Wall clock time and date at job start Tue Mar 31 2020 20:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.69577 * 2 1 4 4 C 1.52761 * 109.43298 * 120.15846 * 2 1 3 5 5 C 1.53046 * 109.37786 * 65.42750 * 4 2 1 6 6 H 1.08997 * 109.46446 * 301.21460 * 5 4 2 7 7 N 1.46505 * 109.44601 * 181.25101 * 5 4 2 8 8 C 1.36932 * 120.00189 * 154.93813 * 7 5 4 9 9 H 1.08000 * 119.99740 * 0.02562 * 8 7 5 10 10 C 1.38812 * 120.00602 * 180.02562 * 8 7 5 11 11 N 1.31612 * 120.00365 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 119.99548 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.46653 * 90.00037 * 12 10 8 14 14 H 1.48499 * 109.47295 * 210.00050 * 12 10 8 15 15 H 1.48496 * 109.47200 * 330.00528 * 12 10 8 16 16 C 1.53043 * 109.53824 * 61.24080 * 5 4 2 17 17 C 1.53191 * 109.31345 * 298.63177 * 16 5 4 18 18 N 1.46925 * 109.58821 * 239.64383 * 2 1 3 19 19 C 1.34775 * 120.62783 * 113.84173 * 18 2 1 20 20 O 1.21680 * 120.00204 * 355.84666 * 19 18 2 21 21 C 1.46736 * 119.99592 * 176.12605 * 19 18 2 22 22 C 1.34883 * 125.05386 * 224.73024 * 21 19 18 23 23 C 1.38933 * 113.65336 * 179.86595 * 22 21 19 24 24 C 1.47335 * 122.96074 * 180.18497 * 23 22 21 25 25 N 1.34772 * 119.99867 * 180.22113 * 24 23 22 26 26 O 1.21612 * 120.00032 * 0.22845 * 24 23 22 27 27 C 1.36660 * 114.07448 * 0.41295 * 23 22 21 28 28 S 1.70589 * 110.53337 * 359.77518 * 27 23 22 29 29 H 1.08998 * 109.46489 * 180.35506 * 1 2 3 30 30 H 1.08995 * 109.46935 * 300.35417 * 1 2 3 31 31 H 1.08997 * 109.47310 * 60.36142 * 1 2 3 32 32 H 1.08997 * 109.56657 * 305.39703 * 4 2 1 33 33 H 1.08995 * 109.38633 * 185.35034 * 4 2 1 34 34 H 0.96997 * 119.99703 * 334.94341 * 7 5 4 35 35 H 0.97001 * 120.00072 * 180.02562 * 11 10 8 36 36 H 1.08995 * 109.49693 * 178.67933 * 16 5 4 37 37 H 1.09005 * 109.52113 * 58.60227 * 16 5 4 38 38 H 1.08999 * 109.58266 * 294.85019 * 17 16 5 39 39 H 1.08997 * 109.58866 * 174.42058 * 17 16 5 40 40 H 1.07998 * 123.16789 * 0.02809 * 22 21 19 41 41 H 0.97001 * 120.00526 * 0.02562 * 25 24 23 42 42 H 0.97001 * 120.00410 * 179.97438 * 25 24 23 43 43 H 1.08009 * 124.73162 * 179.75033 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0383 -0.7237 1.2456 5 6 1.6411 -2.1999 1.1727 6 1 0.5566 -2.2811 1.0997 7 7 2.1018 -2.8892 2.3806 8 6 1.4666 -4.0257 2.8048 9 1 0.6262 -4.4142 2.2487 10 6 1.9027 -4.6786 3.9496 11 7 1.2925 -5.7712 4.3570 12 14 3.3568 -4.0070 4.9110 13 1 2.8714 -3.0528 5.9402 14 1 4.0725 -5.1272 5.5729 15 1 4.2822 -3.3071 3.9843 16 6 2.2845 -2.8430 -0.0580 17 6 1.7742 -2.1421 -1.3210 18 7 2.0226 -0.6995 -1.1944 19 6 2.6945 -0.0317 -2.1531 20 8 2.8327 1.1745 -2.0714 21 6 3.2539 -0.7584 -3.2986 22 6 4.4913 -0.5748 -3.8031 23 6 4.7773 -1.3924 -4.8893 24 6 6.0704 -1.3646 -5.5951 25 7 6.2823 -2.1816 -6.6457 26 8 6.9464 -0.6045 -5.2294 27 6 3.7518 -2.2212 -5.2486 28 16 2.4092 -1.9916 -4.2216 29 1 -0.3632 -1.0277 0.0064 30 1 -0.3633 0.5193 0.8868 31 1 -0.3634 0.5082 -0.8932 32 1 1.5987 -0.2722 2.1350 33 1 3.1240 -0.6411 1.2943 34 1 2.8568 -2.5405 2.8798 35 1 1.5971 -6.2272 5.1571 36 1 2.0203 -3.8997 -0.0964 37 1 3.3681 -2.7408 0.0022 38 1 0.7045 -2.3204 -1.4309 39 1 2.3027 -2.5288 -2.1924 40 1 5.1943 0.1386 -3.3990 41 1 5.5835 -2.7878 -6.9375 42 1 7.1335 -2.1631 -7.1106 43 1 3.7865 -2.9233 -6.0686 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044874310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:33 Heat of formation + Delta-G solvation = -21.546939 kcal Electronic energy + Delta-G solvation = -26888.293297 eV Core-core repulsion = 23060.513516 eV Total energy + Delta-G solvation = -3827.779781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.56391 -40.01962 -37.98905 -36.94277 -34.76847 -34.14503 -32.81396 -31.92212 -30.23789 -29.69983 -27.52190 -25.93422 -24.52634 -23.71074 -22.96895 -21.43292 -20.61979 -19.46865 -19.27131 -18.38959 -17.56704 -17.39459 -17.20206 -16.39537 -15.58071 -15.37850 -15.12278 -14.98575 -14.69427 -14.12747 -13.95209 -13.88543 -13.77652 -13.40134 -13.20153 -13.06672 -12.77128 -12.71490 -12.51749 -12.13962 -11.91309 -11.61024 -11.47443 -11.08875 -11.00118 -10.91634 -10.62206 -10.41653 -10.26624 -10.11434 -10.06700 -9.80523 -9.63750 -9.33778 -9.02622 -8.78933 -8.67145 -7.33498 -5.82573 -3.18512 0.07245 0.92398 1.34860 1.47450 2.64619 2.89963 3.10546 3.17767 3.34791 3.38363 3.43074 4.24921 4.46462 4.54845 4.63243 4.82080 4.86082 4.97973 5.03514 5.15155 5.31941 5.38766 5.44389 5.49182 5.57776 5.65368 5.67241 5.74988 5.82477 5.92965 5.98215 6.13207 6.19145 6.30068 6.32891 6.36603 6.47269 6.72807 6.87797 6.89910 7.29734 7.86908 7.92498 7.99245 8.36480 9.14612 9.87610 10.07167 11.35532 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013787 B = 0.003062 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.353131 B = 9142.843237 C = 9903.869880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.099 0.901 4 C -0.139 4.139 5 C 0.184 3.816 6 H 0.062 0.938 7 N -0.748 5.748 8 C -0.245 4.245 9 H 0.091 0.909 10 C 0.006 3.994 11 N -0.933 5.933 12 Si 0.883 3.117 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.150 4.150 17 C 0.095 3.905 18 N -0.593 5.593 19 C 0.589 3.411 20 O -0.529 6.529 21 C -0.260 4.260 22 C -0.024 4.024 23 C -0.160 4.160 24 C 0.583 3.417 25 N -0.851 5.851 26 O -0.535 6.535 27 C -0.221 4.221 28 S 0.274 5.726 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.361 0.639 35 H 0.260 0.740 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.160 0.840 41 H 0.400 0.600 42 H 0.406 0.594 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.702 6.650 -23.173 24.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.117 0.883 4 C -0.178 4.178 5 C 0.074 3.926 6 H 0.079 0.921 7 N -0.389 5.389 8 C -0.375 4.375 9 H 0.108 0.892 10 C -0.190 4.190 11 N -0.580 5.580 12 Si 0.713 3.287 13 H -0.211 1.211 14 H -0.218 1.218 15 H -0.203 1.203 16 C -0.191 4.191 17 C -0.029 4.029 18 N -0.326 5.326 19 C 0.375 3.625 20 O -0.407 6.407 21 C -0.380 4.380 22 C -0.055 4.055 23 C -0.178 4.178 24 C 0.367 3.633 25 N -0.414 5.414 26 O -0.412 6.412 27 C -0.361 4.361 28 S 0.543 5.457 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.194 0.806 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.177 0.823 41 H 0.229 0.771 42 H 0.237 0.763 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.584 6.981 -22.603 23.664 hybrid contribution 2.617 0.326 0.180 2.643 sum 3.201 7.307 -22.423 23.800 Atomic orbital electron populations 1.22163 0.94564 1.03040 1.02218 1.21139 0.94380 0.97071 0.83256 0.88346 1.22208 1.01475 0.97363 0.96772 1.20177 0.97449 0.88755 0.86233 0.92051 1.42801 1.37791 1.30539 1.27806 1.19043 1.11345 0.99892 1.07173 0.89158 1.24664 0.98913 0.97210 0.98195 1.69692 1.42853 1.19548 1.25950 0.86576 0.83474 0.78194 0.80421 1.21050 1.21763 1.20339 1.22641 1.01194 1.00987 0.94260 1.22216 1.01451 0.79241 1.00013 1.48146 1.54490 1.09605 1.20316 1.16985 0.77984 0.86375 0.81117 1.90828 1.59121 1.13187 1.77591 1.24170 1.00771 1.07355 1.05693 1.20195 0.95015 0.97369 0.92896 1.18971 0.95756 1.02109 1.00959 1.17629 0.86322 0.79700 0.79612 1.43659 1.20627 1.42964 1.34191 1.90862 1.45067 1.39409 1.65903 1.26238 0.99641 1.04345 1.05855 1.83318 1.13771 1.30271 1.18346 0.91422 0.91045 0.92666 0.90138 0.91829 0.80619 0.93020 0.89921 0.92122 0.90552 0.90447 0.82286 0.77149 0.76259 0.80740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.02 37.16 0.34 -1.54 16 2 C 0.14 1.92 3.18 -67.82 -0.22 1.71 16 3 H 0.10 1.38 7.03 -51.93 -0.36 1.02 16 4 C -0.14 -2.09 4.99 -26.83 -0.13 -2.22 16 5 C 0.18 3.19 2.53 -67.88 -0.17 3.02 16 6 H 0.06 1.09 6.43 -51.93 -0.33 0.75 16 7 N -0.75 -16.68 4.92 -53.38 -0.26 -16.94 16 8 C -0.24 -6.54 10.41 -15.06 -0.16 -6.70 16 9 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 10 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 11 N -0.93 -28.49 13.97 55.49 0.78 -27.72 16 12 Si 0.88 21.70 27.74 -169.99 -4.71 16.99 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 15 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 16 C -0.15 -2.32 5.66 -26.61 -0.15 -2.47 16 17 C 0.09 1.14 5.46 -3.71 -0.02 1.12 16 18 N -0.59 -7.86 2.68 -166.98 -0.45 -8.30 16 19 C 0.59 8.46 7.52 -12.83 -0.10 8.36 16 20 O -0.53 -9.21 16.50 5.21 0.09 -9.13 16 21 C -0.26 -3.09 5.42 -37.34 -0.20 -3.30 16 22 C -0.02 -0.30 9.69 -40.51 -0.39 -0.69 16 23 C -0.16 -1.58 5.82 -106.51 -0.62 -2.20 16 24 C 0.58 6.07 8.06 -12.56 -0.10 5.97 16 25 N -0.85 -4.72 8.84 30.41 0.27 -4.45 16 26 O -0.54 -7.93 17.52 5.27 0.09 -7.84 16 27 C -0.22 -1.49 10.41 30.16 0.31 -1.18 16 28 S 0.27 2.15 19.81 -107.50 -2.13 0.02 16 29 H 0.07 0.80 5.74 -51.93 -0.30 0.50 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.36 8.11 5.66 -40.82 -0.23 7.88 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 36 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.08 0.82 7.52 -51.93 -0.39 0.43 16 39 H 0.08 0.81 3.98 -29.67 -0.12 0.70 16 40 H 0.16 2.13 7.98 -52.49 -0.42 1.71 16 41 H 0.40 0.95 7.29 -40.82 -0.30 0.65 16 42 H 0.41 1.78 8.93 -40.82 -0.36 1.42 16 43 H 0.18 0.48 6.99 -52.48 -0.37 0.11 16 LS Contribution 359.15 15.07 5.41 5.41 Total: -1.00 -35.67 359.15 -7.94 -43.61 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -5.31 Total: 8.39 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -1.71 Total: -0.03 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: 0.33 Total: -57.42 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: 0.18 Total: -16.97 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.99 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.13 Total: 0.02 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.67 -7.94 -43.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044874310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.058 kcal (2) G-P(sol) polarization free energy of solvation -35.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds