Wall clock time and date at job start Tue Mar 31 2020 20:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.70431 * 2 1 4 4 C 1.52765 * 109.51059 * 239.88851 * 2 1 3 5 5 C 1.53031 * 109.38433 * 185.70594 * 4 2 1 6 6 H 1.09009 * 109.45102 * 181.25200 * 5 4 2 7 7 N 1.46497 * 109.46085 * 301.21743 * 5 4 2 8 8 C 1.36945 * 120.00073 * 205.07242 * 7 5 4 9 9 H 1.08000 * 119.99547 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99941 * 180.02562 * 8 7 5 11 11 N 1.31615 * 119.99796 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 120.00060 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47486 * 90.00265 * 12 10 8 14 14 H 1.48503 * 109.47132 * 210.00525 * 12 10 8 15 15 H 1.48501 * 109.47268 * 330.00097 * 12 10 8 16 16 C 1.53040 * 109.53906 * 61.24218 * 5 4 2 17 17 C 1.53193 * 109.31029 * 298.63234 * 16 5 4 18 18 N 1.46919 * 109.58948 * 120.36151 * 2 1 3 19 19 C 1.34776 * 120.63110 * 353.41713 * 18 2 1 20 20 O 1.21684 * 120.00084 * 18.10933 * 19 18 2 21 21 C 1.46731 * 120.00147 * 198.11139 * 19 18 2 22 22 C 1.34879 * 125.05676 * 187.62706 * 21 19 18 23 23 C 1.38937 * 113.65516 * 180.28091 * 22 21 19 24 24 C 1.47338 * 122.96182 * 179.75994 * 23 22 21 25 25 N 1.34767 * 119.99918 * 180.02562 * 24 23 22 26 26 O 1.21618 * 119.99870 * 359.97438 * 24 23 22 27 27 C 1.36660 * 114.07467 * 359.55465 * 23 22 21 28 28 S 1.70595 * 110.53073 * 0.43369 * 27 23 22 29 29 H 1.09003 * 109.46974 * 299.34477 * 1 2 3 30 30 H 1.08999 * 109.47395 * 59.34588 * 1 2 3 31 31 H 1.09004 * 109.47203 * 179.34395 * 1 2 3 32 32 H 1.08997 * 109.56728 * 65.66439 * 4 2 1 33 33 H 1.09004 * 109.38243 * 305.63316 * 4 2 1 34 34 H 0.96999 * 119.99985 * 25.06933 * 7 5 4 35 35 H 0.96996 * 119.99938 * 179.97438 * 11 10 8 36 36 H 1.09005 * 109.49659 * 178.68178 * 16 5 4 37 37 H 1.08997 * 109.49936 * 58.58302 * 16 5 4 38 38 H 1.09005 * 109.58283 * 294.84764 * 17 16 5 39 39 H 1.08996 * 109.70463 * 174.49932 * 17 16 5 40 40 H 1.08007 * 123.17257 * 0.02562 * 22 21 19 41 41 H 0.96999 * 120.00311 * 359.97438 * 25 24 23 42 42 H 0.97001 * 119.99746 * 179.97438 * 25 24 23 43 43 H 1.08005 * 124.73199 * 180.19348 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0402 -0.7224 -1.2456 5 6 3.5637 -0.8461 -1.1728 6 1 3.9311 -1.3416 -2.0715 7 7 4.1577 0.4895 -1.0745 8 6 5.4417 0.7010 -1.5010 9 1 6.0166 -0.1170 -1.9095 10 6 6.0046 1.9663 -1.4074 11 7 7.2385 2.1696 -1.8178 12 14 5.0105 3.3809 -0.7003 13 1 5.2224 3.4496 0.7679 14 1 5.4497 4.6550 -1.3240 15 1 3.5690 3.1627 -0.9827 16 6 3.9522 -1.6687 0.0579 17 6 3.4644 -0.9521 1.3209 18 7 2.0226 -0.6996 1.1943 19 6 1.1674 -1.1071 2.1530 20 8 -0.0206 -1.2033 1.9078 21 6 1.6689 -1.4349 3.4925 22 6 0.9358 -1.9880 4.4803 23 6 1.6479 -2.1920 5.6557 24 6 1.0463 -2.7789 6.8659 25 7 1.7931 -2.9496 7.9747 26 8 -0.1243 -3.1085 6.8644 27 6 2.9567 -1.8043 5.5891 28 16 3.3133 -1.1641 4.0485 29 1 -0.3633 0.5036 0.8958 30 1 -0.3634 0.5239 -0.8840 31 1 -0.3634 -1.0276 -0.0118 32 1 1.7632 -0.1564 -2.1350 33 1 1.5963 -1.7168 -1.2944 34 1 3.6414 1.2241 -0.7073 35 1 7.6318 3.0539 -1.7528 36 1 5.0363 -1.7762 0.0962 37 1 3.4904 -2.6541 -0.0026 38 1 3.9929 -0.0051 1.4309 39 1 3.6507 -1.5778 2.1937 40 1 -0.1076 -2.2442 4.3694 41 1 2.7266 -2.6863 7.9760 42 1 1.3969 -3.3356 8.7715 43 1 3.6652 -1.8876 6.3999 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044874311.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:34 Heat of formation + Delta-G solvation = -30.340040 kcal Electronic energy + Delta-G solvation = -27385.394993 eV Core-core repulsion = 23557.233914 eV Total energy + Delta-G solvation = -3828.161079 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.76245 -40.88017 -39.13619 -37.82882 -36.00931 -34.86806 -34.22630 -33.76905 -31.54890 -30.70817 -28.51405 -26.66109 -25.79248 -25.08051 -24.66648 -22.79781 -21.44595 -20.36438 -20.11180 -19.77184 -18.98738 -18.12599 -17.89276 -17.15048 -16.88878 -16.62606 -16.51241 -16.01271 -15.80087 -15.78578 -15.30926 -15.06277 -14.79695 -14.56195 -14.32285 -13.99857 -13.90641 -13.80616 -13.58601 -13.41925 -13.12151 -12.96453 -12.79481 -12.59034 -12.32430 -12.13212 -12.02320 -11.86400 -11.70410 -11.43857 -11.16063 -10.90896 -10.76613 -10.44126 -10.11298 -9.62825 -9.59188 -9.24125 -7.96027 -5.28413 -0.69805 0.29922 0.53685 0.71461 1.40286 1.41982 1.49192 1.78715 1.86641 2.31731 2.51984 2.55780 3.35764 3.36824 3.59849 3.78495 3.87408 3.92660 3.97649 4.03481 4.12719 4.18261 4.24784 4.39401 4.52866 4.57399 4.61416 4.78059 4.89084 4.92036 4.98319 4.99479 5.07082 5.19374 5.21627 5.25648 5.38322 5.64153 5.83884 5.86330 6.26912 6.29958 6.38147 6.96716 7.13997 7.26059 7.89773 8.08352 9.25525 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.015884 B = 0.003478 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.308238 B = 8048.563383 C = 8923.181705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.146 3.854 3 H 0.065 0.935 4 C -0.128 4.128 5 C 0.173 3.827 6 H 0.055 0.945 7 N -0.746 5.746 8 C -0.216 4.216 9 H 0.064 0.936 10 C -0.058 4.058 11 N -0.983 5.983 12 Si 0.937 3.063 13 H -0.275 1.275 14 H -0.303 1.303 15 H -0.257 1.257 16 C -0.138 4.138 17 C 0.110 3.890 18 N -0.605 5.605 19 C 0.588 3.412 20 O -0.549 6.549 21 C -0.303 4.303 22 C -0.019 4.019 23 C -0.189 4.189 24 C 0.581 3.419 25 N -0.825 5.825 26 O -0.592 6.592 27 C -0.193 4.193 28 S 0.319 5.681 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.363 0.637 35 H 0.255 0.745 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.137 0.863 41 H 0.418 0.582 42 H 0.415 0.585 43 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.283 -9.368 17.790 21.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.043 3.957 3 H 0.083 0.917 4 C -0.167 4.167 5 C 0.065 3.935 6 H 0.073 0.927 7 N -0.390 5.390 8 C -0.347 4.347 9 H 0.082 0.918 10 C -0.250 4.250 11 N -0.634 5.634 12 Si 0.765 3.235 13 H -0.201 1.201 14 H -0.230 1.230 15 H -0.182 1.182 16 C -0.179 4.179 17 C -0.013 4.013 18 N -0.338 5.338 19 C 0.377 3.623 20 O -0.429 6.429 21 C -0.423 4.423 22 C -0.051 4.051 23 C -0.206 4.206 24 C 0.366 3.634 25 N -0.389 5.389 26 O -0.474 6.474 27 C -0.333 4.333 28 S 0.589 5.411 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.197 0.803 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.111 0.889 40 H 0.155 0.845 41 H 0.250 0.750 42 H 0.247 0.753 43 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -7.120 -8.997 16.747 20.300 hybrid contribution -1.170 0.517 1.145 1.716 sum -8.289 -8.481 17.892 21.465 Atomic orbital electron populations 1.22087 0.92287 1.03216 1.00988 1.21176 0.95595 0.94849 0.84050 0.91741 1.22131 0.95361 1.01935 0.97226 1.20375 0.91549 0.85346 0.96266 0.92702 1.42864 1.12772 1.07187 1.76209 1.19013 0.89179 0.94895 1.31639 0.91850 1.25318 0.97025 0.99791 1.02835 1.69855 1.15556 1.22497 1.55535 0.85683 0.79450 0.79678 0.78644 1.20050 1.23007 1.18161 1.22340 1.01750 0.98820 0.94960 1.21985 0.79032 1.01458 0.98867 1.47985 1.07669 1.57734 1.20431 1.17257 0.85430 0.76521 0.83072 1.90836 1.17292 1.53286 1.81490 1.24251 1.01462 1.17113 0.99474 1.20235 1.00802 0.93548 0.90493 1.18886 0.94584 1.11334 0.95780 1.17786 0.85109 0.76827 0.83722 1.43448 1.15768 1.65667 1.14037 1.90831 1.18507 1.53227 1.84802 1.27131 0.99028 1.00769 1.06332 1.83801 1.04366 1.53978 0.99002 0.93175 0.91809 0.91348 0.90052 0.89793 0.80329 0.93579 0.90681 0.90454 0.90778 0.88945 0.84515 0.74992 0.75287 0.76372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 7.61 71.98 0.55 -3.05 16 2 C 0.15 4.21 3.18 44.83 0.14 4.36 16 3 H 0.06 2.00 6.64 -2.39 -0.02 1.99 16 4 C -0.13 -3.57 5.05 30.53 0.15 -3.41 16 5 C 0.17 5.66 3.10 45.02 0.14 5.80 16 6 H 0.05 1.90 8.08 -2.38 -0.02 1.88 16 7 N -0.75 -30.60 4.11 -322.82 -1.33 -31.93 16 8 C -0.22 -11.12 10.41 84.03 0.87 -10.25 16 9 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 10 C -0.06 -3.21 5.50 84.86 0.47 -2.74 16 11 N -0.98 -59.88 13.97 21.65 0.30 -59.57 16 12 Si 0.94 42.74 27.73 68.60 1.90 44.64 16 13 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 14 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 15 H -0.26 -10.67 6.52 99.48 0.65 -10.02 16 16 C -0.14 -3.87 5.78 30.67 0.18 -3.69 16 17 C 0.11 2.90 4.93 86.36 0.43 3.32 16 18 N -0.61 -17.01 2.98 -800.46 -2.38 -19.40 16 19 C 0.59 17.42 7.35 86.46 0.64 18.05 16 20 O -0.55 -18.96 12.50 -4.30 -0.05 -19.02 16 21 C -0.30 -7.47 6.07 23.72 0.14 -7.32 16 22 C -0.02 -0.47 9.48 21.67 0.21 -0.26 16 23 C -0.19 -3.64 5.82 -21.09 -0.12 -3.76 16 24 C 0.58 11.70 8.06 86.64 0.70 12.40 16 25 N -0.82 -7.42 8.84 -175.95 -1.56 -8.98 16 26 O -0.59 -17.95 17.52 -4.09 -0.07 -18.02 16 27 C -0.19 -2.29 10.41 67.45 0.70 -1.58 16 28 S 0.32 5.22 18.55 -56.49 -1.05 4.17 16 29 H 0.05 1.53 6.85 -2.39 -0.02 1.51 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 2.05 6.69 -2.39 -0.02 2.04 16 32 H 0.08 2.23 8.14 -2.39 -0.02 2.22 16 33 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.36 14.65 3.93 -92.71 -0.36 14.29 16 35 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 36 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 37 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.07 2.17 7.74 -2.38 -0.02 2.15 16 39 H 0.09 1.99 3.90 -21.47 -0.08 1.90 16 40 H 0.14 4.05 7.96 -2.91 -0.02 4.03 16 41 H 0.42 0.65 7.29 -92.71 -0.68 -0.03 16 42 H 0.41 2.79 8.93 -92.71 -0.83 1.96 16 43 H 0.22 0.38 6.99 -2.91 -0.02 0.36 16 Total: -1.00 -75.51 351.75 0.05 -75.46 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: -0.91 Total: 24.78 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 5.19 Total: 7.86 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -4.96 Total: -119.88 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -0.13 Total: -37.04 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.90 Total: 44.64 kcal Atomic # 16 Polarization: 5.22 SS G_CDS: -1.05 Total: 4.17 kcal Total: -75.51 0.05 -75.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044874311.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.120 kcal (2) G-P(sol) polarization free energy of solvation -75.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds