Wall clock time and date at job start Tue Mar 31 2020 20:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.49919 * 2 1 4 4 C 1.53190 * 109.49533 * 120.06268 * 2 1 3 5 5 N 1.46924 * 108.77788 * 174.61766 * 4 2 1 6 6 C 1.34780 * 120.63246 * 126.36231 * 5 4 2 7 7 O 1.21680 * 119.99641 * 353.68571 * 6 5 4 8 8 C 1.46738 * 119.99836 * 173.67877 * 6 5 4 9 9 C 1.34877 * 125.05409 * 148.34121 * 8 6 5 10 10 C 1.38937 * 113.65198 * 179.80011 * 9 8 6 11 11 C 1.47335 * 122.95844 * 180.21328 * 10 9 8 12 12 N 1.34775 * 119.99882 * 180.26661 * 11 10 9 13 13 O 1.21617 * 120.00490 * 0.27199 * 11 10 9 14 14 C 1.36658 * 114.07772 * 0.48260 * 10 9 8 15 15 S 1.70598 * 110.53162 * 359.73699 * 14 10 9 16 16 C 1.46927 * 118.73576 * 306.64788 * 5 4 2 17 17 C 1.52757 * 109.01363 * 53.30536 * 16 5 4 18 18 C 1.53036 * 109.52254 * 239.91638 * 2 1 3 19 19 H 1.09001 * 109.46376 * 298.68882 * 18 2 1 20 20 N 1.46501 * 109.46143 * 58.65167 * 18 2 1 21 21 C 1.36940 * 119.99906 * 204.99914 * 20 18 2 22 22 H 1.07999 * 119.99498 * 359.97438 * 21 20 18 23 23 C 1.38802 * 120.00031 * 179.97438 * 21 20 18 24 24 N 1.31622 * 120.00005 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00168 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47130 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47452 * 120.00205 * 25 23 21 28 28 H 1.48507 * 109.46804 * 239.99975 * 25 23 21 29 29 H 1.09000 * 109.47142 * 299.94212 * 1 2 3 30 30 H 1.09001 * 109.46909 * 59.93191 * 1 2 3 31 31 H 1.08999 * 109.47334 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.58944 * 54.83186 * 4 2 1 33 33 H 1.09005 * 109.58521 * 294.40391 * 4 2 1 34 34 H 1.08001 * 123.16872 * 359.97438 * 9 8 6 35 35 H 0.96998 * 119.99937 * 359.97438 * 12 11 10 36 36 H 0.96998 * 119.99959 * 180.02562 * 12 11 10 37 37 H 1.08001 * 124.73567 * 179.69894 * 14 10 9 38 38 H 1.09007 * 109.58687 * 173.14142 * 16 5 4 39 39 H 1.09002 * 109.58749 * 293.56181 * 16 5 4 40 40 H 1.08995 * 109.57127 * 185.55200 * 17 16 5 41 41 H 1.09011 * 109.35845 * 65.49453 * 17 16 5 42 42 H 0.96996 * 120.00010 * 24.99554 * 20 18 2 43 43 H 0.97005 * 120.00209 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7234 1.2498 5 7 3.5046 -0.8281 1.1703 6 6 4.2807 -0.3840 2.1788 7 8 3.7805 0.2122 3.1142 8 6 5.7287 -0.6196 2.1487 9 6 6.6585 0.2027 2.6764 10 6 7.9611 -0.2537 2.5171 11 6 9.1350 0.4814 3.0194 12 7 10.3735 -0.0142 2.8269 13 8 8.9866 1.5354 3.6078 14 6 8.0578 -1.4416 1.8484 15 16 6.5097 -2.0110 1.4133 16 6 4.1061 -1.4204 -0.0323 17 6 3.5715 -0.6943 -1.2653 18 6 2.0414 -0.7230 -1.2481 19 1 1.6978 -1.7574 -1.2350 20 7 1.5272 -0.0532 -2.4453 21 6 1.3978 -0.7497 -3.6172 22 1 1.6751 -1.7927 -3.6589 23 6 0.9101 -0.1153 -4.7513 24 7 0.5716 1.1556 -4.7003 25 14 0.7328 -1.0656 -6.3498 26 1 1.1777 -2.4674 -6.1442 27 1 -0.6893 -1.0546 -6.7771 28 1 1.5698 -0.4299 -7.3989 29 1 -0.3633 0.5129 0.8905 30 1 -0.3633 0.5149 -0.8894 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6056 -1.7215 1.2983 33 1 1.7632 -0.1575 2.1390 34 1 6.4133 1.1271 3.1781 35 1 10.4919 -0.8550 2.3580 36 1 11.1463 0.4696 3.1579 37 1 8.9850 -1.9487 1.6258 38 1 5.1901 -1.3144 0.0112 39 1 3.8423 -2.4765 -0.0905 40 1 3.9345 -1.1889 -2.1662 41 1 3.9161 0.3398 -1.2534 42 1 1.2785 0.8835 -2.4078 43 1 0.2305 1.5989 -5.4928 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036311710.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:12 Heat of formation + Delta-G solvation = -26.922204 kcal Electronic energy + Delta-G solvation = -26682.029422 eV Core-core repulsion = 22854.016551 eV Total energy + Delta-G solvation = -3828.012870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.43443 -39.93385 -37.92340 -36.90497 -34.72157 -34.12051 -32.97726 -31.57968 -30.31035 -29.36867 -26.75862 -25.80530 -25.07279 -23.31876 -22.56554 -21.70490 -20.30670 -19.56917 -19.38369 -18.36455 -17.44091 -17.20064 -17.10336 -16.29115 -15.63632 -15.37544 -15.04912 -14.96146 -14.65788 -14.19231 -13.90644 -13.67875 -13.57240 -13.39633 -13.17558 -13.03039 -12.85591 -12.47307 -12.22505 -11.92003 -11.69272 -11.46417 -11.21025 -10.99299 -10.85469 -10.71903 -10.46674 -10.37243 -10.20163 -10.10032 -10.04506 -9.79103 -9.67141 -9.32318 -9.00865 -8.75603 -8.58479 -7.00695 -5.81387 -3.10449 0.06949 0.98770 1.38104 1.47388 2.74103 2.93611 3.16004 3.20805 3.39040 3.44392 3.47167 4.28222 4.49398 4.53885 4.65210 4.84942 4.90261 5.18465 5.20491 5.25796 5.40970 5.46160 5.48167 5.62835 5.64271 5.76205 5.86551 5.89377 6.03564 6.08742 6.24473 6.31197 6.37956 6.39047 6.46959 6.57045 6.74817 6.88185 6.91329 6.99749 7.33653 7.64833 7.88548 8.04128 8.36554 9.48163 10.05303 10.40083 11.41025 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.015999 B = 0.002774 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.722946 B =10092.514228 C =10934.053364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 H 0.071 0.929 4 C 0.122 3.878 5 N -0.601 5.601 6 C 0.588 3.412 7 O -0.529 6.529 8 C -0.264 4.264 9 C -0.019 4.019 10 C -0.163 4.163 11 C 0.583 3.417 12 N -0.851 5.851 13 O -0.535 6.535 14 C -0.224 4.224 15 S 0.277 5.723 16 C 0.096 3.904 17 C -0.150 4.150 18 C 0.184 3.816 19 H 0.049 0.951 20 N -0.720 5.720 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.161 0.839 35 H 0.400 0.600 36 H 0.406 0.594 37 H 0.174 0.826 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.384 0.616 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.447 -9.542 13.781 23.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.131 4.131 3 H 0.089 0.911 4 C 0.000 4.000 5 N -0.333 5.333 6 C 0.375 3.625 7 O -0.407 6.407 8 C -0.384 4.384 9 C -0.049 4.049 10 C -0.181 4.181 11 C 0.367 3.633 12 N -0.415 5.415 13 O -0.412 6.412 14 C -0.363 4.363 15 S 0.546 5.454 16 C -0.029 4.029 17 C -0.191 4.191 18 C 0.074 3.926 19 H 0.067 0.933 20 N -0.360 5.360 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.579 5.579 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.179 0.821 35 H 0.228 0.772 36 H 0.237 0.763 37 H 0.192 0.808 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.218 0.782 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.324 -9.998 13.705 22.861 hybrid contribution 1.079 0.818 -0.514 1.448 sum 16.403 -9.180 13.191 22.964 Atomic orbital electron populations 1.21655 0.93936 1.01803 1.01962 1.21756 0.96722 1.00195 0.94436 0.91069 1.21787 0.77390 1.01086 0.99770 1.48021 1.07453 1.60451 1.17378 1.16972 0.84024 0.78914 0.82588 1.90827 1.73812 1.41063 1.35010 1.24211 0.98241 1.03015 1.12892 1.20261 0.89346 0.99993 0.95347 1.18979 0.94624 0.97139 1.07326 1.17646 0.82955 0.84286 0.78406 1.43659 1.07972 1.27814 1.62028 1.90864 1.86070 1.22649 1.41639 1.26350 1.05890 1.00617 1.03450 1.83410 0.92951 1.20830 1.48214 1.22148 0.97369 0.98003 0.85337 1.22615 1.00576 1.00562 0.95353 1.20189 0.90127 0.95778 0.86517 0.93288 1.42416 1.76368 1.11498 1.05723 1.19244 1.35941 0.94126 0.87650 0.91159 1.24738 1.02029 0.96019 0.98077 1.69671 1.49857 1.09533 1.28826 0.86159 0.77339 0.78840 0.84065 1.20583 1.21906 1.21945 0.93735 0.90684 0.93011 0.91167 0.89051 0.82116 0.77171 0.76281 0.80841 0.90513 0.90805 0.90215 0.91993 0.78158 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.02 37.16 0.34 -1.81 16 2 C -0.11 -1.78 2.46 -90.50 -0.22 -2.00 16 3 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 4 C 0.12 1.71 5.73 -3.71 -0.02 1.69 16 5 N -0.60 -8.31 2.98 -174.55 -0.52 -8.83 16 6 C 0.59 8.78 7.57 -12.83 -0.10 8.68 16 7 O -0.53 -9.56 16.39 5.21 0.09 -9.47 16 8 C -0.26 -3.22 5.64 -37.34 -0.21 -3.43 16 9 C -0.02 -0.23 9.60 -40.52 -0.39 -0.62 16 10 C -0.16 -1.63 5.82 -106.51 -0.62 -2.25 16 11 C 0.58 6.10 8.06 -12.56 -0.10 6.00 16 12 N -0.85 -4.73 8.84 30.41 0.27 -4.47 16 13 O -0.54 -7.97 17.53 5.26 0.09 -7.88 16 14 C -0.22 -1.53 10.41 30.16 0.31 -1.22 16 15 S 0.28 2.21 19.31 -107.50 -2.08 0.13 16 16 C 0.10 1.18 5.46 -3.93 -0.02 1.16 16 17 C -0.15 -2.39 5.64 -26.83 -0.15 -2.54 16 18 C 0.18 3.33 2.20 -67.89 -0.15 3.18 16 19 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 20 N -0.72 -16.77 4.41 -53.39 -0.24 -17.01 16 21 C -0.24 -6.20 9.93 -15.06 -0.15 -6.35 16 22 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -27.25 13.06 55.49 0.72 -26.53 16 25 Si 0.90 21.59 29.55 -169.99 -5.02 16.57 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.40 7.37 -51.93 -0.38 1.02 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 34 H 0.16 2.22 7.98 -52.49 -0.42 1.80 16 35 H 0.40 0.95 7.29 -40.82 -0.30 0.65 16 36 H 0.41 1.78 8.93 -40.82 -0.36 1.41 16 37 H 0.17 0.49 6.99 -52.49 -0.37 0.12 16 38 H 0.08 0.83 4.04 -26.77 -0.11 0.72 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.06 1.08 8.14 -51.92 -0.42 0.65 16 42 H 0.38 9.77 7.50 -40.82 -0.31 9.46 16 43 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 364.73 15.07 5.50 5.50 Total: -1.00 -34.33 364.73 -8.30 -42.63 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -5.53 Total: 9.30 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -1.58 Total: 0.06 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: 0.24 Total: -56.83 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: 0.18 Total: -17.35 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.08 Total: 0.13 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.33 -8.30 -42.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036311710.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.703 kcal (2) G-P(sol) polarization free energy of solvation -34.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds