Wall clock time and date at job start Tue Mar 31 2020 20:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.59167 * 2 1 4 4 C 1.53202 * 109.69986 * 239.64457 * 2 1 3 5 5 C 1.53041 * 109.31228 * 294.77898 * 4 2 1 6 6 H 1.09006 * 109.46017 * 58.65675 * 5 4 2 7 7 N 1.46498 * 109.45706 * 178.61527 * 5 4 2 8 8 C 1.36939 * 119.99702 * 204.99983 * 7 5 4 9 9 H 1.07995 * 120.00116 * 0.02562 * 8 7 5 10 10 C 1.38814 * 120.00124 * 179.97438 * 8 7 5 11 11 N 1.31623 * 119.99910 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00162 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47153 * 60.00155 * 12 10 8 14 14 H 1.48504 * 109.47098 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47085 * 299.99783 * 12 10 8 16 16 C 1.53041 * 109.53601 * 298.63280 * 5 4 2 17 17 C 1.52757 * 109.38383 * 61.24661 * 16 5 4 18 18 N 1.46921 * 109.58782 * 120.28950 * 2 1 3 19 19 C 1.34779 * 120.63074 * 246.29495 * 18 2 1 20 20 O 1.21625 * 119.99819 * 3.56634 * 19 18 2 21 21 C 1.47168 * 120.00346 * 183.57040 * 19 18 2 22 22 C 1.36611 * 125.16159 * 135.11261 * 21 19 18 23 23 C 1.36800 * 114.74703 * 179.97438 * 22 21 19 24 24 C 1.36619 * 114.74518 * 0.02562 * 23 22 21 25 25 C 1.47160 * 125.16520 * 180.26818 * 24 23 22 26 26 N 1.34778 * 120.00271 * 179.71579 * 25 24 23 27 27 O 1.21624 * 119.99993 * 359.71064 * 25 24 23 28 28 S 1.75834 * 125.16247 * 315.08942 * 21 19 18 29 29 H 1.09001 * 109.46654 * 299.71326 * 1 2 3 30 30 H 1.08995 * 109.47020 * 59.71197 * 1 2 3 31 31 H 1.08992 * 109.47290 * 179.71945 * 1 2 3 32 32 H 1.08997 * 109.49516 * 54.73219 * 4 2 1 33 33 H 1.08996 * 109.49448 * 174.79661 * 4 2 1 34 34 H 0.96993 * 120.00209 * 25.00160 * 7 5 4 35 35 H 0.96997 * 120.00260 * 180.02562 * 11 10 8 36 36 H 1.09009 * 109.49515 * 181.31728 * 16 5 4 37 37 H 1.08992 * 109.50294 * 301.41621 * 16 5 4 38 38 H 1.09001 * 109.51172 * 185.70397 * 17 16 5 39 39 H 1.09004 * 109.43949 * 65.41580 * 17 16 5 40 40 H 1.07999 * 122.62850 * 359.95726 * 22 21 19 41 41 H 1.08004 * 122.63185 * 180.02562 * 23 22 21 42 42 H 0.96997 * 120.00024 * 359.97438 * 26 25 24 43 43 H 0.96996 * 120.00272 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0464 -0.7289 -1.2446 5 6 1.6471 -2.2044 -1.1692 6 1 0.5622 -2.2839 -1.0996 7 7 2.1108 -2.8976 -2.3736 8 6 1.4762 -4.0352 -2.7959 9 1 0.6336 -4.4210 -2.2414 10 6 1.9151 -4.6918 -3.9375 11 7 2.9410 -4.2207 -4.6143 12 14 1.0498 -6.2440 -4.5132 13 1 -0.3749 -5.9390 -4.8002 14 1 1.7066 -6.7486 -5.7458 15 1 1.1304 -7.2785 -3.4510 16 6 2.2857 -2.8449 0.0654 17 6 1.7768 -2.1412 1.3221 18 7 2.0226 -0.6981 1.1952 19 6 2.6920 -0.0287 2.1545 20 8 2.8372 1.1757 2.0670 21 6 3.2475 -0.7550 3.3076 22 6 4.4998 -0.5736 3.8227 23 6 4.7959 -1.3633 4.8997 24 6 3.7913 -2.2054 5.2849 25 6 3.8606 -3.1467 6.4139 26 7 2.8017 -3.9277 6.7061 27 8 4.8734 -3.2200 7.0833 28 16 2.3999 -1.9874 4.2320 29 1 -0.3633 0.5094 0.8926 30 1 -0.3633 0.5183 -0.8874 31 1 -0.3633 -1.0276 -0.0050 32 1 1.6105 -0.2792 -2.1366 33 1 3.1324 -0.6472 -1.2896 34 1 2.8673 -2.5508 -2.8719 35 1 3.2475 -4.6792 -5.4121 36 1 2.0199 -3.9013 0.1057 37 1 3.3694 -2.7438 0.0084 38 1 2.3050 -2.5265 2.1943 39 1 0.7073 -2.3214 1.4310 40 1 5.2012 0.1373 3.4115 41 1 5.7491 -1.3243 5.4060 42 1 1.9938 -3.8690 6.1725 43 1 2.8472 -4.5479 7.4505 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044779602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:30 Heat of formation + Delta-G solvation = -23.844489 kcal Electronic energy + Delta-G solvation = -26811.639047 eV Core-core repulsion = 22983.759636 eV Total energy + Delta-G solvation = -3827.879411 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.46833 -39.86874 -38.06327 -37.07649 -34.65539 -34.17128 -32.80189 -31.92263 -30.18202 -29.37236 -27.40852 -26.15929 -24.26758 -23.17241 -22.58928 -22.04225 -21.07483 -19.54493 -19.17052 -18.11434 -17.41843 -17.23672 -17.07766 -16.04668 -16.01788 -15.31660 -15.09422 -14.96089 -14.85138 -14.11516 -14.08813 -13.73279 -13.62116 -13.43707 -13.15661 -13.13398 -12.83175 -12.50857 -12.44546 -11.99167 -11.83132 -11.42567 -11.36292 -11.00758 -10.93165 -10.85096 -10.66865 -10.55252 -10.28601 -10.21516 -10.10542 -9.80910 -9.70838 -9.21875 -9.02549 -8.78657 -8.67229 -7.04302 -5.83109 -3.12850 -0.17629 0.86006 1.27155 1.84203 2.61920 2.78385 2.98079 2.99392 3.38504 3.43168 3.44674 4.22525 4.45494 4.51831 4.84488 4.87789 5.01606 5.03179 5.13873 5.20834 5.35527 5.46249 5.52504 5.55436 5.62366 5.67985 5.72224 5.81636 5.90170 5.95607 6.08819 6.18968 6.27285 6.29247 6.36199 6.43057 6.51111 6.77504 6.78923 6.95360 7.27240 7.61752 7.72776 7.93748 8.34873 9.46148 10.03040 10.37533 11.39222 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012743 B = 0.003101 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.691124 B = 9026.878897 C =10363.945361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.098 0.902 4 C -0.134 4.134 5 C 0.179 3.821 6 H 0.052 0.948 7 N -0.723 5.723 8 C -0.243 4.243 9 H 0.070 0.930 10 C -0.011 4.011 11 N -0.931 5.931 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 C -0.150 4.150 17 C 0.093 3.907 18 N -0.590 5.590 19 C 0.585 3.415 20 O -0.527 6.527 21 C -0.209 4.209 22 C -0.085 4.085 23 C -0.057 4.057 24 C -0.260 4.260 25 C 0.598 3.402 26 N -0.849 5.849 27 O -0.528 6.528 28 S 0.205 5.795 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.400 0.600 43 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.394 5.280 20.102 21.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.116 0.884 4 C -0.173 4.173 5 C 0.069 3.931 6 H 0.070 0.930 7 N -0.363 5.363 8 C -0.374 4.374 9 H 0.088 0.912 10 C -0.207 4.207 11 N -0.579 5.579 12 Si 0.737 3.263 13 H -0.212 1.212 14 H -0.217 1.217 15 H -0.213 1.213 16 C -0.191 4.191 17 C -0.031 4.031 18 N -0.322 5.322 19 C 0.370 3.630 20 O -0.405 6.405 21 C -0.330 4.330 22 C -0.117 4.117 23 C -0.090 4.090 24 C -0.381 4.381 25 C 0.382 3.618 26 N -0.413 5.413 27 O -0.406 6.406 28 S 0.474 5.526 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.218 0.782 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.175 0.825 41 H 0.176 0.824 42 H 0.229 0.771 43 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -4.189 5.169 20.223 21.290 hybrid contribution 0.864 -0.591 -0.436 1.134 sum -3.325 4.578 19.788 20.581 Atomic orbital electron populations 1.22148 0.94662 1.02929 1.02162 1.21285 0.94273 0.97104 0.83316 0.88394 1.22235 1.01506 0.97277 0.96306 1.20192 0.96815 0.89079 0.87029 0.92989 1.42417 1.38030 1.29200 1.26668 1.19166 1.10401 1.01130 1.06687 0.91220 1.24750 0.98428 0.99424 0.98140 1.69649 1.27488 1.41315 1.19469 0.86291 0.78821 0.83227 0.77959 1.21237 1.21694 1.21264 1.22606 1.01440 1.00625 0.94422 1.22175 1.01375 0.79244 1.00343 1.48166 1.54233 1.09615 1.20180 1.17116 0.78229 0.86397 0.81216 1.90820 1.59004 1.13168 1.77542 1.24904 1.00244 1.04297 1.03587 1.20498 0.95316 1.00253 0.95621 1.20556 0.99820 0.93129 0.95494 1.24882 1.01080 1.07475 1.04709 1.17033 0.83219 0.79257 0.82272 1.43676 1.16979 1.43574 1.37083 1.90870 1.30629 1.68166 1.50900 1.84062 1.15237 1.32689 1.20645 0.92758 0.91009 0.91539 0.90225 0.91693 0.78234 0.93383 0.90341 0.92040 0.90405 0.90802 0.82453 0.82369 0.77119 0.75785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.04 37.16 0.34 -1.54 16 2 C 0.14 1.92 3.19 -67.60 -0.22 1.70 16 3 H 0.10 1.38 7.02 -51.93 -0.36 1.01 16 4 C -0.13 -2.09 5.03 -26.61 -0.13 -2.22 16 5 C 0.18 3.19 2.53 -67.89 -0.17 3.02 16 6 H 0.05 0.93 6.44 -51.93 -0.33 0.60 16 7 N -0.72 -16.98 5.12 -53.38 -0.27 -17.25 16 8 C -0.24 -6.36 9.93 -15.06 -0.15 -6.50 16 9 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 10 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 11 N -0.93 -27.31 13.06 55.49 0.72 -26.59 16 12 Si 0.91 21.56 29.55 -169.99 -5.02 16.53 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 16 C -0.15 -2.36 5.64 -26.83 -0.15 -2.51 16 17 C 0.09 1.13 5.44 -3.93 -0.02 1.11 16 18 N -0.59 -7.79 2.68 -166.83 -0.45 -8.24 16 19 C 0.58 8.18 7.55 -12.63 -0.10 8.08 16 20 O -0.53 -8.85 16.51 5.26 0.09 -8.76 16 21 C -0.21 -2.42 5.50 -36.55 -0.20 -2.63 16 22 C -0.08 -0.90 10.10 -40.69 -0.41 -1.31 16 23 C -0.06 -0.57 9.88 -40.69 -0.40 -0.97 16 24 C -0.26 -2.56 6.46 -36.55 -0.24 -2.80 16 25 C 0.60 6.07 8.07 -12.64 -0.10 5.97 16 26 N -0.85 -5.24 8.87 30.37 0.27 -4.97 16 27 O -0.53 -7.24 17.65 5.26 0.09 -7.15 16 28 S 0.21 1.79 19.13 -107.50 -2.06 -0.27 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.79 5.76 -51.93 -0.30 0.49 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.38 9.79 7.80 -40.82 -0.32 9.47 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.08 1.31 8.14 -51.92 -0.42 0.89 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.08 0.85 4.00 -30.16 -0.12 0.73 16 39 H 0.07 0.80 7.52 -51.93 -0.39 0.41 16 40 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.16 1.41 8.04 -52.48 -0.42 0.99 16 42 H 0.40 1.64 7.93 -40.82 -0.32 1.32 16 43 H 0.41 1.87 8.93 -40.82 -0.36 1.50 16 LS Contribution 364.24 15.07 5.49 5.49 Total: -1.00 -33.31 364.24 -8.63 -41.95 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -5.44 Total: 10.24 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -2.05 Total: -0.99 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: 0.27 Total: -57.04 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.18 Total: -15.91 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.06 Total: -0.27 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.31 -8.63 -41.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044779602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.103 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds