Wall clock time and date at job start Tue Mar 31 2020 20:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.49919 * 2 1 4 4 C 1.53190 * 109.49533 * 120.06268 * 2 1 3 5 5 N 1.46924 * 108.77788 * 174.61766 * 4 2 1 6 6 C 1.34780 * 120.63246 * 126.36231 * 5 4 2 7 7 O 1.21680 * 119.99641 * 353.68571 * 6 5 4 8 8 C 1.46738 * 119.99836 * 173.67877 * 6 5 4 9 9 C 1.34877 * 125.05409 * 148.34121 * 8 6 5 10 10 C 1.38937 * 113.65198 * 179.80011 * 9 8 6 11 11 C 1.47335 * 122.95844 * 180.21328 * 10 9 8 12 12 N 1.34775 * 119.99882 * 180.26661 * 11 10 9 13 13 O 1.21617 * 120.00490 * 0.27199 * 11 10 9 14 14 C 1.36658 * 114.07772 * 0.48260 * 10 9 8 15 15 S 1.70598 * 110.53162 * 359.73699 * 14 10 9 16 16 C 1.46927 * 118.73576 * 306.64788 * 5 4 2 17 17 C 1.52757 * 109.01363 * 53.30536 * 16 5 4 18 18 C 1.53036 * 109.52254 * 239.91638 * 2 1 3 19 19 H 1.09001 * 109.46376 * 298.68882 * 18 2 1 20 20 N 1.46501 * 109.46143 * 58.65167 * 18 2 1 21 21 C 1.36940 * 119.99906 * 204.99914 * 20 18 2 22 22 H 1.07999 * 119.99498 * 359.97438 * 21 20 18 23 23 C 1.38802 * 120.00031 * 179.97438 * 21 20 18 24 24 N 1.31622 * 120.00005 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00168 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47130 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47452 * 120.00205 * 25 23 21 28 28 H 1.48507 * 109.46804 * 239.99975 * 25 23 21 29 29 H 1.09000 * 109.47142 * 299.94212 * 1 2 3 30 30 H 1.09001 * 109.46909 * 59.93191 * 1 2 3 31 31 H 1.08999 * 109.47334 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.58944 * 54.83186 * 4 2 1 33 33 H 1.09005 * 109.58521 * 294.40391 * 4 2 1 34 34 H 1.08001 * 123.16872 * 359.97438 * 9 8 6 35 35 H 0.96998 * 119.99937 * 359.97438 * 12 11 10 36 36 H 0.96998 * 119.99959 * 180.02562 * 12 11 10 37 37 H 1.08001 * 124.73567 * 179.69894 * 14 10 9 38 38 H 1.09007 * 109.58687 * 173.14142 * 16 5 4 39 39 H 1.09002 * 109.58749 * 293.56181 * 16 5 4 40 40 H 1.08995 * 109.57127 * 185.55200 * 17 16 5 41 41 H 1.09011 * 109.35845 * 65.49453 * 17 16 5 42 42 H 0.96996 * 120.00010 * 24.99554 * 20 18 2 43 43 H 0.97005 * 120.00209 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7234 1.2498 5 7 3.5046 -0.8281 1.1703 6 6 4.2807 -0.3840 2.1788 7 8 3.7805 0.2122 3.1142 8 6 5.7287 -0.6196 2.1487 9 6 6.6585 0.2027 2.6764 10 6 7.9611 -0.2537 2.5171 11 6 9.1350 0.4814 3.0194 12 7 10.3735 -0.0142 2.8269 13 8 8.9866 1.5354 3.6078 14 6 8.0578 -1.4416 1.8484 15 16 6.5097 -2.0110 1.4133 16 6 4.1061 -1.4204 -0.0323 17 6 3.5715 -0.6943 -1.2653 18 6 2.0414 -0.7230 -1.2481 19 1 1.6978 -1.7574 -1.2350 20 7 1.5272 -0.0532 -2.4453 21 6 1.3978 -0.7497 -3.6172 22 1 1.6751 -1.7927 -3.6589 23 6 0.9101 -0.1153 -4.7513 24 7 0.5716 1.1556 -4.7003 25 14 0.7328 -1.0656 -6.3498 26 1 1.1777 -2.4674 -6.1442 27 1 -0.6893 -1.0546 -6.7771 28 1 1.5698 -0.4299 -7.3989 29 1 -0.3633 0.5129 0.8905 30 1 -0.3633 0.5149 -0.8894 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6056 -1.7215 1.2983 33 1 1.7632 -0.1575 2.1390 34 1 6.4133 1.1271 3.1781 35 1 10.4919 -0.8550 2.3580 36 1 11.1463 0.4696 3.1579 37 1 8.9850 -1.9487 1.6258 38 1 5.1901 -1.3144 0.0112 39 1 3.8423 -2.4765 -0.0905 40 1 3.9345 -1.1889 -2.1662 41 1 3.9161 0.3398 -1.2534 42 1 1.2785 0.8835 -2.4078 43 1 0.2305 1.5989 -5.4928 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036311710.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:12 Heat of formation + Delta-G solvation = -53.334553 kcal Electronic energy + Delta-G solvation = -26683.174747 eV Core-core repulsion = 22854.016551 eV Total energy + Delta-G solvation = -3829.158196 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.49574 -40.82504 -39.17242 -37.83748 -36.23836 -34.84281 -34.50785 -33.11246 -31.30623 -30.89549 -27.88934 -26.93609 -26.33184 -24.76405 -23.65658 -23.09194 -21.37535 -20.72295 -20.20086 -19.36434 -18.98690 -18.19145 -17.97418 -17.37295 -16.79092 -16.49905 -16.40061 -15.91769 -15.70256 -15.59385 -15.41863 -15.00549 -14.71620 -14.58803 -14.23032 -14.08446 -13.84202 -13.74603 -13.49738 -13.19669 -12.92174 -12.87178 -12.79481 -12.49322 -12.30706 -12.09241 -12.05394 -11.84540 -11.66629 -11.28784 -11.16824 -11.14458 -10.86671 -10.75407 -10.15530 -9.73674 -9.51606 -8.93821 -7.88633 -5.16511 -0.67236 0.22809 0.57814 0.68172 1.50882 1.51311 1.60868 1.65656 1.95416 2.31168 2.56499 2.60336 3.35494 3.45127 3.78572 3.79178 3.90558 3.95968 4.04390 4.05794 4.11590 4.26090 4.35750 4.46283 4.59554 4.62499 4.75345 4.77054 4.81214 4.91550 4.94008 4.97402 5.02703 5.19590 5.29743 5.39536 5.49597 5.58351 5.61946 5.85021 6.22178 6.32502 6.40423 6.91953 7.27917 7.38956 8.14815 8.37814 9.35306 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.015999 B = 0.002774 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.722946 B =10092.514228 C =10934.053364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.102 4.102 3 H 0.047 0.953 4 C 0.127 3.873 5 N -0.601 5.601 6 C 0.585 3.415 7 O -0.573 6.573 8 C -0.304 4.304 9 C -0.030 4.030 10 C -0.190 4.190 11 C 0.580 3.420 12 N -0.824 5.824 13 O -0.594 6.594 14 C -0.187 4.187 15 S 0.350 5.650 16 C 0.102 3.898 17 C -0.142 4.142 18 C 0.180 3.820 19 H 0.058 0.942 20 N -0.732 5.732 21 C -0.225 4.225 22 H 0.083 0.917 23 C -0.080 4.080 24 N -0.973 5.973 25 Si 0.967 3.033 26 H -0.260 1.260 27 H -0.300 1.300 28 H -0.300 1.300 29 H 0.062 0.938 30 H 0.040 0.960 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.128 0.872 35 H 0.419 0.581 36 H 0.414 0.586 37 H 0.226 0.774 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.039 0.961 42 H 0.369 0.631 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.927 -13.672 13.546 26.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.123 4.123 3 H 0.065 0.935 4 C 0.005 3.995 5 N -0.332 5.332 6 C 0.374 3.626 7 O -0.455 6.455 8 C -0.423 4.423 9 C -0.062 4.062 10 C -0.206 4.206 11 C 0.364 3.636 12 N -0.388 5.388 13 O -0.476 6.476 14 C -0.326 4.326 15 S 0.619 5.381 16 C -0.022 4.022 17 C -0.183 4.183 18 C 0.071 3.929 19 H 0.076 0.924 20 N -0.371 5.371 21 C -0.357 4.357 22 H 0.101 0.899 23 C -0.272 4.272 24 N -0.625 5.625 25 Si 0.798 3.202 26 H -0.184 1.184 27 H -0.228 1.228 28 H -0.227 1.227 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.146 0.854 35 H 0.251 0.749 36 H 0.247 0.753 37 H 0.242 0.758 38 H 0.114 0.886 39 H 0.124 0.876 40 H 0.096 0.904 41 H 0.058 0.942 42 H 0.201 0.799 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 17.875 -14.225 13.473 26.522 hybrid contribution 0.394 2.023 -0.391 2.097 sum 18.269 -12.203 13.082 25.569 Atomic orbital electron populations 1.21568 0.93720 1.02290 1.01135 1.21629 0.96874 0.98976 0.94773 0.93458 1.21709 0.77902 1.01979 0.97911 1.48080 1.07300 1.60214 1.17602 1.17372 0.85245 0.77937 0.82057 1.90791 1.75014 1.42953 1.36722 1.24036 0.96817 1.05937 1.15548 1.20199 0.91136 0.99346 0.95500 1.18823 0.93339 0.98782 1.09693 1.17810 0.84283 0.83640 0.77837 1.43430 1.06585 1.28174 1.60613 1.90839 1.86962 1.25263 1.44572 1.26895 1.07704 0.98514 0.99535 1.83050 0.91970 1.17067 1.45986 1.22229 0.98395 0.98834 0.82720 1.22406 0.98617 0.99904 0.97325 1.20437 0.91452 0.95708 0.85267 0.92417 1.42629 1.76756 1.10905 1.06800 1.19662 1.33269 0.94540 0.88223 0.89908 1.25512 1.03364 0.96894 1.01408 1.69840 1.52203 1.11307 1.29130 0.85146 0.76423 0.78538 0.80121 1.18394 1.22804 1.22730 0.91941 0.94115 0.91772 0.88541 0.89839 0.85399 0.74870 0.75320 0.75758 0.88596 0.87617 0.90352 0.94208 0.79948 0.94411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 9.02 71.98 0.65 -3.43 16 2 C -0.10 -3.29 2.46 -10.72 -0.03 -3.31 16 3 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 4 C 0.13 3.43 5.73 86.36 0.49 3.92 16 5 N -0.60 -15.82 2.98 -824.36 -2.46 -18.27 16 6 C 0.59 17.42 7.57 86.46 0.65 18.07 16 7 O -0.57 -21.59 16.39 -4.29 -0.07 -21.66 16 8 C -0.30 -7.13 5.64 23.72 0.13 -6.99 16 9 C -0.03 -0.76 9.60 21.66 0.21 -0.55 16 10 C -0.19 -3.47 5.82 -21.09 -0.12 -3.59 16 11 C 0.58 11.54 8.06 86.64 0.70 12.24 16 12 N -0.82 -6.78 8.84 -175.95 -1.56 -8.33 16 13 O -0.59 -18.40 17.53 -4.08 -0.07 -18.48 16 14 C -0.19 -1.67 10.41 67.45 0.70 -0.97 16 15 S 0.35 4.07 19.31 -56.49 -1.09 2.98 16 16 C 0.10 2.21 5.46 86.22 0.47 2.68 16 17 C -0.14 -4.31 5.64 30.53 0.17 -4.14 16 18 C 0.18 6.35 2.20 45.02 0.10 6.45 16 19 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 20 N -0.73 -34.48 4.41 -322.81 -1.42 -35.91 16 21 C -0.23 -11.61 9.93 84.03 0.83 -10.77 16 22 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 23 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 24 N -0.97 -58.70 13.06 21.65 0.28 -58.41 16 25 Si 0.97 44.50 29.55 68.60 2.03 46.53 16 26 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 27 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 28 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.04 1.56 7.37 -2.39 -0.02 1.55 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 32 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.08 2.44 7.00 -2.38 -0.02 2.42 16 34 H 0.13 3.97 7.98 -2.91 -0.02 3.95 16 35 H 0.42 0.01 7.29 -92.71 -0.68 -0.67 16 36 H 0.41 2.61 8.93 -92.71 -0.83 1.79 16 37 H 0.23 -0.40 6.99 -2.91 -0.02 -0.42 16 38 H 0.10 1.72 4.04 -18.38 -0.07 1.65 16 39 H 0.11 1.73 8.14 -2.39 -0.02 1.72 16 40 H 0.08 2.42 8.14 -2.39 -0.02 2.41 16 41 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.37 19.51 7.50 -92.71 -0.70 18.82 16 43 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 Total: -1.00 -81.02 364.73 -0.10 -81.12 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: -1.18 Total: 24.78 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: 5.43 Total: 5.66 kcal Atomic # 7 Polarization: -115.77 SS G_CDS: -5.15 Total: -120.93 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -0.14 Total: -40.13 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: 4.07 SS G_CDS: -1.09 Total: 2.98 kcal Total: -81.02 -0.10 -81.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036311710.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.783 kcal (2) G-P(sol) polarization free energy of solvation -81.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds