Wall clock time and date at job start Tue Mar 31 2020 20:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.58848 * 2 1 4 4 C 1.53192 * 109.58271 * 239.56337 * 2 1 3 5 5 C 1.53041 * 109.31509 * 185.56440 * 4 2 1 6 6 H 1.09002 * 109.45936 * 301.37539 * 5 4 2 7 7 N 1.46494 * 109.46378 * 181.39864 * 5 4 2 8 8 C 1.36936 * 120.00025 * 154.97483 * 7 5 4 9 9 H 1.08002 * 120.00152 * 359.97438 * 8 7 5 10 10 C 1.38813 * 120.00119 * 180.02562 * 8 7 5 11 11 N 1.31614 * 120.00241 * 179.97438 * 10 8 7 12 12 Si 1.86806 * 119.99757 * 359.97438 * 10 8 7 13 13 H 1.48506 * 109.46887 * 90.00551 * 12 10 8 14 14 H 1.48495 * 109.47487 * 330.00443 * 12 10 8 15 15 H 1.48503 * 109.47345 * 209.99879 * 12 10 8 16 16 C 1.53045 * 109.52453 * 61.38100 * 5 4 2 17 17 C 1.53189 * 109.31554 * 298.63110 * 16 5 4 18 18 N 1.46924 * 108.77409 * 54.63483 * 17 16 5 19 19 C 1.34780 * 120.63162 * 126.36711 * 18 17 16 20 20 O 1.21624 * 120.00012 * 175.45884 * 19 18 17 21 21 C 1.47166 * 119.99787 * 355.46711 * 19 18 17 22 22 C 1.36616 * 125.15985 * 222.96518 * 21 19 18 23 23 C 1.36795 * 114.74284 * 179.97438 * 22 21 19 24 24 C 1.36611 * 114.74874 * 359.97438 * 23 22 21 25 25 C 1.47176 * 125.16356 * 180.02562 * 24 23 22 26 26 N 1.34770 * 119.99805 * 179.97438 * 25 24 23 27 27 O 1.21621 * 119.99760 * 359.97438 * 25 24 23 28 28 S 1.75839 * 125.16219 * 42.65798 * 21 19 18 29 29 H 1.09005 * 109.47066 * 305.94994 * 1 2 3 30 30 H 1.09000 * 109.47203 * 65.94634 * 1 2 3 31 31 H 1.08998 * 109.47227 * 185.95047 * 1 2 3 32 32 H 1.09000 * 109.49117 * 65.61935 * 4 2 1 33 33 H 1.09005 * 109.51121 * 305.52096 * 4 2 1 34 34 H 0.97003 * 119.99978 * 334.96684 * 7 5 4 35 35 H 0.97006 * 120.00123 * 179.97438 * 11 10 8 36 36 H 1.08999 * 109.49772 * 58.58897 * 16 5 4 37 37 H 1.09001 * 109.49585 * 178.67780 * 16 5 4 38 38 H 1.08999 * 109.58750 * 174.41918 * 17 16 5 39 39 H 1.08993 * 109.58563 * 294.70545 * 17 16 5 40 40 H 1.07997 * 122.62969 * 359.97438 * 22 21 19 41 41 H 1.08000 * 122.62389 * 179.97438 * 23 22 21 42 42 H 0.96997 * 120.00844 * 0.02562 * 26 25 24 43 43 H 0.97004 * 119.99836 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7312 -1.2444 5 6 3.5674 -0.8494 -1.1693 6 1 4.0059 0.1461 -1.0995 7 7 4.0650 -1.5186 -2.3737 8 6 5.3493 -1.3015 -2.7965 9 1 5.9951 -0.6366 -2.2422 10 6 5.8207 -1.9352 -3.9380 11 7 7.0548 -1.7261 -4.3447 12 14 4.7033 -3.0847 -4.8971 13 1 3.9681 -2.3121 -5.9305 14 1 3.7326 -3.7194 -3.9697 15 1 5.5209 -4.1362 -5.5536 16 6 3.9568 -1.6657 0.0654 17 6 3.4650 -0.9454 1.3248 18 7 2.0226 -0.6981 1.1953 19 6 1.1673 -1.1044 2.1545 20 8 -0.0130 -0.8218 2.0762 21 6 1.6618 -1.8898 3.2966 22 6 1.0406 -2.9854 3.8259 23 6 1.6890 -3.5541 4.8876 24 6 2.8527 -2.9345 5.2457 25 6 3.7306 -3.3527 6.3504 26 7 4.8584 -2.6633 6.6129 27 8 3.4381 -4.3206 7.0264 28 16 3.1458 -1.5652 4.1821 29 1 -0.3633 0.6033 0.8320 30 1 -0.3633 0.4189 -0.9384 31 1 -0.3633 -1.0221 0.1065 32 1 1.7657 -0.1698 -2.1365 33 1 1.6030 -1.7273 -1.2890 34 1 3.4848 -2.1156 -2.8716 35 1 7.3843 -2.1693 -5.1422 36 1 3.4983 -2.6529 0.0083 37 1 5.0411 -1.7695 0.1056 38 1 3.6518 -1.5692 2.1989 39 1 3.9921 0.0025 1.4329 40 1 0.1104 -3.3721 3.4366 41 1 1.3107 -4.4249 5.4025 42 1 5.0915 -1.8912 6.0740 43 1 5.4372 -2.9392 7.3408 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044779599.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:22 Heat of formation + Delta-G solvation = -30.426989 kcal Electronic energy + Delta-G solvation = -26890.280875 eV Core-core repulsion = 23062.116026 eV Total energy + Delta-G solvation = -3828.164849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.70453 -40.67603 -39.05420 -38.05656 -36.32736 -34.90069 -34.21330 -33.80044 -31.66968 -30.81251 -28.51954 -26.90903 -25.89979 -24.40118 -23.63610 -22.83082 -21.88212 -21.21899 -20.21394 -19.66070 -18.98133 -18.14790 -17.88458 -17.10167 -16.73115 -16.71510 -16.60177 -16.01844 -15.91501 -15.85216 -15.26996 -14.95029 -14.87418 -14.58064 -14.36202 -14.10458 -13.97158 -13.75134 -13.54890 -13.17501 -13.14542 -12.98571 -12.83756 -12.60636 -12.24225 -12.14008 -12.05065 -11.97032 -11.77778 -11.50208 -11.39653 -10.94657 -10.89986 -10.43068 -10.01486 -9.71071 -9.58065 -9.27235 -8.00106 -5.32839 -0.99777 0.08690 0.47961 1.01629 1.39528 1.40930 1.48189 1.61041 1.91930 2.06487 2.33882 2.49758 3.26168 3.31857 3.48489 3.76548 3.81188 3.92170 4.02660 4.06255 4.18035 4.25196 4.29148 4.48975 4.56048 4.56970 4.67739 4.78335 4.83076 4.90677 4.95612 5.02544 5.11715 5.14725 5.23352 5.37758 5.45569 5.62769 5.71668 5.80530 6.17102 6.22714 6.24137 6.93679 7.07598 7.10147 7.86836 8.04375 9.21107 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012857 B = 0.003222 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.253441 B = 8689.147687 C =10012.677010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.152 3.848 3 H 0.094 0.906 4 C -0.129 4.129 5 C 0.176 3.824 6 H 0.055 0.945 7 N -0.752 5.752 8 C -0.222 4.222 9 H 0.065 0.935 10 C -0.062 4.062 11 N -0.983 5.983 12 Si 0.948 3.052 13 H -0.280 1.280 14 H -0.256 1.256 15 H -0.300 1.300 16 C -0.141 4.141 17 C 0.100 3.900 18 N -0.595 5.595 19 C 0.585 3.415 20 O -0.541 6.541 21 C -0.244 4.244 22 C -0.080 4.080 23 C -0.066 4.066 24 C -0.268 4.268 25 C 0.595 3.405 26 N -0.829 5.829 27 O -0.570 6.570 28 S 0.265 5.735 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.363 0.637 35 H 0.256 0.744 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.162 0.838 41 H 0.163 0.837 42 H 0.413 0.587 43 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.024 2.593 20.942 23.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.049 3.951 3 H 0.111 0.889 4 C -0.168 4.168 5 C 0.068 3.932 6 H 0.073 0.927 7 N -0.394 5.394 8 C -0.353 4.353 9 H 0.083 0.917 10 C -0.254 4.254 11 N -0.634 5.634 12 Si 0.776 3.224 13 H -0.207 1.207 14 H -0.181 1.181 15 H -0.227 1.227 16 C -0.182 4.182 17 C -0.024 4.024 18 N -0.327 5.327 19 C 0.372 3.628 20 O -0.421 6.421 21 C -0.365 4.365 22 C -0.112 4.112 23 C -0.099 4.099 24 C -0.390 4.390 25 C 0.379 3.621 26 N -0.393 5.393 27 O -0.451 6.451 28 S 0.535 5.465 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.196 0.804 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.180 0.820 41 H 0.181 0.819 42 H 0.244 0.756 43 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -9.555 3.363 21.105 23.410 hybrid contribution -0.812 -1.809 -0.931 2.190 sum -10.367 1.554 20.174 22.735 Atomic orbital electron populations 1.22085 0.92318 1.02614 1.01553 1.21360 0.95723 0.95722 0.82259 0.88852 1.22236 0.95202 1.01230 0.98156 1.20401 0.92543 0.95003 0.85248 0.92679 1.42840 1.11645 1.55155 1.29783 1.19036 0.88919 1.21168 1.06210 0.91746 1.25406 0.97508 1.02580 0.99873 1.69862 1.17348 1.49150 1.27015 0.85517 0.78672 0.79037 0.79150 1.20665 1.18052 1.22729 1.22432 1.01439 0.99459 0.94846 1.22289 0.79055 1.02185 0.98838 1.48171 1.07859 1.56666 1.20002 1.17340 0.85408 0.78679 0.81356 1.90874 1.17047 1.56845 1.77342 1.25003 1.02559 1.04479 1.04495 1.20569 1.01337 0.93987 0.95331 1.20632 0.92764 1.00700 0.95813 1.25088 1.03013 1.05836 1.05030 1.17159 0.81065 0.81980 0.81881 1.43546 1.24044 1.33421 1.38293 1.90852 1.74229 1.28812 1.51233 1.83785 1.16920 1.26084 1.19744 0.91253 0.91941 0.93209 0.89813 0.92218 0.80440 0.93507 0.92878 0.91270 0.88745 0.88425 0.82035 0.81943 0.75647 0.74611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 7.61 71.98 0.55 -2.43 16 2 C 0.15 3.48 3.49 44.97 0.16 3.64 16 3 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 4 C -0.13 -3.47 4.84 30.67 0.15 -3.32 16 5 C 0.18 5.76 2.73 45.02 0.12 5.88 16 6 H 0.06 1.85 8.08 -2.39 -0.02 1.83 16 7 N -0.75 -32.29 4.92 -322.81 -1.59 -33.88 16 8 C -0.22 -11.83 10.41 84.03 0.87 -10.95 16 9 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 10 C -0.06 -3.52 5.50 84.86 0.47 -3.06 16 11 N -0.98 -61.05 13.97 21.65 0.30 -60.75 16 12 Si 0.95 44.30 27.74 68.60 1.90 46.20 16 13 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 14 H -0.26 -10.86 6.52 99.48 0.65 -10.21 16 15 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 16 C -0.14 -4.02 5.66 30.67 0.17 -3.85 16 17 C 0.10 2.07 5.89 86.36 0.51 2.58 16 18 N -0.59 -13.45 2.97 -799.21 -2.38 -15.83 16 19 C 0.59 14.09 7.38 86.59 0.64 14.73 16 20 O -0.54 -15.51 12.60 -4.11 -0.05 -15.56 16 21 C -0.24 -4.88 5.61 24.24 0.14 -4.74 16 22 C -0.08 -1.49 10.09 21.55 0.22 -1.27 16 23 C -0.07 -1.18 9.88 21.55 0.21 -0.97 16 24 C -0.27 -4.66 6.46 24.24 0.16 -4.50 16 25 C 0.59 11.01 8.08 86.59 0.70 11.71 16 26 N -0.83 -8.31 8.87 -176.07 -1.56 -9.87 16 27 O -0.57 -15.13 17.65 -4.10 -0.07 -15.21 16 28 S 0.26 3.74 18.91 -56.49 -1.07 2.68 16 29 H 0.07 1.72 6.60 -2.38 -0.02 1.70 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 1.31 6.89 -2.39 -0.02 1.29 16 32 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.36 15.36 5.66 -92.71 -0.52 14.84 16 35 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 38 H 0.10 1.68 3.76 -18.41 -0.07 1.61 16 39 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16 41 H 0.16 2.70 8.04 -2.91 -0.02 2.67 16 42 H 0.41 2.18 7.93 -92.71 -0.74 1.45 16 43 H 0.42 2.93 8.93 -92.71 -0.83 2.11 16 Total: -1.00 -73.45 359.30 -0.58 -74.03 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: -1.12 Total: 24.74 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 5.06 Total: 3.45 kcal Atomic # 7 Polarization: -115.11 SS G_CDS: -5.22 Total: -120.33 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -0.12 Total: -30.76 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.90 Total: 46.20 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -1.07 Total: 2.68 kcal Total: -73.45 -0.58 -74.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044779599.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.602 kcal (2) G-P(sol) polarization free energy of solvation -73.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds