Wall clock time and date at job start Tue Mar 31 2020 20:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.69577 * 2 1 4 4 C 1.52761 * 109.43298 * 120.15846 * 2 1 3 5 5 C 1.53046 * 109.37786 * 65.42750 * 4 2 1 6 6 H 1.08997 * 109.46446 * 301.21460 * 5 4 2 7 7 N 1.46505 * 109.44601 * 181.25101 * 5 4 2 8 8 C 1.36932 * 120.00189 * 154.93813 * 7 5 4 9 9 H 1.08000 * 119.99740 * 0.02562 * 8 7 5 10 10 C 1.38812 * 120.00602 * 180.02562 * 8 7 5 11 11 N 1.31612 * 120.00365 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 119.99548 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.46653 * 90.00037 * 12 10 8 14 14 H 1.48499 * 109.47295 * 210.00050 * 12 10 8 15 15 H 1.48496 * 109.47200 * 330.00528 * 12 10 8 16 16 C 1.53043 * 109.53824 * 61.24080 * 5 4 2 17 17 C 1.53191 * 109.31345 * 298.63177 * 16 5 4 18 18 N 1.46925 * 109.58821 * 239.64383 * 2 1 3 19 19 C 1.34775 * 120.62783 * 113.84173 * 18 2 1 20 20 O 1.21680 * 120.00204 * 355.84666 * 19 18 2 21 21 C 1.46736 * 119.99592 * 176.12605 * 19 18 2 22 22 C 1.34883 * 125.05386 * 224.73024 * 21 19 18 23 23 C 1.38933 * 113.65336 * 179.86595 * 22 21 19 24 24 C 1.47335 * 122.96074 * 180.18497 * 23 22 21 25 25 N 1.34772 * 119.99867 * 180.22113 * 24 23 22 26 26 O 1.21612 * 120.00032 * 0.22845 * 24 23 22 27 27 C 1.36660 * 114.07448 * 0.41295 * 23 22 21 28 28 S 1.70589 * 110.53337 * 359.77518 * 27 23 22 29 29 H 1.08998 * 109.46489 * 180.35506 * 1 2 3 30 30 H 1.08995 * 109.46935 * 300.35417 * 1 2 3 31 31 H 1.08997 * 109.47310 * 60.36142 * 1 2 3 32 32 H 1.08997 * 109.56657 * 305.39703 * 4 2 1 33 33 H 1.08995 * 109.38633 * 185.35034 * 4 2 1 34 34 H 0.96997 * 119.99703 * 334.94341 * 7 5 4 35 35 H 0.97001 * 120.00072 * 180.02562 * 11 10 8 36 36 H 1.08995 * 109.49693 * 178.67933 * 16 5 4 37 37 H 1.09005 * 109.52113 * 58.60227 * 16 5 4 38 38 H 1.08999 * 109.58266 * 294.85019 * 17 16 5 39 39 H 1.08997 * 109.58866 * 174.42058 * 17 16 5 40 40 H 1.07998 * 123.16789 * 0.02809 * 22 21 19 41 41 H 0.97001 * 120.00526 * 0.02562 * 25 24 23 42 42 H 0.97001 * 120.00410 * 179.97438 * 25 24 23 43 43 H 1.08009 * 124.73162 * 179.75033 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0383 -0.7237 1.2456 5 6 1.6411 -2.1999 1.1727 6 1 0.5566 -2.2811 1.0997 7 7 2.1018 -2.8892 2.3806 8 6 1.4666 -4.0257 2.8048 9 1 0.6262 -4.4142 2.2487 10 6 1.9027 -4.6786 3.9496 11 7 1.2925 -5.7712 4.3570 12 14 3.3568 -4.0070 4.9110 13 1 2.8714 -3.0528 5.9402 14 1 4.0725 -5.1272 5.5729 15 1 4.2822 -3.3071 3.9843 16 6 2.2845 -2.8430 -0.0580 17 6 1.7742 -2.1421 -1.3210 18 7 2.0226 -0.6995 -1.1944 19 6 2.6945 -0.0317 -2.1531 20 8 2.8327 1.1745 -2.0714 21 6 3.2539 -0.7584 -3.2986 22 6 4.4913 -0.5748 -3.8031 23 6 4.7773 -1.3924 -4.8893 24 6 6.0704 -1.3646 -5.5951 25 7 6.2823 -2.1816 -6.6457 26 8 6.9464 -0.6045 -5.2294 27 6 3.7518 -2.2212 -5.2486 28 16 2.4092 -1.9916 -4.2216 29 1 -0.3632 -1.0277 0.0064 30 1 -0.3633 0.5193 0.8868 31 1 -0.3634 0.5082 -0.8932 32 1 1.5987 -0.2722 2.1350 33 1 3.1240 -0.6411 1.2943 34 1 2.8568 -2.5405 2.8798 35 1 1.5971 -6.2272 5.1571 36 1 2.0203 -3.8997 -0.0964 37 1 3.3681 -2.7408 0.0022 38 1 0.7045 -2.3204 -1.4309 39 1 2.3027 -2.5288 -2.1924 40 1 5.1943 0.1386 -3.3990 41 1 5.5835 -2.7878 -6.9375 42 1 7.1335 -2.1631 -7.1106 43 1 3.7865 -2.9233 -6.0686 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044874310.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:32 Heat of formation + Delta-G solvation = -49.330015 kcal Electronic energy + Delta-G solvation = -26889.498062 eV Core-core repulsion = 23060.513516 eV Total energy + Delta-G solvation = -3828.984546 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.62150 -40.85723 -39.17046 -37.85622 -36.38668 -34.84989 -34.10025 -33.56688 -31.63877 -30.75818 -28.71468 -26.69612 -25.91869 -24.76432 -24.43823 -22.75245 -21.67196 -20.41451 -20.19997 -19.75473 -18.94729 -18.23323 -18.03548 -17.43658 -16.80947 -16.46541 -16.33545 -15.91996 -15.86785 -15.58342 -15.23938 -15.02219 -14.77403 -14.67954 -14.41443 -14.27039 -13.84609 -13.81192 -13.63784 -13.44973 -13.04167 -12.98302 -12.81693 -12.46297 -12.34990 -12.20462 -12.05834 -11.96436 -11.77588 -11.30377 -11.17851 -11.11899 -10.91702 -10.76371 -10.14767 -9.77053 -9.56198 -9.26322 -7.99705 -5.31955 -0.64640 0.17369 0.60504 0.66098 1.39679 1.40153 1.47350 1.59177 1.92419 2.28983 2.49722 2.55615 3.30932 3.33951 3.51486 3.78877 3.88387 3.93219 4.03207 4.04002 4.10608 4.20174 4.26720 4.49443 4.50795 4.54168 4.61046 4.70458 4.75522 4.89459 4.95613 5.00860 5.02608 5.04261 5.22810 5.30591 5.47722 5.56953 5.81428 5.83956 6.22297 6.24723 6.39215 6.91006 7.10419 7.26668 7.87379 8.04934 9.21521 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013787 B = 0.003062 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.353131 B = 9142.843237 C = 9903.869880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.146 3.854 3 H 0.091 0.909 4 C -0.130 4.130 5 C 0.177 3.823 6 H 0.063 0.937 7 N -0.753 5.753 8 C -0.219 4.219 9 H 0.067 0.933 10 C -0.061 4.061 11 N -0.982 5.982 12 Si 0.946 3.054 13 H -0.281 1.281 14 H -0.300 1.300 15 H -0.259 1.259 16 C -0.142 4.142 17 C 0.101 3.899 18 N -0.592 5.592 19 C 0.588 3.412 20 O -0.570 6.570 21 C -0.298 4.298 22 C -0.035 4.035 23 C -0.187 4.187 24 C 0.580 3.420 25 N -0.824 5.824 26 O -0.594 6.594 27 C -0.186 4.186 28 S 0.340 5.660 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.054 0.946 34 H 0.361 0.639 35 H 0.256 0.744 36 H 0.072 0.928 37 H 0.049 0.951 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.129 0.871 41 H 0.419 0.581 42 H 0.414 0.586 43 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.168 6.078 -25.794 26.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.043 3.957 3 H 0.109 0.891 4 C -0.169 4.169 5 C 0.070 3.930 6 H 0.081 0.919 7 N -0.395 5.395 8 C -0.350 4.350 9 H 0.085 0.915 10 C -0.253 4.253 11 N -0.633 5.633 12 Si 0.774 3.226 13 H -0.207 1.207 14 H -0.227 1.227 15 H -0.184 1.184 16 C -0.183 4.183 17 C -0.022 4.022 18 N -0.323 5.323 19 C 0.376 3.624 20 O -0.451 6.451 21 C -0.418 4.418 22 C -0.066 4.066 23 C -0.203 4.203 24 C 0.365 3.635 25 N -0.388 5.388 26 O -0.476 6.476 27 C -0.326 4.326 28 S 0.608 5.392 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.194 0.806 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.147 0.853 41 H 0.251 0.749 42 H 0.247 0.753 43 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 0.038 6.403 -25.307 26.104 hybrid contribution 2.693 0.463 0.842 2.860 sum 2.731 6.866 -24.465 25.557 Atomic orbital electron populations 1.22115 0.92807 1.03269 1.03141 1.21094 0.95663 0.96381 0.82547 0.89116 1.22095 1.00972 0.95796 0.98034 1.20426 0.97603 0.89867 0.85147 0.91927 1.42878 1.37559 1.29623 1.29459 1.19035 1.09849 1.00209 1.05913 0.91507 1.25368 1.02089 0.97952 0.99882 1.69851 1.45108 1.21550 1.26818 0.85549 0.80564 0.77281 0.79175 1.20743 1.22665 1.18366 1.22447 1.00360 1.00534 0.94978 1.22259 1.02938 0.78141 0.98872 1.48189 1.54177 1.09953 1.20014 1.17328 0.77289 0.86067 0.81737 1.90794 1.60571 1.15082 1.78676 1.24018 1.01544 1.09947 1.06279 1.20143 0.94918 0.97573 0.94001 1.18829 0.96725 1.03538 1.01255 1.17795 0.85918 0.79577 0.80238 1.43440 1.21555 1.41558 1.32286 1.90836 1.46792 1.42099 1.67845 1.26778 0.97650 1.02619 1.05505 1.83053 1.12359 1.27096 1.16654 0.91403 0.90161 0.91819 0.89701 0.92721 0.80598 0.93518 0.90943 0.93233 0.88280 0.88521 0.85267 0.74887 0.75316 0.75806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 9.02 71.98 0.65 -2.65 16 2 C 0.15 3.75 3.18 44.83 0.14 3.89 16 3 H 0.09 2.53 7.03 -2.39 -0.02 2.51 16 4 C -0.13 -3.78 4.99 30.53 0.15 -3.63 16 5 C 0.18 5.98 2.53 45.02 0.11 6.09 16 6 H 0.06 2.13 6.43 -2.39 -0.02 2.11 16 7 N -0.75 -33.01 4.92 -322.80 -1.59 -34.60 16 8 C -0.22 -11.72 10.41 84.03 0.87 -10.85 16 9 H 0.07 3.84 8.06 -2.91 -0.02 3.82 16 10 C -0.06 -3.50 5.50 84.86 0.47 -3.04 16 11 N -0.98 -61.21 13.97 21.65 0.30 -60.91 16 12 Si 0.95 45.02 27.74 68.60 1.90 46.92 16 13 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 14 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 15 H -0.26 -11.34 6.52 99.48 0.65 -10.70 16 16 C -0.14 -4.21 5.66 30.67 0.17 -4.04 16 17 C 0.10 2.20 5.46 86.36 0.47 2.68 16 18 N -0.59 -14.95 2.68 -800.44 -2.15 -17.09 16 19 C 0.59 16.69 7.52 86.46 0.65 17.34 16 20 O -0.57 -20.36 16.50 -4.29 -0.07 -20.43 16 21 C -0.30 -6.80 5.42 23.72 0.13 -6.67 16 22 C -0.03 -0.85 9.69 21.67 0.21 -0.64 16 23 C -0.19 -3.37 5.82 -21.09 -0.12 -3.49 16 24 C 0.58 11.44 8.06 86.64 0.70 12.14 16 25 N -0.82 -6.83 8.84 -175.96 -1.56 -8.38 16 26 O -0.59 -18.16 17.52 -4.07 -0.07 -18.23 16 27 C -0.19 -1.69 10.41 67.45 0.70 -0.99 16 28 S 0.34 4.03 19.81 -56.49 -1.12 2.91 16 29 H 0.07 1.44 5.74 -2.39 -0.01 1.42 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 34 H 0.36 15.78 5.66 -92.71 -0.52 15.25 16 35 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 36 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.10 1.78 7.52 -2.39 -0.02 1.76 16 39 H 0.10 1.74 3.98 -16.54 -0.07 1.67 16 40 H 0.13 3.84 7.98 -2.91 -0.02 3.81 16 41 H 0.42 0.09 7.29 -92.71 -0.68 -0.59 16 42 H 0.41 2.64 8.93 -92.71 -0.83 1.81 16 43 H 0.23 -0.33 6.99 -2.91 -0.02 -0.35 16 Total: -1.00 -82.12 359.15 -0.09 -82.21 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -1.05 Total: 21.46 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 5.31 Total: 6.15 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -4.99 Total: -120.99 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -0.14 Total: -38.66 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.90 Total: 46.92 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -1.12 Total: 2.91 kcal Total: -82.12 -0.09 -82.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044874310.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.876 kcal (2) G-P(sol) polarization free energy of solvation -82.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds