.97002 * 119.99342 * 0.02562 * 13 12 11 37 37 H 0.96992 * 120.00102 * 179.97438 * 13 12 11 38 38 H 1.09000 * 109.58570 * 293.82045 * 16 5 4 39 39 H 1.08997 * 109.58828 * 173.39672 * 16 5 4 40 40 H 1.09003 * 109.49543 * 185.41590 * 17 16 5 41 41 H 1.08999 * 109.52480 * 65.33323 * 17 16 5 42 42 H 0.96996 * 120.00450 * 95.00190 * 20 18 17 43 43 H 0.96994 * 120.00239 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 1.2496 5 7 3.5045 -0.8293 1.1696 6 6 4.2812 -0.3858 2.1779 7 8 3.7818 0.2100 3.1133 8 6 5.7334 -0.6223 2.1471 9 6 6.6772 0.2075 2.6827 10 6 7.9674 -0.2228 2.5363 11 6 8.1030 -1.4070 1.8687 12 6 9.3819 -2.0752 1.5793 13 7 9.3947 -3.2457 0.9112 14 8 10.4274 -1.5711 1.9431 15 16 6.5175 -2.0121 1.4085 16 6 4.1052 -1.4269 -0.0308 17 6 3.5708 -0.6951 -1.2660 18 6 2.0408 -0.7232 -1.2484 19 1 1.6581 -0.2245 -2.1389 20 7 1.5782 -2.1131 -1.2307 21 6 1.4466 -2.8058 -2.4047 22 1 1.6842 -2.3276 -3.3434 23 6 1.0079 -4.1227 -2.3881 24 7 0.7188 -4.7057 -1.2440 25 14 0.8290 -5.0678 -3.9894 26 1 1.2158 -4.1938 -5.1259 27 1 1.7118 -6.2616 -3.9608 28 1 -0.5823 -5.4996 -4.1542 29 1 -0.3634 -1.0277 0.0015 30 1 -0.3633 0.5151 0.8893 31 1 -0.3633 0.5126 -0.8907 32 1 1.6052 -1.7216 1.2981 33 1 1.7637 -0.1602 2.1402 34 1 6.4243 1.1294 3.1853 35 1 8.8130 0.3324 2.9147 36 1 8.5609 -3.6474 0.6208 37 1 10.2376 -3.6859 0.7202 38 1 3.8375 -2.4820 -0.0867 39 1 5.1895 -1.3248 0.0137 40 1 3.9333 -1.1898 -2.1671 41 1 3.9159 0.3388 -1.2546 42 1 1.3651 -2.5427 -0.3876 43 1 0.4119 -5.6257 -1.2324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036214257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:00 Heat of formation + Delta-G solvation = -23.395719 kcal Electronic energy + Delta-G solvation = -27183.065127 eV Core-core repulsion = 23355.205177 eV Total energy + Delta-G solvation = -3827.859951 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.24686 -39.76631 -38.08106 -36.98691 -34.45591 -34.06057 -32.98605 -31.54284 -30.23366 -29.28833 -26.98460 -25.74007 -24.63216 -23.58579 -22.10124 -21.79803 -21.07268 -19.38897 -18.83215 -17.89745 -17.51283 -17.22514 -16.94074 -15.93288 -15.79594 -15.25109 -15.07646 -14.85910 -14.68417 -14.31064 -14.08801 -13.76706 -13.41838 -13.24683 -13.16465 -12.90340 -12.63798 -12.53432 -12.24216 -11.68582 -11.53602 -11.32725 -11.23263 -10.99042 -10.88984 -10.64067 -10.59515 -10.50212 -10.22950 -10.11444 -9.95653 -9.93202 -9.64126 -9.11602 -9.05151 -8.66709 -8.40248 -7.06660 -5.87256 -3.16106 -0.09301 1.03495 1.43999 1.90519 2.82402 2.94195 3.10150 3.13751 3.35210 3.42135 3.43871 4.38486 4.50158 4.56712 4.95123 5.02152 5.11411 5.19082 5.26557 5.39471 5.46920 5.60784 5.64861 5.70136 5.74614 5.85757 5.93543 5.96575 6.00146 6.11663 6.22405 6.27919 6.37199 6.41445 6.49988 6.57823 6.65769 6.81150 6.88256 6.89860 7.45485 7.61987 7.82418 8.09443 8.31028 9.43065 9.98583 10.33827 11.35042 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.011997 B = 0.003700 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.292740 B = 7566.155434 C = 9337.616877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 H 0.067 0.933 4 C 0.120 3.880 5 N -0.593 5.593 6 C 0.582 3.418 7 O -0.532 6.532 8 C -0.215 4.215 9 C -0.083 4.083 10 C -0.062 4.062 11 C -0.268 4.268 12 C 0.598 3.402 13 N -0.849 5.849 14 O -0.532 6.532 15 S 0.226 5.774 16 C 0.100 3.900 17 C -0.147 4.147 18 C 0.178 3.822 19 H 0.054 0.946 20 N -0.719 5.719 21 C -0.239 4.239 22 H 0.071 0.929 23 C -0.010 4.010 24 N -0.931 5.931 25 Si 0.903 3.097 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.402 0.598 37 H 0.410 0.590 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.051 0.949 42 H 0.384 0.616 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.681 6.441 4.581 14.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 H 0.086 0.914 4 C -0.001 4.001 5 N -0.325 5.325 6 C 0.368 3.632 7 O -0.411 6.411 8 C -0.337 4.337 9 C -0.116 4.116 10 C -0.096 4.096 11 C -0.389 4.389 12 C 0.382 3.618 13 N -0.413 5.413 14 O -0.410 6.410 15 S 0.496 5.504 16 C -0.023 4.023 17 C -0.188 4.188 18 C 0.068 3.932 19 H 0.072 0.928 20 N -0.361 5.361 21 C -0.370 4.370 22 H 0.089 0.911 23 C -0.206 4.206 24 N -0.580 5.580 25 Si 0.735 3.265 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.219 1.219 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.175 0.825 35 H 0.174 0.826 36 H 0.231 0.769 37 H 0.242 0.758 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.069 0.931 42 H 0.219 0.781 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.439 5.798 4.404 13.559 hybrid contribution 0.296 -0.019 -0.240 0.381 sum 11.734 5.779 4.164 13.727 Atomic orbital electron populations 1.21666 0.94012 1.03256 1.00582 1.21714 0.96671 0.98952 0.95518 0.91429 1.21746 0.77395 1.01938 0.99069 1.48020 1.07489 1.59390 1.17560 1.17103 0.83962 0.79300 0.82821 1.90798 1.73744 1.41633 1.34940 1.24983 0.98166 1.01451 1.09076 1.20497 0.90518 1.01026 0.99524 1.20513 0.97895 0.94249 0.96917 1.25070 0.98213 1.03397 1.12238 1.17058 0.87111 0.80453 0.77143 1.43697 1.13207 1.24147 1.60208 1.90855 1.32559 1.65036 1.52516 1.84481 0.94074 1.21926 1.49959 1.22147 0.96266 0.99626 0.84268 1.22512 1.00613 0.98722 0.96951 1.20228 0.90573 0.87437 0.95000 0.92841 1.42491 1.78988 1.07681 1.06980 1.19263 1.37290 0.93870 0.86564 0.91146 1.24695 1.02147 0.97179 0.96586 1.69648 1.51630 1.13062 1.23620 0.86182 0.77352 0.79958 0.83051 1.20619 1.21964 1.21942 0.90986 0.93671 0.92696 0.90200 0.89432 0.82522 0.82636 0.76933 0.75847 0.88974 0.91041 0.90388 0.93061 0.78116 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.05 37.16 0.34 -1.74 16 2 C -0.11 -1.67 2.67 -90.50 -0.24 -1.91 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.12 1.91 5.43 -3.71 -0.02 1.89 16 5 N -0.59 -9.12 2.97 -174.13 -0.52 -9.64 16 6 C 0.58 9.11 7.59 -12.63 -0.10 9.01 16 7 O -0.53 -9.68 16.41 5.26 0.09 -9.59 16 8 C -0.21 -2.79 5.72 -36.54 -0.21 -3.00 16 9 C -0.08 -0.95 10.01 -40.69 -0.41 -1.36 16 10 C -0.06 -0.67 9.88 -40.69 -0.40 -1.07 16 11 C -0.27 -2.95 6.46 -36.54 -0.24 -3.18 16 12 C 0.60 6.72 8.08 -12.63 -0.10 6.62 16 13 N -0.85 -6.44 8.87 30.37 0.27 -6.17 16 14 O -0.53 -7.72 17.65 5.25 0.09 -7.63 16 15 S 0.23 2.43 18.61 -107.50 -2.00 0.43 16 16 C 0.10 1.48 5.26 -3.71 -0.02 1.46 16 17 C -0.15 -2.26 5.78 -26.61 -0.15 -2.41 16 18 C 0.18 3.10 2.53 -67.89 -0.17 2.93 16 19 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 20 N -0.72 -15.52 3.64 -53.38 -0.19 -15.72 16 21 C -0.24 -5.91 9.93 -15.06 -0.15 -6.06 16 22 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 24 N -0.93 -25.86 13.06 55.49 0.72 -25.14 16 25 Si 0.90 20.90 29.55 -169.99 -5.02 15.88 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H 0.07 1.27 7.54 -51.93 -0.39 0.87 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.39 6.64 -51.93 -0.34 1.04 16 33 H 0.09 1.39 7.00 -51.93 -0.36 1.02 16 34 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.16 1.49 8.04 -52.49 -0.42 1.06 16 36 H 0.40 2.41 7.93 -40.82 -0.32 2.08 16 37 H 0.41 2.39 8.93 -40.82 -0.36 2.02 16 38 H 0.09 1.57 7.74 -51.93 -0.40 1.17 16 39 H 0.07 0.92 4.01 -26.63 -0.11 0.81 16 40 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.38 8.89 5.93 -40.82 -0.24 8.65 16 43 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 362.70 15.07 5.47 5.47 Total: -1.00 -31.03 362.70 -8.53 -39.56 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -5.46 Total: 11.73 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -1.97 Total: 0.82 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 0.28 Total: -56.66 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: 0.18 Total: -17.22 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -2.00 Total: 0.43 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.03 -8.53 -39.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036214257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.164 kcal (2) G-P(sol) polarization free energy of solvation -31.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds