Wall clock time and date at job start Tue Mar 31 2020 20:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.49367 * 2 1 4 4 C 1.53187 * 109.49707 * 239.93374 * 2 1 3 5 5 N 1.46934 * 108.77342 * 185.41079 * 4 2 1 6 6 C 1.34774 * 120.63117 * 233.58910 * 5 4 2 7 7 O 1.21626 * 120.00264 * 356.41077 * 6 5 4 8 8 C 1.47169 * 119.99977 * 176.41691 * 6 5 4 9 9 C 1.36608 * 125.15913 * 225.67869 * 8 6 5 10 10 C 1.36810 * 114.74375 * 179.97438 * 9 8 6 11 11 C 1.36608 * 114.74483 * 0.02562 * 10 9 8 12 12 C 1.47161 * 125.16483 * 180.02562 * 11 10 9 13 13 N 1.34773 * 120.00498 * 179.97438 * 12 11 10 14 14 O 1.21626 * 119.99782 * 359.97438 * 12 11 10 15 15 S 1.75832 * 125.16168 * 45.37069 * 8 6 5 16 16 C 1.46924 * 118.73380 * 53.60905 * 5 4 2 17 17 C 1.53188 * 108.78090 * 306.38807 * 16 5 4 18 18 C 1.53041 * 109.49714 * 120.09219 * 2 1 3 19 19 H 1.08999 * 109.46123 * 301.34507 * 18 2 1 20 20 N 1.46504 * 109.45411 * 61.30057 * 18 2 1 21 21 C 1.36936 * 119.99513 * 205.06494 * 20 18 2 22 22 H 1.08002 * 120.00545 * 0.02562 * 21 20 18 23 23 C 1.38814 * 120.00015 * 179.97438 * 21 20 18 24 24 N 1.31625 * 119.99774 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00191 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47049 * 90.00195 * 25 23 21 27 27 H 1.48499 * 109.47154 * 210.00238 * 25 23 21 28 28 H 1.48502 * 109.46870 * 329.99958 * 25 23 21 29 29 H 1.09007 * 109.47010 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47500 * 300.06505 * 1 2 3 31 31 H 1.09000 * 109.47104 * 60.06781 * 1 2 3 32 32 H 1.09001 * 109.58693 * 65.62783 * 4 2 1 33 33 H 1.08993 * 109.59192 * 305.19836 * 4 2 1 34 34 H 1.07997 * 122.63302 * 359.97438 * 9 8 6 35 35 H 1.08000 * 122.62563 * 179.97438 * 10 9 8 36 36 H 0.97003 * 120.00070 * 359.97438 * 13 12 11 37 37 H 0.96999 * 120.00098 * 179.97438 * 13 12 11 38 38 H 1.09005 * 109.58407 * 186.60061 * 16 5 4 39 39 H 1.09001 * 109.58564 * 66.18062 * 16 5 4 40 40 H 1.08994 * 109.49862 * 174.58486 * 17 16 5 41 41 H 1.08998 * 109.50001 * 294.68845 * 17 16 5 42 42 H 0.96995 * 120.00617 * 25.06469 * 20 18 2 43 43 H 0.97005 * 119.99526 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2497 5 7 3.5047 -0.8287 -1.1697 6 6 4.2811 -0.3857 -2.1783 7 8 3.7707 0.0469 -3.1940 8 6 5.7467 -0.4254 -2.0507 9 6 6.5930 0.5954 -2.3794 10 6 7.9190 0.3285 -2.1743 11 6 8.1813 -0.9156 -1.6747 12 6 9.5215 -1.4407 -1.3684 13 7 9.6605 -2.6878 -0.8766 14 8 10.5037 -0.7492 -1.5591 15 16 6.6738 -1.7912 -1.4448 16 6 4.1052 -1.4266 0.0305 17 6 3.5709 -0.6952 1.2659 18 6 2.0408 -0.7233 1.2482 19 1 1.6580 -0.2250 2.1389 20 7 1.5783 -2.1133 1.2302 21 6 1.4468 -2.8063 2.4039 22 1 1.6836 -2.3281 3.3429 23 6 1.0081 -4.1232 2.3870 24 7 0.7190 -4.7059 1.2427 25 14 0.8280 -5.0684 3.9882 26 1 -0.5442 -4.8790 4.5231 27 1 1.0677 -6.5128 3.7401 28 1 1.8176 -4.5647 4.9742 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5148 0.8893 31 1 -0.3633 0.5128 -0.8906 32 1 1.7638 -0.1573 -2.1389 33 1 1.6053 -1.7212 -1.2985 34 1 6.2427 1.5391 -2.7706 35 1 8.6975 1.0449 -2.3913 36 1 8.8771 -3.2392 -0.7241 37 1 10.5439 -3.0340 -0.6751 38 1 5.1896 -1.3245 -0.0140 39 1 3.8375 -2.4817 0.0862 40 1 3.9334 -1.1902 2.1668 41 1 3.9159 0.3386 1.2543 42 1 1.3653 -2.5428 0.3870 43 1 0.4128 -5.6263 1.2309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036214261.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:02 Heat of formation + Delta-G solvation = -23.821202 kcal Electronic energy + Delta-G solvation = -27159.349293 eV Core-core repulsion = 23331.470892 eV Total energy + Delta-G solvation = -3827.878401 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.25340 -39.77701 -38.06873 -37.02505 -34.43701 -34.07791 -32.97341 -31.52892 -30.26331 -29.27213 -26.98587 -25.72589 -24.64135 -23.57215 -22.13401 -21.77947 -21.07791 -19.41502 -18.80117 -17.91028 -17.49578 -17.25595 -16.94313 -15.94197 -15.90270 -15.22169 -15.06372 -14.88643 -14.64002 -14.31712 -14.07126 -13.78872 -13.40053 -13.28541 -13.10931 -12.95131 -12.62795 -12.51153 -12.23290 -11.67071 -11.52287 -11.33637 -11.25792 -10.97585 -10.87892 -10.63937 -10.59223 -10.54023 -10.25932 -10.13121 -9.96518 -9.93426 -9.63309 -9.11616 -9.04001 -8.69631 -8.40475 -7.05846 -5.86271 -3.15149 -0.07032 0.97915 1.40162 1.92824 2.77600 2.89305 3.08408 3.13797 3.36367 3.42401 3.43792 4.37481 4.50949 4.54969 4.93273 5.04368 5.09754 5.19957 5.26559 5.41107 5.48234 5.60474 5.63464 5.70578 5.73904 5.84851 5.95401 5.96441 5.98542 6.12278 6.23154 6.29154 6.35535 6.41445 6.49849 6.58732 6.66156 6.82119 6.86463 6.90001 7.45402 7.62138 7.80865 8.08733 8.32019 9.43926 9.99506 10.34718 11.35943 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012346 B = 0.003596 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.330267 B = 7785.627235 C = 9411.647944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 H 0.067 0.933 4 C 0.120 3.880 5 N -0.590 5.590 6 C 0.581 3.419 7 O -0.532 6.532 8 C -0.207 4.207 9 C -0.089 4.089 10 C -0.058 4.058 11 C -0.266 4.266 12 C 0.599 3.401 13 N -0.849 5.849 14 O -0.531 6.531 15 S 0.218 5.782 16 C 0.101 3.899 17 C -0.148 4.148 18 C 0.178 3.822 19 H 0.053 0.947 20 N -0.719 5.719 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.010 4.010 24 N -0.932 5.932 25 Si 0.904 3.096 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.283 1.283 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.156 0.844 35 H 0.157 0.843 36 H 0.401 0.599 37 H 0.410 0.590 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.050 0.950 42 H 0.384 0.616 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.128 7.071 -4.696 14.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 H 0.085 0.915 4 C -0.002 4.002 5 N -0.321 5.321 6 C 0.366 3.634 7 O -0.410 6.410 8 C -0.329 4.329 9 C -0.122 4.122 10 C -0.092 4.092 11 C -0.387 4.387 12 C 0.383 3.617 13 N -0.413 5.413 14 O -0.409 6.409 15 S 0.487 5.513 16 C -0.022 4.022 17 C -0.189 4.189 18 C 0.068 3.932 19 H 0.071 0.929 20 N -0.361 5.361 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.206 4.206 24 N -0.580 5.580 25 Si 0.735 3.265 26 H -0.218 1.218 27 H -0.219 1.219 28 H -0.208 1.208 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.174 0.826 35 H 0.175 0.825 36 H 0.230 0.770 37 H 0.242 0.758 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.069 0.931 42 H 0.219 0.781 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.973 6.290 -4.683 14.312 hybrid contribution 0.185 0.114 0.413 0.467 sum 12.157 6.404 -4.270 14.389 Atomic orbital electron populations 1.21666 0.93986 1.03292 1.00570 1.21720 0.96688 0.98903 0.95563 0.91469 1.21750 0.77434 1.02030 0.98948 1.48052 1.07462 1.58833 1.17753 1.17123 0.84119 0.78523 0.83611 1.90810 1.73831 1.47495 1.28879 1.24949 0.98182 0.99827 1.09944 1.20451 0.91309 0.99994 1.00401 1.20514 0.96725 0.95253 0.96685 1.24918 0.97561 1.01293 1.14926 1.17038 0.86875 0.81506 0.76285 1.43694 1.13222 1.15893 1.68474 1.90858 1.38927 1.58008 1.53118 1.84352 0.93711 1.15746 1.57469 1.22136 0.96561 0.99453 0.84082 1.22515 1.00564 0.98713 0.97106 1.20225 0.90628 0.87432 0.94951 0.92877 1.42481 1.79002 1.07674 1.06968 1.19216 1.37409 0.93876 0.86545 0.91212 1.24699 1.02140 0.97178 0.96589 1.69649 1.51578 1.13111 1.23646 0.86247 0.77822 0.79361 0.83061 1.21794 1.21874 1.20827 0.90963 0.92681 0.93678 0.89480 0.90155 0.82624 0.82542 0.76974 0.75836 0.91090 0.88999 0.90446 0.93112 0.78110 0.93488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.05 37.16 0.34 -1.74 16 2 C -0.11 -1.67 2.67 -90.50 -0.24 -1.91 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.12 1.91 5.41 -3.71 -0.02 1.89 16 5 N -0.59 -9.10 2.97 -174.13 -0.52 -9.61 16 6 C 0.58 9.08 7.55 -12.64 -0.10 8.99 16 7 O -0.53 -9.73 16.51 5.25 0.09 -9.65 16 8 C -0.21 -2.68 5.49 -36.55 -0.20 -2.88 16 9 C -0.09 -1.01 10.11 -40.69 -0.41 -1.42 16 10 C -0.06 -0.62 9.88 -40.69 -0.40 -1.02 16 11 C -0.27 -2.88 6.46 -36.55 -0.24 -3.12 16 12 C 0.60 6.62 8.07 -12.64 -0.10 6.52 16 13 N -0.85 -6.25 8.87 30.37 0.27 -5.98 16 14 O -0.53 -7.63 17.65 5.25 0.09 -7.53 16 15 S 0.22 2.31 19.16 -107.50 -2.06 0.25 16 16 C 0.10 1.51 5.62 -3.71 -0.02 1.48 16 17 C -0.15 -2.29 5.78 -26.61 -0.15 -2.44 16 18 C 0.18 3.11 2.53 -67.89 -0.17 2.94 16 19 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 20 N -0.72 -15.62 3.64 -53.38 -0.19 -15.82 16 21 C -0.24 -5.96 9.93 -15.06 -0.15 -6.11 16 22 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 24 N -0.93 -26.02 13.06 55.49 0.72 -25.29 16 25 Si 0.90 21.01 29.55 -169.99 -5.02 15.98 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H 0.07 1.27 7.53 -51.93 -0.39 0.88 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 1.38 7.02 -51.93 -0.36 1.01 16 33 H 0.08 1.41 6.64 -51.93 -0.34 1.07 16 34 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.16 1.47 8.04 -52.49 -0.42 1.04 16 36 H 0.40 2.29 7.93 -40.82 -0.32 1.97 16 37 H 0.41 2.30 8.93 -40.82 -0.36 1.93 16 38 H 0.07 0.92 4.01 -30.38 -0.12 0.79 16 39 H 0.09 1.59 7.74 -51.93 -0.40 1.19 16 40 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.38 8.96 5.92 -40.82 -0.24 8.72 16 43 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 363.54 15.07 5.48 5.48 Total: -1.00 -31.23 363.54 -8.59 -39.82 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -5.48 Total: 11.52 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -1.96 Total: 0.83 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 0.28 Total: -56.71 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: 0.18 Total: -17.18 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -2.06 Total: 0.25 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.23 -8.59 -39.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036214261.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.999 kcal (2) G-P(sol) polarization free energy of solvation -31.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds