Wall clock time and date at job start Tue Mar 31 2020 20:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.58848 * 2 1 4 4 C 1.53192 * 109.58271 * 239.56337 * 2 1 3 5 5 C 1.53041 * 109.31509 * 185.56440 * 4 2 1 6 6 H 1.09002 * 109.45936 * 301.37539 * 5 4 2 7 7 N 1.46494 * 109.46378 * 181.39864 * 5 4 2 8 8 C 1.36936 * 120.00025 * 154.97483 * 7 5 4 9 9 H 1.08002 * 120.00152 * 359.97438 * 8 7 5 10 10 C 1.38813 * 120.00119 * 180.02562 * 8 7 5 11 11 N 1.31614 * 120.00241 * 179.97438 * 10 8 7 12 12 Si 1.86806 * 119.99757 * 359.97438 * 10 8 7 13 13 H 1.48506 * 109.46887 * 90.00551 * 12 10 8 14 14 H 1.48495 * 109.47487 * 330.00443 * 12 10 8 15 15 H 1.48503 * 109.47345 * 209.99879 * 12 10 8 16 16 C 1.53045 * 109.52453 * 61.38100 * 5 4 2 17 17 C 1.53189 * 109.31554 * 298.63110 * 16 5 4 18 18 N 1.46924 * 108.77409 * 54.63483 * 17 16 5 19 19 C 1.34780 * 120.63162 * 126.36711 * 18 17 16 20 20 O 1.21624 * 120.00012 * 175.45884 * 19 18 17 21 21 C 1.47166 * 119.99787 * 355.46711 * 19 18 17 22 22 C 1.36616 * 125.15985 * 222.96518 * 21 19 18 23 23 C 1.36795 * 114.74284 * 179.97438 * 22 21 19 24 24 C 1.36611 * 114.74874 * 359.97438 * 23 22 21 25 25 C 1.47176 * 125.16356 * 180.02562 * 24 23 22 26 26 N 1.34770 * 119.99805 * 179.97438 * 25 24 23 27 27 O 1.21621 * 119.99760 * 359.97438 * 25 24 23 28 28 S 1.75839 * 125.16219 * 42.65798 * 21 19 18 29 29 H 1.09005 * 109.47066 * 305.94994 * 1 2 3 30 30 H 1.09000 * 109.47203 * 65.94634 * 1 2 3 31 31 H 1.08998 * 109.47227 * 185.95047 * 1 2 3 32 32 H 1.09000 * 109.49117 * 65.61935 * 4 2 1 33 33 H 1.09005 * 109.51121 * 305.52096 * 4 2 1 34 34 H 0.97003 * 119.99978 * 334.96684 * 7 5 4 35 35 H 0.97006 * 120.00123 * 179.97438 * 11 10 8 36 36 H 1.08999 * 109.49772 * 58.58897 * 16 5 4 37 37 H 1.09001 * 109.49585 * 178.67780 * 16 5 4 38 38 H 1.08999 * 109.58750 * 174.41918 * 17 16 5 39 39 H 1.08993 * 109.58563 * 294.70545 * 17 16 5 40 40 H 1.07997 * 122.62969 * 359.97438 * 22 21 19 41 41 H 1.08000 * 122.62389 * 179.97438 * 23 22 21 42 42 H 0.96997 * 120.00844 * 0.02562 * 26 25 24 43 43 H 0.97004 * 119.99836 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7312 -1.2444 5 6 3.5674 -0.8494 -1.1693 6 1 4.0059 0.1461 -1.0995 7 7 4.0650 -1.5186 -2.3737 8 6 5.3493 -1.3015 -2.7965 9 1 5.9951 -0.6366 -2.2422 10 6 5.8207 -1.9352 -3.9380 11 7 7.0548 -1.7261 -4.3447 12 14 4.7033 -3.0847 -4.8971 13 1 3.9681 -2.3121 -5.9305 14 1 3.7326 -3.7194 -3.9697 15 1 5.5209 -4.1362 -5.5536 16 6 3.9568 -1.6657 0.0654 17 6 3.4650 -0.9454 1.3248 18 7 2.0226 -0.6981 1.1953 19 6 1.1673 -1.1044 2.1545 20 8 -0.0130 -0.8218 2.0762 21 6 1.6618 -1.8898 3.2966 22 6 1.0406 -2.9854 3.8259 23 6 1.6890 -3.5541 4.8876 24 6 2.8527 -2.9345 5.2457 25 6 3.7306 -3.3527 6.3504 26 7 4.8584 -2.6633 6.6129 27 8 3.4381 -4.3206 7.0264 28 16 3.1458 -1.5652 4.1821 29 1 -0.3633 0.6033 0.8320 30 1 -0.3633 0.4189 -0.9384 31 1 -0.3633 -1.0221 0.1065 32 1 1.7657 -0.1698 -2.1365 33 1 1.6030 -1.7273 -1.2890 34 1 3.4848 -2.1156 -2.8716 35 1 7.3843 -2.1693 -5.1422 36 1 3.4983 -2.6529 0.0083 37 1 5.0411 -1.7695 0.1056 38 1 3.6518 -1.5692 2.1989 39 1 3.9921 0.0025 1.4329 40 1 0.1104 -3.3721 3.4366 41 1 1.3107 -4.4249 5.4025 42 1 5.0915 -1.8912 6.0740 43 1 5.4372 -2.9392 7.3408 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044779599.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:23 Heat of formation + Delta-G solvation = -5.554747 kcal Electronic energy + Delta-G solvation = -26889.202334 eV Core-core repulsion = 23062.116026 eV Total energy + Delta-G solvation = -3827.086308 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.68020 -39.88328 -37.96789 -37.12660 -34.79159 -34.17993 -33.11610 -32.05787 -30.29666 -29.72231 -27.35130 -26.06555 -24.44684 -22.97282 -22.58195 -22.04510 -20.63973 -20.04185 -19.44704 -18.20398 -17.61294 -17.42395 -17.00227 -16.19713 -15.86235 -15.64350 -15.17258 -15.05005 -14.88812 -14.29181 -14.10010 -13.81791 -13.74314 -13.32264 -13.22080 -12.99667 -12.69638 -12.61754 -12.40556 -12.20364 -11.98859 -11.72878 -11.39619 -11.08133 -11.05245 -10.96545 -10.70704 -10.59568 -10.37435 -10.21907 -10.02811 -9.67300 -9.43860 -9.17462 -9.05687 -8.80293 -8.67144 -7.36765 -5.84968 -3.21333 -0.20137 0.84894 1.25197 1.81337 2.57384 2.76395 2.94320 2.98752 3.32297 3.35484 3.40828 4.18316 4.44459 4.52253 4.79742 4.82369 4.86678 4.99341 5.02237 5.12683 5.27893 5.37068 5.47558 5.52696 5.60085 5.62681 5.70118 5.80296 5.87537 5.91387 5.95590 6.14120 6.19757 6.26301 6.26886 6.31700 6.54231 6.67710 6.77147 6.82804 7.22192 7.72131 7.89714 7.92337 8.33904 9.11752 9.84612 10.03899 11.33049 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012857 B = 0.003222 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.253441 B = 8689.147687 C =10012.677010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.149 3.851 3 H 0.078 0.922 4 C -0.140 4.140 5 C 0.184 3.816 6 H 0.058 0.942 7 N -0.747 5.747 8 C -0.247 4.247 9 H 0.091 0.909 10 C 0.007 3.993 11 N -0.932 5.932 12 Si 0.883 3.117 13 H -0.284 1.284 14 H -0.277 1.277 15 H -0.291 1.291 16 C -0.149 4.149 17 C 0.093 3.907 18 N -0.593 5.593 19 C 0.584 3.416 20 O -0.518 6.518 21 C -0.213 4.213 22 C -0.084 4.084 23 C -0.058 4.058 24 C -0.261 4.261 25 C 0.598 3.402 26 N -0.849 5.849 27 O -0.529 6.529 28 S 0.207 5.793 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.361 0.639 35 H 0.260 0.740 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.157 0.843 41 H 0.158 0.842 42 H 0.400 0.600 43 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.039 2.228 19.770 21.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.047 3.953 3 H 0.096 0.904 4 C -0.179 4.179 5 C 0.074 3.926 6 H 0.076 0.924 7 N -0.389 5.389 8 C -0.377 4.377 9 H 0.109 0.891 10 C -0.189 4.189 11 N -0.579 5.579 12 Si 0.714 3.286 13 H -0.210 1.210 14 H -0.204 1.204 15 H -0.217 1.217 16 C -0.190 4.190 17 C -0.031 4.031 18 N -0.326 5.326 19 C 0.370 3.630 20 O -0.396 6.396 21 C -0.335 4.335 22 C -0.117 4.117 23 C -0.092 4.092 24 C -0.382 4.382 25 C 0.382 3.618 26 N -0.413 5.413 27 O -0.406 6.406 28 S 0.476 5.524 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.194 0.806 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.175 0.825 41 H 0.175 0.825 42 H 0.229 0.771 43 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -8.562 2.950 19.886 21.851 hybrid contribution -1.158 -1.785 -0.681 2.234 sum -9.720 1.166 19.205 21.556 Atomic orbital electron populations 1.22221 0.92630 1.03651 1.01096 1.21364 0.95599 0.95267 0.83069 0.90394 1.22364 0.97585 1.01081 0.96861 1.20139 0.90746 0.95414 0.86332 0.92373 1.42783 1.13251 1.54726 1.28108 1.19048 0.87687 1.23451 1.07464 0.89139 1.24669 0.96082 0.99995 0.98176 1.69694 1.15101 1.47014 1.26131 0.86574 0.80360 0.81298 0.80400 1.21031 1.20362 1.21723 1.22642 1.02380 0.99838 0.94162 1.22304 0.79377 1.01284 1.00180 1.48148 1.07681 1.56721 1.20062 1.17158 0.85746 0.79044 0.81039 1.90884 1.16079 1.55978 1.76632 1.25057 1.00551 1.03800 1.04054 1.20479 1.01243 0.94331 0.95603 1.20546 0.92549 1.00309 0.95749 1.24945 1.03012 1.05344 1.04933 1.17043 0.80394 0.82247 0.82144 1.43679 1.25315 1.33898 1.38382 1.90868 1.73089 1.26899 1.49762 1.84118 1.19143 1.27779 1.21385 0.90630 0.93319 0.91652 0.90176 0.91733 0.80587 0.92985 0.92090 0.89820 0.90261 0.90455 0.82538 0.82454 0.77091 0.75763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 7.61 37.15 0.28 -1.45 16 2 C 0.15 1.89 3.49 -67.60 -0.24 1.65 16 3 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.14 -2.02 4.84 -26.61 -0.13 -2.15 16 5 C 0.18 3.14 2.73 -67.89 -0.19 2.96 16 6 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 7 N -0.75 -16.45 4.92 -53.39 -0.26 -16.72 16 8 C -0.25 -6.55 10.41 -15.06 -0.16 -6.71 16 9 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 10 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 11 N -0.93 -28.32 13.97 55.49 0.78 -27.54 16 12 Si 0.88 21.47 27.74 -169.99 -4.71 16.75 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 16 C -0.15 -2.25 5.66 -26.61 -0.15 -2.40 16 17 C 0.09 1.08 5.89 -3.71 -0.02 1.06 16 18 N -0.59 -7.39 2.97 -166.59 -0.50 -7.89 16 19 C 0.58 7.58 7.38 -12.63 -0.09 7.49 16 20 O -0.52 -7.75 12.60 5.26 0.07 -7.69 16 21 C -0.21 -2.34 5.61 -36.54 -0.20 -2.55 16 22 C -0.08 -0.85 10.09 -40.69 -0.41 -1.26 16 23 C -0.06 -0.56 9.88 -40.69 -0.40 -0.97 16 24 C -0.26 -2.52 6.46 -36.54 -0.24 -2.76 16 25 C 0.60 6.02 8.08 -12.63 -0.10 5.91 16 26 N -0.85 -5.24 8.87 30.37 0.27 -4.97 16 27 O -0.53 -7.21 17.65 5.26 0.09 -7.12 16 28 S 0.21 1.75 18.91 -107.50 -2.03 -0.29 16 29 H 0.07 1.00 6.60 -51.93 -0.34 0.66 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.91 6.89 -51.93 -0.36 0.55 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.36 7.98 5.66 -40.82 -0.23 7.75 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.08 0.82 3.76 -26.73 -0.10 0.72 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 41 H 0.16 1.37 8.04 -52.49 -0.42 0.95 16 42 H 0.40 1.65 7.93 -40.82 -0.32 1.33 16 43 H 0.41 1.88 8.93 -40.82 -0.36 1.52 16 LS Contribution 359.30 15.07 5.41 5.41 Total: -1.00 -33.67 359.30 -8.56 -42.24 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.53 Total: 8.88 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -2.14 Total: -1.08 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 0.29 Total: -57.11 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: 0.16 Total: -14.81 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.71 Total: 16.75 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.03 Total: -0.29 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.67 -8.56 -42.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044779599.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.681 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds