Wall clock time and date at job start Tue Mar 31 2020 20:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.59167 * 2 1 4 4 C 1.53202 * 109.69986 * 239.64457 * 2 1 3 5 5 C 1.53041 * 109.31228 * 294.77898 * 4 2 1 6 6 H 1.09006 * 109.46017 * 58.65675 * 5 4 2 7 7 N 1.46498 * 109.45706 * 178.61527 * 5 4 2 8 8 C 1.36939 * 119.99702 * 204.99983 * 7 5 4 9 9 H 1.07995 * 120.00116 * 0.02562 * 8 7 5 10 10 C 1.38814 * 120.00124 * 179.97438 * 8 7 5 11 11 N 1.31623 * 119.99910 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00162 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47153 * 60.00155 * 12 10 8 14 14 H 1.48504 * 109.47098 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47085 * 299.99783 * 12 10 8 16 16 C 1.53041 * 109.53601 * 298.63280 * 5 4 2 17 17 C 1.52757 * 109.38383 * 61.24661 * 16 5 4 18 18 N 1.46921 * 109.58782 * 120.28950 * 2 1 3 19 19 C 1.34779 * 120.63074 * 246.29495 * 18 2 1 20 20 O 1.21625 * 119.99819 * 3.56634 * 19 18 2 21 21 C 1.47168 * 120.00346 * 183.57040 * 19 18 2 22 22 C 1.36611 * 125.16159 * 135.11261 * 21 19 18 23 23 C 1.36800 * 114.74703 * 179.97438 * 22 21 19 24 24 C 1.36619 * 114.74518 * 0.02562 * 23 22 21 25 25 C 1.47160 * 125.16520 * 180.26818 * 24 23 22 26 26 N 1.34778 * 120.00271 * 179.71579 * 25 24 23 27 27 O 1.21624 * 119.99993 * 359.71064 * 25 24 23 28 28 S 1.75834 * 125.16247 * 315.08942 * 21 19 18 29 29 H 1.09001 * 109.46654 * 299.71326 * 1 2 3 30 30 H 1.08995 * 109.47020 * 59.71197 * 1 2 3 31 31 H 1.08992 * 109.47290 * 179.71945 * 1 2 3 32 32 H 1.08997 * 109.49516 * 54.73219 * 4 2 1 33 33 H 1.08996 * 109.49448 * 174.79661 * 4 2 1 34 34 H 0.96993 * 120.00209 * 25.00160 * 7 5 4 35 35 H 0.96997 * 120.00260 * 180.02562 * 11 10 8 36 36 H 1.09009 * 109.49515 * 181.31728 * 16 5 4 37 37 H 1.08992 * 109.50294 * 301.41621 * 16 5 4 38 38 H 1.09001 * 109.51172 * 185.70397 * 17 16 5 39 39 H 1.09004 * 109.43949 * 65.41580 * 17 16 5 40 40 H 1.07999 * 122.62850 * 359.95726 * 22 21 19 41 41 H 1.08004 * 122.63185 * 180.02562 * 23 22 21 42 42 H 0.96997 * 120.00024 * 359.97438 * 26 25 24 43 43 H 0.96996 * 120.00272 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0464 -0.7289 -1.2446 5 6 1.6471 -2.2044 -1.1692 6 1 0.5622 -2.2839 -1.0996 7 7 2.1108 -2.8976 -2.3736 8 6 1.4762 -4.0352 -2.7959 9 1 0.6336 -4.4210 -2.2414 10 6 1.9151 -4.6918 -3.9375 11 7 2.9410 -4.2207 -4.6143 12 14 1.0498 -6.2440 -4.5132 13 1 -0.3749 -5.9390 -4.8002 14 1 1.7066 -6.7486 -5.7458 15 1 1.1304 -7.2785 -3.4510 16 6 2.2857 -2.8449 0.0654 17 6 1.7768 -2.1412 1.3221 18 7 2.0226 -0.6981 1.1952 19 6 2.6920 -0.0287 2.1545 20 8 2.8372 1.1757 2.0670 21 6 3.2475 -0.7550 3.3076 22 6 4.4998 -0.5736 3.8227 23 6 4.7959 -1.3633 4.8997 24 6 3.7913 -2.2054 5.2849 25 6 3.8606 -3.1467 6.4139 26 7 2.8017 -3.9277 6.7061 27 8 4.8734 -3.2200 7.0833 28 16 2.3999 -1.9874 4.2320 29 1 -0.3633 0.5094 0.8926 30 1 -0.3633 0.5183 -0.8874 31 1 -0.3633 -1.0276 -0.0050 32 1 1.6105 -0.2792 -2.1366 33 1 3.1324 -0.6472 -1.2896 34 1 2.8673 -2.5508 -2.8719 35 1 3.2475 -4.6792 -5.4121 36 1 2.0199 -3.9013 0.1057 37 1 3.3694 -2.7438 0.0084 38 1 2.3050 -2.5265 2.1943 39 1 0.7073 -2.3214 1.4310 40 1 5.2012 0.1373 3.4115 41 1 5.7491 -1.3243 5.4060 42 1 1.9938 -3.8690 6.1725 43 1 2.8472 -4.5479 7.4505 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044779602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:29 Heat of formation + Delta-G solvation = -48.174058 kcal Electronic energy + Delta-G solvation = -26812.694056 eV Core-core repulsion = 22983.759636 eV Total energy + Delta-G solvation = -3828.934420 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.57658 -40.67654 -39.20370 -38.02677 -36.26825 -34.89228 -34.07165 -33.48844 -31.29894 -30.73124 -28.65344 -27.03222 -25.91435 -24.53151 -23.66642 -22.88131 -22.32679 -20.44921 -20.14073 -19.38811 -18.82549 -18.26095 -18.04435 -17.09569 -16.80685 -16.71683 -16.24595 -15.99191 -15.79446 -15.64530 -15.31474 -15.05997 -14.94043 -14.53503 -14.31876 -14.21857 -13.99541 -13.57274 -13.40607 -13.20083 -12.96681 -12.84253 -12.76650 -12.46050 -12.27471 -12.20376 -12.10026 -11.96166 -11.69731 -11.53174 -11.21418 -11.10215 -10.89387 -10.85810 -10.08774 -9.77320 -9.58222 -8.97556 -7.90446 -5.19115 -1.01008 0.06049 0.46514 1.00494 1.50657 1.52738 1.57485 1.58675 1.90308 2.05081 2.33473 2.59231 3.24778 3.42920 3.73048 3.80629 3.84092 3.92534 4.04340 4.06108 4.21457 4.24501 4.32068 4.52628 4.53324 4.59548 4.72013 4.80241 4.81635 4.87944 5.01543 5.04334 5.06096 5.11904 5.25679 5.32323 5.49199 5.55802 5.60080 5.72383 6.17441 6.19789 6.30922 6.86340 7.08165 7.37194 8.13110 8.35526 9.33059 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012743 B = 0.003101 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.691124 B = 9026.878897 C =10363.945361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.147 3.853 3 H 0.092 0.908 4 C -0.125 4.125 5 C 0.175 3.825 6 H 0.060 0.940 7 N -0.738 5.738 8 C -0.234 4.234 9 H 0.082 0.918 10 C -0.077 4.077 11 N -0.973 5.973 12 Si 0.969 3.031 13 H -0.277 1.277 14 H -0.302 1.302 15 H -0.276 1.276 16 C -0.141 4.141 17 C 0.100 3.900 18 N -0.590 5.590 19 C 0.586 3.414 20 O -0.561 6.561 21 C -0.244 4.244 22 C -0.081 4.081 23 C -0.065 4.065 24 C -0.265 4.265 25 C 0.596 3.404 26 N -0.828 5.828 27 O -0.569 6.569 28 S 0.273 5.727 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.369 0.631 35 H 0.249 0.751 36 H 0.072 0.928 37 H 0.043 0.957 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.160 0.840 41 H 0.165 0.835 42 H 0.413 0.587 43 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.519 4.423 22.044 23.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.044 3.956 3 H 0.110 0.890 4 C -0.164 4.164 5 C 0.067 3.933 6 H 0.078 0.922 7 N -0.376 5.376 8 C -0.365 4.365 9 H 0.100 0.900 10 C -0.269 4.269 11 N -0.624 5.624 12 Si 0.798 3.202 13 H -0.203 1.203 14 H -0.229 1.229 15 H -0.203 1.203 16 C -0.182 4.182 17 C -0.024 4.024 18 N -0.321 5.321 19 C 0.373 3.627 20 O -0.442 6.442 21 C -0.366 4.366 22 C -0.114 4.114 23 C -0.099 4.099 24 C -0.387 4.387 25 C 0.380 3.620 26 N -0.392 5.392 27 O -0.450 6.450 28 S 0.543 5.457 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.201 0.799 35 H 0.057 0.943 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.178 0.822 41 H 0.182 0.818 42 H 0.244 0.756 43 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -6.403 4.289 22.219 23.518 hybrid contribution 1.495 -0.297 -0.954 1.798 sum -4.908 3.992 21.265 22.187 Atomic orbital electron populations 1.22103 0.92700 1.03308 1.03148 1.21201 0.95678 0.96340 0.82341 0.89026 1.22100 1.00531 0.96138 0.97607 1.20434 0.97187 0.89899 0.85792 0.92201 1.42659 1.37544 1.29065 1.28374 1.19605 1.09828 1.01165 1.05947 0.89999 1.25532 0.99646 1.02745 0.99017 1.69818 1.29609 1.42900 1.20035 0.85274 0.77879 0.79968 0.77029 1.20305 1.22912 1.20256 1.22386 1.00184 1.00474 0.95112 1.22199 1.02996 0.78225 0.98943 1.48204 1.54067 1.09919 1.19934 1.17369 0.77532 0.86103 0.81680 1.90796 1.60166 1.14743 1.78482 1.24818 1.01340 1.06366 1.04041 1.20584 0.95199 1.00096 0.95474 1.20622 1.00412 0.93327 0.95509 1.25057 1.01745 1.07117 1.04760 1.17122 0.83405 0.79502 0.81981 1.43531 1.16322 1.42344 1.37039 1.90857 1.32339 1.69529 1.52289 1.83664 1.13111 1.30275 1.18679 0.91643 0.90260 0.91334 0.90542 0.93282 0.79935 0.94272 0.90914 0.93846 0.88737 0.88194 0.82242 0.81802 0.75619 0.74565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.04 71.98 0.65 -2.56 16 2 C 0.15 3.78 3.19 44.98 0.14 3.92 16 3 H 0.09 2.53 7.02 -2.39 -0.02 2.51 16 4 C -0.12 -3.85 5.03 30.68 0.15 -3.69 16 5 C 0.18 6.08 2.53 45.02 0.11 6.20 16 6 H 0.06 2.01 6.44 -2.38 -0.02 2.00 16 7 N -0.74 -34.75 5.12 -322.81 -1.65 -36.41 16 8 C -0.23 -12.10 9.93 84.03 0.83 -11.27 16 9 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 10 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 11 N -0.97 -58.29 13.06 21.65 0.28 -58.01 16 12 Si 0.97 44.26 29.55 68.60 2.03 46.29 16 13 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 14 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 15 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 16 C -0.14 -4.24 5.64 30.53 0.17 -4.07 16 17 C 0.10 2.17 5.44 86.22 0.47 2.64 16 18 N -0.59 -14.58 2.68 -799.97 -2.15 -16.73 16 19 C 0.59 15.69 7.55 86.59 0.65 16.34 16 20 O -0.56 -18.61 16.51 -4.11 -0.07 -18.68 16 21 C -0.24 -5.27 5.50 24.24 0.13 -5.14 16 22 C -0.08 -1.64 10.10 21.55 0.22 -1.42 16 23 C -0.07 -1.23 9.88 21.55 0.21 -1.01 16 24 C -0.27 -4.67 6.46 24.24 0.16 -4.52 16 25 C 0.60 10.93 8.07 86.59 0.70 11.63 16 26 N -0.83 -7.90 8.87 -176.07 -1.56 -9.46 16 27 O -0.57 -15.05 17.65 -4.11 -0.07 -15.13 16 28 S 0.27 3.93 19.13 -56.49 -1.08 2.85 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.40 5.76 -2.39 -0.01 1.39 16 32 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.37 19.33 7.80 -92.71 -0.72 18.61 16 35 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 36 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 37 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.10 1.76 4.00 -16.23 -0.06 1.69 16 39 H 0.10 1.74 7.52 -2.38 -0.02 1.72 16 40 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 41 H 0.16 2.83 8.04 -2.91 -0.02 2.80 16 42 H 0.41 1.91 7.93 -92.71 -0.74 1.18 16 43 H 0.42 2.70 8.93 -92.71 -0.83 1.88 16 Total: -1.00 -72.83 364.24 -0.45 -73.28 By element: Atomic # 1 Polarization: 29.99 SS G_CDS: -1.25 Total: 28.74 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 5.08 Total: 3.25 kcal Atomic # 7 Polarization: -115.53 SS G_CDS: -5.08 Total: -120.60 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -0.14 Total: -33.81 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -1.08 Total: 2.85 kcal Total: -72.83 -0.45 -73.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044779602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.106 kcal (2) G-P(sol) polarization free energy of solvation -72.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds