Wall clock time and date at job start Tue Mar 31 2020 20:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.58781 * 2 1 4 4 C 1.53195 * 109.58890 * 120.28451 * 2 1 3 5 5 C 1.53040 * 109.30881 * 65.29317 * 4 2 1 6 6 H 1.09002 * 109.46244 * 301.34321 * 5 4 2 7 7 N 1.46504 * 109.46014 * 181.37322 * 5 4 2 8 8 C 1.36935 * 119.99942 * 154.99579 * 7 5 4 9 9 H 1.07999 * 120.00397 * 0.02562 * 8 7 5 10 10 C 1.38813 * 119.99981 * 179.97438 * 8 7 5 11 11 N 1.31624 * 119.99686 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00263 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46641 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46815 * 120.00235 * 12 10 8 15 15 H 1.48492 * 109.47206 * 240.00576 * 12 10 8 16 16 C 1.53036 * 109.54027 * 61.36644 * 5 4 2 17 17 C 1.53190 * 109.31377 * 298.63541 * 16 5 4 18 18 N 1.46928 * 109.58893 * 239.71884 * 2 1 3 19 19 C 1.34773 * 120.63132 * 113.67422 * 18 2 1 20 20 O 1.21621 * 119.99913 * 356.42844 * 19 18 2 21 21 C 1.47171 * 119.99963 * 176.42609 * 19 18 2 22 22 C 1.36615 * 125.15824 * 224.66075 * 21 19 18 23 23 C 1.36804 * 114.74070 * 179.85131 * 22 21 19 24 24 C 1.36610 * 114.74323 * 0.43413 * 23 22 21 25 25 C 1.47174 * 125.16144 * 179.76385 * 24 23 22 26 26 N 1.34771 * 120.00217 * 180.02562 * 25 24 23 27 27 O 1.21624 * 119.99800 * 0.02562 * 25 24 23 28 28 S 1.75833 * 109.68224 * 359.76486 * 24 23 22 29 29 H 1.09002 * 109.46622 * 299.99935 * 1 2 3 30 30 H 1.09001 * 109.46767 * 59.99340 * 1 2 3 31 31 H 1.08998 * 109.47101 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.50110 * 185.24282 * 4 2 1 33 33 H 1.08997 * 109.49702 * 305.31117 * 4 2 1 34 34 H 0.97000 * 119.99565 * 335.00463 * 7 5 4 35 35 H 0.97006 * 119.99465 * 179.97438 * 11 10 8 36 36 H 1.09006 * 109.49722 * 58.58453 * 16 5 4 37 37 H 1.09003 * 109.50332 * 178.68164 * 16 5 4 38 38 H 1.09001 * 109.58678 * 174.41983 * 17 16 5 39 39 H 1.08997 * 109.58691 * 294.70092 * 17 16 5 40 40 H 1.07996 * 122.63075 * 0.03625 * 22 21 19 41 41 H 1.08000 * 122.62607 * 180.18034 * 23 22 21 42 42 H 0.96999 * 120.00347 * 0.02562 * 26 25 24 43 43 H 0.97005 * 119.99766 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7278 1.2463 5 6 1.6445 -2.2034 1.1711 6 1 0.5598 -2.2830 1.0991 7 7 2.1056 -2.8958 2.3770 8 6 1.4701 -4.0330 2.7988 9 1 0.6292 -4.4198 2.2424 10 6 1.9074 -4.6894 3.9412 11 7 2.9326 -4.2183 4.6191 12 14 1.0409 -6.2412 4.5163 13 1 -0.0725 -6.5597 3.5867 14 1 2.0068 -7.3690 4.5360 15 1 0.5001 -6.0286 5.8828 16 6 2.2858 -2.8449 -0.0615 17 6 1.7750 -2.1410 -1.3226 18 7 2.0226 -0.6980 -1.1954 19 6 2.6915 -0.0283 -2.1548 20 8 2.8361 1.1761 -2.0675 21 6 3.2471 -0.7545 -3.3080 22 6 4.4976 -0.5695 -3.8260 23 6 4.7955 -1.3626 -4.9001 24 6 3.7907 -2.2040 -5.2858 25 6 3.8619 -3.1490 -6.4118 26 7 2.8044 -3.9327 -6.7017 27 8 4.8750 -3.2227 -7.0807 28 16 2.3993 -1.9865 -4.2329 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1295 -0.6467 1.2935 33 1 1.6060 -0.2771 2.1370 34 1 2.8611 -2.5486 2.8767 35 1 3.2379 -4.6769 5.4175 36 1 3.3695 -2.7437 -0.0020 37 1 2.0202 -3.9013 -0.1017 38 1 2.3021 -2.5268 -2.1952 39 1 0.7055 -2.3199 -1.4331 40 1 5.1973 0.1446 -3.4176 41 1 5.7488 -1.3236 -5.4062 42 1 1.9963 -3.8736 -6.1686 43 1 2.8513 -4.5553 -7.4442 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044779601.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:27 Heat of formation + Delta-G solvation = -48.410011 kcal Electronic energy + Delta-G solvation = -26809.842347 eV Core-core repulsion = 22980.897695 eV Total energy + Delta-G solvation = -3828.944652 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.56833 -40.67577 -39.19834 -38.02569 -36.27056 -34.89198 -34.07159 -33.47488 -31.28599 -30.73065 -28.64646 -27.03093 -25.91676 -24.54232 -23.66770 -22.88059 -22.32215 -20.44795 -20.14070 -19.38866 -18.82840 -18.26001 -18.04274 -17.09365 -16.80683 -16.72087 -16.24536 -15.99029 -15.79230 -15.63489 -15.32348 -15.05664 -14.93648 -14.53468 -14.31819 -14.21428 -13.99642 -13.57503 -13.40488 -13.19567 -12.96506 -12.89321 -12.79154 -12.46679 -12.27260 -12.10151 -12.09290 -11.96391 -11.70009 -11.53154 -11.21751 -11.10078 -10.89427 -10.88115 -10.08708 -9.77191 -9.58255 -8.97657 -7.90865 -5.19374 -1.00965 0.06157 0.46501 1.00442 1.50474 1.50764 1.57615 1.60364 1.90315 2.05158 2.33475 2.58860 3.24899 3.42983 3.72801 3.80614 3.84233 3.92663 4.04369 4.05726 4.21380 4.24506 4.32239 4.52575 4.53370 4.59396 4.72120 4.80261 4.81240 4.87978 5.01605 5.04401 5.06171 5.11957 5.25776 5.32398 5.49255 5.56297 5.60085 5.72367 6.17496 6.19856 6.30829 6.86395 7.08195 7.37053 8.12797 8.35179 9.33011 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012747 B = 0.003099 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.016668 B = 9032.215896 C =10370.024060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.147 3.853 3 H 0.092 0.908 4 C -0.125 4.125 5 C 0.175 3.825 6 H 0.060 0.940 7 N -0.738 5.738 8 C -0.230 4.230 9 H 0.083 0.917 10 C -0.078 4.078 11 N -0.972 5.972 12 Si 0.968 3.032 13 H -0.261 1.261 14 H -0.299 1.299 15 H -0.298 1.298 16 C -0.140 4.140 17 C 0.100 3.900 18 N -0.590 5.590 19 C 0.586 3.414 20 O -0.562 6.562 21 C -0.244 4.244 22 C -0.081 4.081 23 C -0.065 4.065 24 C -0.265 4.265 25 C 0.596 3.404 26 N -0.828 5.828 27 O -0.569 6.569 28 S 0.273 5.727 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.369 0.631 35 H 0.248 0.752 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.160 0.840 41 H 0.164 0.836 42 H 0.413 0.587 43 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.546 4.453 -22.157 23.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.044 3.956 3 H 0.110 0.890 4 C -0.164 4.164 5 C 0.067 3.933 6 H 0.078 0.922 7 N -0.377 5.377 8 C -0.362 4.362 9 H 0.101 0.899 10 C -0.270 4.270 11 N -0.624 5.624 12 Si 0.798 3.202 13 H -0.185 1.185 14 H -0.226 1.226 15 H -0.226 1.226 16 C -0.181 4.181 17 C -0.024 4.024 18 N -0.321 5.321 19 C 0.373 3.627 20 O -0.442 6.442 21 C -0.366 4.366 22 C -0.113 4.113 23 C -0.099 4.099 24 C -0.387 4.387 25 C 0.380 3.620 26 N -0.392 5.392 27 O -0.450 6.450 28 S 0.543 5.457 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.201 0.799 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.178 0.822 41 H 0.182 0.818 42 H 0.244 0.756 43 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -6.443 4.321 -22.348 23.656 hybrid contribution 1.519 -0.297 0.983 1.833 sum -4.924 4.024 -21.366 22.292 Atomic orbital electron populations 1.22107 0.92715 1.03302 1.03147 1.21195 0.95678 0.96336 0.82358 0.89035 1.22099 1.00545 0.96142 0.97585 1.20437 0.97210 0.89907 0.85775 0.92182 1.42681 1.37661 1.29109 1.28212 1.19675 1.09761 1.01029 1.05743 0.89946 1.25531 0.99689 1.02746 0.99074 1.69836 1.29717 1.42827 1.19985 0.85143 0.77872 0.79481 0.77714 1.18457 1.22617 1.22612 1.22459 1.00157 1.00458 0.95032 1.22287 1.02976 0.78206 0.98917 1.48205 1.54071 1.09946 1.19902 1.17366 0.77537 0.86098 0.81679 1.90795 1.60175 1.14738 1.78482 1.24820 1.01377 1.06367 1.04004 1.20587 0.95222 1.00063 0.95474 1.20620 1.00404 0.93316 0.95536 1.25057 1.01711 1.07097 1.04804 1.17124 0.83403 0.79533 0.81953 1.43531 1.16377 1.42095 1.37228 1.90857 1.32282 1.69669 1.52209 1.83662 1.13108 1.30401 1.18563 0.90259 0.91665 0.91324 0.93291 0.90522 0.79933 0.94304 0.93815 0.90918 0.88745 0.88181 0.82244 0.81806 0.75617 0.74562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.03 71.98 0.65 -2.56 16 2 C 0.15 3.77 3.19 44.97 0.14 3.91 16 3 H 0.09 2.52 7.02 -2.39 -0.02 2.50 16 4 C -0.12 -3.83 5.02 30.67 0.15 -3.68 16 5 C 0.17 6.06 2.53 45.02 0.11 6.17 16 6 H 0.06 2.01 6.44 -2.39 -0.02 2.00 16 7 N -0.74 -34.68 5.12 -322.81 -1.65 -36.33 16 8 C -0.23 -11.89 9.93 84.03 0.83 -11.06 16 9 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 10 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 11 N -0.97 -58.25 13.06 21.65 0.28 -57.97 16 12 Si 0.97 44.29 29.55 68.60 2.03 46.32 16 13 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 14 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 15 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 16 C -0.14 -4.21 5.66 30.67 0.17 -4.04 16 17 C 0.10 2.16 5.46 86.35 0.47 2.63 16 18 N -0.59 -14.55 2.69 -799.08 -2.15 -16.69 16 19 C 0.59 15.66 7.55 86.59 0.65 16.32 16 20 O -0.56 -18.59 16.51 -4.10 -0.07 -18.66 16 21 C -0.24 -5.26 5.50 24.24 0.13 -5.13 16 22 C -0.08 -1.63 10.10 21.55 0.22 -1.41 16 23 C -0.07 -1.23 9.88 21.55 0.21 -1.01 16 24 C -0.27 -4.66 6.46 24.24 0.16 -4.50 16 25 C 0.60 10.91 8.07 86.59 0.70 11.61 16 26 N -0.83 -7.86 8.87 -176.07 -1.56 -9.42 16 27 O -0.57 -15.04 17.65 -4.11 -0.07 -15.11 16 28 S 0.27 3.92 19.14 -56.49 -1.08 2.84 16 29 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.40 5.75 -2.39 -0.01 1.38 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 33 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.37 19.30 7.80 -92.71 -0.72 18.57 16 35 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 36 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.10 1.75 4.00 -16.22 -0.06 1.68 16 39 H 0.10 1.73 7.51 -2.39 -0.02 1.72 16 40 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 41 H 0.16 2.82 8.04 -2.91 -0.02 2.80 16 42 H 0.41 1.90 7.93 -92.71 -0.74 1.16 16 43 H 0.42 2.69 8.93 -92.70 -0.83 1.86 16 Total: -1.00 -72.90 364.26 -0.44 -73.35 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: -1.25 Total: 28.31 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 5.08 Total: 3.38 kcal Atomic # 7 Polarization: -115.34 SS G_CDS: -5.08 Total: -120.42 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -0.14 Total: -33.77 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -1.08 Total: 2.84 kcal Total: -72.90 -0.44 -73.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044779601.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.935 kcal (2) G-P(sol) polarization free energy of solvation -72.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds