Wall clock time and date at job start Tue Mar 31 2020 20:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09009 * 109.69937 * 2 1 4 4 C 1.53195 * 109.58746 * 120.35344 * 2 1 3 5 5 C 1.53043 * 109.31076 * 174.42374 * 4 2 1 6 6 H 1.09000 * 109.45537 * 58.64399 * 5 4 2 7 7 N 1.46498 * 109.45728 * 178.61839 * 5 4 2 8 8 C 1.36942 * 119.99788 * 205.00231 * 7 5 4 9 9 H 1.07998 * 119.99698 * 359.97438 * 8 7 5 10 10 C 1.38806 * 119.99884 * 180.02562 * 8 7 5 11 11 N 1.31617 * 120.00228 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99784 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47467 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47267 * 119.99837 * 12 10 8 15 15 H 1.48498 * 109.47284 * 239.99701 * 12 10 8 16 16 C 1.53038 * 109.53712 * 298.64011 * 5 4 2 17 17 C 1.52753 * 109.38822 * 61.23937 * 16 5 4 18 18 N 1.46921 * 109.58625 * 239.64656 * 2 1 3 19 19 C 1.34775 * 120.63363 * 6.58082 * 18 2 1 20 20 O 1.21684 * 119.99526 * 4.37739 * 19 18 2 21 21 C 1.46731 * 120.00273 * 184.37470 * 19 18 2 22 22 C 1.34872 * 125.05549 * 133.84979 * 21 19 18 23 23 C 1.38943 * 113.65593 * 180.02562 * 22 21 19 24 24 C 1.47330 * 122.96490 * 180.02562 * 23 22 21 25 25 N 1.34768 * 120.00195 * 179.97438 * 24 23 22 26 26 O 1.21627 * 120.00097 * 359.97438 * 24 23 22 27 27 C 1.36658 * 114.07331 * 0.02562 * 23 22 21 28 28 S 1.70600 * 110.53302 * 0.26306 * 27 23 22 29 29 H 1.08997 * 109.46785 * 173.08036 * 1 2 3 30 30 H 1.08998 * 109.46741 * 293.07867 * 1 2 3 31 31 H 1.08997 * 109.47153 * 53.08353 * 1 2 3 32 32 H 1.08999 * 109.49812 * 294.37730 * 4 2 1 33 33 H 1.08999 * 109.49392 * 54.44360 * 4 2 1 34 34 H 0.96993 * 120.00101 * 24.99670 * 7 5 4 35 35 H 0.96999 * 120.00294 * 179.97438 * 11 10 8 36 36 H 1.09005 * 109.49706 * 181.31869 * 16 5 4 37 37 H 1.09004 * 109.49732 * 301.37798 * 16 5 4 38 38 H 1.09002 * 109.51082 * 185.70456 * 17 16 5 39 39 H 1.09005 * 109.43446 * 65.42445 * 17 16 5 40 40 H 1.08005 * 123.17502 * 0.02562 * 22 21 19 41 41 H 0.96997 * 120.00060 * 0.02562 * 25 24 23 42 42 H 0.97003 * 120.00055 * 180.02562 * 25 24 23 43 43 H 1.08005 * 124.73227 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0436 -0.7293 1.2455 5 6 3.5676 -0.8479 1.1701 6 1 4.0061 0.1475 1.0991 7 7 4.0653 -1.5157 2.3753 8 6 5.3498 -1.2986 2.7974 9 1 5.9960 -0.6354 2.2416 10 6 5.8216 -1.9317 3.9391 11 7 5.0342 -2.7403 4.6162 12 14 7.5740 -1.6361 4.5144 13 1 8.2475 -0.6930 3.5859 14 1 7.5551 -1.0567 5.8816 15 1 8.3129 -2.9241 4.5329 16 6 3.9570 -1.6655 -0.0635 17 6 3.4645 -0.9518 -1.3211 18 7 2.0226 -0.6995 -1.1945 19 6 1.1674 -1.1069 -2.1532 20 8 -0.0141 -0.8270 -2.0734 21 6 1.6611 -1.8879 -3.2931 22 6 1.0805 -3.0054 -3.7760 23 6 1.7483 -3.5552 -4.8633 24 6 1.2922 -4.7760 -5.5505 25 7 1.9862 -5.2575 -6.6007 26 8 0.2893 -5.3494 -5.1701 27 6 2.8656 -2.8638 -5.2391 28 16 3.1014 -1.5116 -4.2261 29 1 -0.3633 -1.0202 -0.1238 30 1 -0.3633 0.4028 0.9454 31 1 -0.3633 0.6172 -0.8216 32 1 1.7661 -0.1668 2.1369 33 1 1.6027 -1.7251 1.2916 34 1 3.4850 -2.1115 2.8744 35 1 5.3640 -3.1831 5.4138 36 1 5.0413 -1.7694 -0.1037 37 1 3.4989 -2.6529 -0.0050 38 1 3.6505 -1.5796 -2.1925 39 1 3.9929 -0.0047 -1.4310 40 1 0.1814 -3.4326 -3.3572 41 1 2.7862 -4.8005 -6.9039 42 1 1.6856 -6.0610 -7.0534 43 1 3.5115 -3.1377 -6.0603 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044874313.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:40 Heat of formation + Delta-G solvation = -11.982805 kcal Electronic energy + Delta-G solvation = -26859.383475 eV Core-core repulsion = 23032.018425 eV Total energy + Delta-G solvation = -3827.365050 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.61564 -40.00340 -37.70799 -36.90363 -34.57153 -34.13077 -32.95795 -31.98708 -30.09144 -29.20892 -27.08263 -25.85463 -24.48410 -23.67003 -23.03991 -21.43860 -20.33887 -19.68504 -19.33626 -18.27899 -17.39291 -17.19185 -17.06686 -16.08478 -15.85583 -15.38050 -15.00962 -14.90134 -14.78662 -14.08441 -13.93251 -13.72394 -13.62062 -13.29180 -13.04445 -13.02747 -12.87232 -12.64892 -12.11203 -12.09299 -11.69960 -11.57452 -11.37459 -10.95726 -10.88057 -10.82101 -10.51635 -10.37208 -10.25053 -10.08615 -9.90516 -9.76956 -9.38263 -9.13573 -8.99714 -8.74657 -8.52023 -7.01849 -5.81144 -3.10751 0.11513 0.96440 1.38301 1.52566 2.68634 2.96095 3.15487 3.21166 3.39457 3.44685 3.47475 4.29787 4.50506 4.53612 4.66568 4.86150 4.92978 5.10897 5.21574 5.28063 5.41833 5.43521 5.49120 5.58482 5.68190 5.75502 5.85624 5.87163 5.97490 6.09534 6.21778 6.31063 6.39217 6.39834 6.43211 6.49801 6.69766 6.84026 6.92617 6.99189 7.38264 7.64929 7.89820 8.09193 8.36779 9.48194 10.05358 10.39993 11.41339 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013563 B = 0.002959 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.906275 B = 9461.246432 C =10412.552211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.149 3.851 3 H 0.075 0.925 4 C -0.136 4.136 5 C 0.179 3.821 6 H 0.049 0.951 7 N -0.723 5.723 8 C -0.240 4.240 9 H 0.071 0.929 10 C -0.013 4.013 11 N -0.931 5.931 12 Si 0.906 3.094 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.292 1.292 16 C -0.150 4.150 17 C 0.096 3.904 18 N -0.594 5.594 19 C 0.587 3.413 20 O -0.520 6.520 21 C -0.258 4.258 22 C -0.026 4.026 23 C -0.159 4.159 24 C 0.583 3.417 25 N -0.851 5.851 26 O -0.535 6.535 27 C -0.222 4.222 28 S 0.268 5.732 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.160 0.840 41 H 0.400 0.600 42 H 0.406 0.594 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.136 2.322 -23.661 23.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.047 3.953 3 H 0.093 0.907 4 C -0.175 4.175 5 C 0.069 3.931 6 H 0.067 0.933 7 N -0.363 5.363 8 C -0.372 4.372 9 H 0.089 0.911 10 C -0.209 4.209 11 N -0.579 5.579 12 Si 0.737 3.263 13 H -0.205 1.205 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.191 4.191 17 C -0.028 4.028 18 N -0.327 5.327 19 C 0.373 3.627 20 O -0.398 6.398 21 C -0.378 4.378 22 C -0.056 4.056 23 C -0.177 4.177 24 C 0.367 3.633 25 N -0.415 5.415 26 O -0.412 6.412 27 C -0.362 4.362 28 S 0.537 5.463 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.177 0.823 41 H 0.228 0.772 42 H 0.237 0.763 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -3.141 3.471 -23.092 23.562 hybrid contribution 0.354 -1.611 -0.032 1.650 sum -2.787 1.860 -23.124 23.366 Atomic orbital electron populations 1.22207 0.92715 1.03769 1.00807 1.21372 0.95543 0.95108 0.83320 0.90720 1.22320 0.97596 1.01117 0.96470 1.20160 0.90901 0.94975 0.87074 0.93335 1.42435 1.12951 1.54366 1.26593 1.19263 0.89058 1.22280 1.06549 0.91097 1.24756 0.98154 0.99794 0.98188 1.69671 1.35296 1.33454 1.19471 0.86143 0.84492 0.77278 0.78403 1.20544 1.21867 1.21894 1.22601 1.01870 1.00192 0.94442 1.22129 0.79553 1.00955 1.00156 1.48135 1.07632 1.56768 1.20129 1.17024 0.85716 0.78906 0.81033 1.90895 1.16087 1.56005 1.76831 1.24321 1.03178 1.04426 1.05901 1.20188 0.99651 0.92688 0.93119 1.18978 0.98306 0.99516 1.00898 1.17639 0.82765 0.83315 0.79567 1.43658 1.31148 1.32214 1.34439 1.90867 1.25322 1.59832 1.65181 1.26209 1.01674 1.02418 1.05862 1.83297 1.20623 1.23512 1.18888 0.91484 0.93405 0.90924 0.90343 0.91647 0.78208 0.93505 0.90361 0.92037 0.90532 0.90831 0.82290 0.77174 0.76274 0.80822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 7.61 37.16 0.28 -1.66 16 2 C 0.15 2.10 3.49 -67.60 -0.24 1.86 16 3 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 4 C -0.14 -2.21 4.84 -26.61 -0.13 -2.33 16 5 C 0.18 3.31 2.73 -67.89 -0.19 3.12 16 6 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 7 N -0.72 -17.36 5.12 -53.39 -0.27 -17.63 16 8 C -0.24 -6.39 9.93 -15.06 -0.15 -6.54 16 9 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 10 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 11 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 12 Si 0.91 21.78 29.55 -169.99 -5.02 16.75 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 16 C -0.15 -2.42 5.64 -26.84 -0.15 -2.57 16 17 C 0.10 1.20 5.86 -3.93 -0.02 1.18 16 18 N -0.59 -8.15 2.98 -166.99 -0.50 -8.65 16 19 C 0.59 8.46 7.34 -12.83 -0.09 8.37 16 20 O -0.52 -8.70 12.61 5.20 0.07 -8.63 16 21 C -0.26 -3.13 5.41 -37.35 -0.20 -3.33 16 22 C -0.03 -0.32 9.70 -40.51 -0.39 -0.72 16 23 C -0.16 -1.61 5.82 -106.51 -0.62 -2.23 16 24 C 0.58 6.21 8.06 -12.57 -0.10 6.11 16 25 N -0.85 -4.91 8.84 30.41 0.27 -4.64 16 26 O -0.53 -8.07 17.53 5.25 0.09 -7.98 16 27 C -0.22 -1.55 10.41 30.16 0.31 -1.24 16 28 S 0.27 2.17 19.85 -107.50 -2.13 0.03 16 29 H 0.07 1.06 6.80 -51.93 -0.35 0.70 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.06 6.68 -51.93 -0.35 0.71 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.38 10.00 7.80 -40.82 -0.32 9.68 16 35 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.08 0.84 3.99 -30.01 -0.12 0.72 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.16 2.17 7.98 -52.48 -0.42 1.75 16 41 H 0.40 1.03 7.29 -40.82 -0.30 0.73 16 42 H 0.41 1.86 8.93 -40.82 -0.36 1.50 16 43 H 0.17 0.52 6.99 -52.48 -0.37 0.15 16 LS Contribution 360.86 15.07 5.44 5.44 Total: -1.00 -34.36 360.86 -8.63 -43.00 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -5.51 Total: 9.64 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -1.78 Total: -0.42 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: 0.22 Total: -57.83 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.16 Total: -16.61 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.13 Total: 0.03 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.36 -8.63 -43.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044874313.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.015 kcal (2) G-P(sol) polarization free energy of solvation -34.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds