Wall clock time and date at job start Tue Mar 31 2020 20:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.51886 * 2 1 4 4 C 1.53276 * 109.51064 * 239.89574 * 2 1 3 5 5 N 1.47172 * 108.56106 * 187.01042 * 4 2 1 6 6 C 1.34780 * 121.08259 * 231.26749 * 5 4 2 7 7 O 1.21641 * 119.99656 * 358.06304 * 6 5 4 8 8 C 1.47260 * 120.00301 * 178.05888 * 6 5 4 9 9 C 1.35205 * 123.14153 * 187.56161 * 8 6 5 10 10 S 1.70946 * 108.82844 * 179.97438 * 9 8 6 11 11 C 1.70777 * 91.12633 * 0.02562 * 10 9 8 12 12 N 1.28653 * 110.55828 * 359.76528 * 11 10 9 13 13 C 1.47332 * 117.83938 * 51.25252 * 5 4 2 14 14 C 1.52362 * 108.42015 * 310.83389 * 13 5 4 15 15 C 1.54358 * 110.41372 * 173.55799 * 14 13 5 16 16 C 1.54469 * 102.87323 * 152.38334 * 15 14 13 17 17 N 1.47081 * 107.29555 * 338.50169 * 16 15 14 18 18 C 1.36933 * 125.63078 * 178.96653 * 17 16 15 19 19 H 1.08007 * 120.00191 * 175.00601 * 18 17 16 20 20 C 1.38816 * 120.00120 * 355.00641 * 18 17 16 21 21 N 1.31623 * 119.99659 * 5.23742 * 20 18 17 22 22 Si 1.86798 * 120.00103 * 185.23850 * 20 18 17 23 23 H 1.48488 * 109.47444 * 95.00025 * 22 20 18 24 24 H 1.48503 * 109.47032 * 214.99963 * 22 20 18 25 25 H 1.48503 * 109.46850 * 334.99564 * 22 20 18 26 26 C 1.47571 * 108.73892 * 359.00759 * 17 16 15 27 27 O 1.41878 * 111.46504 * 50.01697 * 14 13 5 28 28 H 1.08995 * 109.47694 * 180.10059 * 1 2 3 29 29 H 1.09001 * 109.46695 * 300.10603 * 1 2 3 30 30 H 1.08999 * 109.46475 * 60.09749 * 1 2 3 31 31 H 1.08997 * 109.62060 * 67.28958 * 4 2 1 32 32 H 1.09003 * 109.77951 * 306.82222 * 4 2 1 33 33 H 1.07999 * 125.59140 * 359.96718 * 9 8 6 34 34 H 1.08003 * 124.71927 * 180.02562 * 11 10 9 35 35 H 1.08999 * 109.67235 * 191.09581 * 13 5 4 36 36 H 1.08996 * 109.67383 * 70.56350 * 13 5 4 37 37 H 1.09000 * 110.73432 * 270.73107 * 15 14 13 38 38 H 1.09000 * 110.73293 * 34.04399 * 15 14 13 39 39 H 1.09004 * 109.87737 * 97.92740 * 16 15 14 40 40 H 1.08995 * 109.87699 * 218.92517 * 16 15 14 41 41 H 0.97002 * 119.99610 * 180.02562 * 21 20 18 42 42 H 1.09001 * 110.37056 * 264.48701 * 26 17 16 43 43 H 1.09003 * 110.37968 * 142.14413 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0419 -0.7247 -1.2499 5 7 3.5036 -0.8615 -1.1464 6 6 4.3119 -0.4722 -2.1522 7 8 3.8341 -0.0316 -3.1805 8 6 5.7732 -0.5803 -2.0065 9 6 6.6454 -0.0751 -2.9077 10 16 8.2374 -0.4049 -2.3796 11 6 7.6472 -1.1984 -0.9873 12 7 6.3609 -1.1826 -0.9694 13 6 4.0547 -1.4375 0.0926 14 6 3.4226 -0.7209 1.2794 15 6 3.8448 -1.3947 2.6024 16 6 3.7659 -0.2350 3.6197 17 7 3.8532 1.0207 2.8590 18 6 3.8004 2.2812 3.3913 19 1 3.9543 3.1421 2.7575 20 6 3.5492 2.4527 4.7458 21 7 3.4641 1.4044 5.5372 22 14 3.3319 4.1712 5.4452 23 1 1.8860 4.5055 5.4966 24 1 3.9011 4.2234 6.8158 25 1 4.0360 5.1507 4.5791 26 6 4.0060 0.6980 1.4271 27 8 2.0090 -0.6770 1.1665 28 1 -0.3634 -1.0276 0.0018 29 1 -0.3633 0.5155 0.8891 30 1 -0.3632 0.5123 -0.8909 31 1 1.7905 -0.1448 -2.1379 32 1 1.5857 -1.7124 -1.3164 33 1 6.3798 0.4505 -3.8130 34 1 8.2676 -1.6470 -0.2255 35 1 5.1356 -1.2982 0.1130 36 1 3.8203 -2.5009 0.1389 37 1 3.1493 -2.1903 2.8694 38 1 4.8628 -1.7780 2.5325 39 1 2.8188 -0.2776 4.1575 40 1 4.5951 -0.3028 4.3239 41 1 3.2882 1.5243 6.4835 42 1 5.0592 0.7065 1.1465 43 1 3.4440 1.4048 0.8166 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071142954.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:35 Heat of formation + Delta-G solvation = 26.698663 kcal Electronic energy + Delta-G solvation = -28551.978965 eV Core-core repulsion = 24726.291270 eV Total energy + Delta-G solvation = -3825.687695 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.03119 -39.59753 -38.31084 -36.13608 -34.60776 -33.04251 -31.32628 -30.85693 -29.31563 -28.15034 -27.47188 -25.69181 -25.23985 -23.71274 -22.41232 -21.45887 -20.09551 -19.64315 -19.12114 -18.46846 -16.95849 -16.83835 -16.33062 -15.98969 -15.57714 -15.45720 -14.70575 -14.60090 -14.33037 -13.95446 -13.78340 -13.64146 -13.46088 -13.33391 -12.91883 -12.44895 -12.26471 -12.10918 -11.98386 -11.87898 -11.66953 -11.43642 -10.95754 -10.84845 -10.78495 -10.45707 -10.26828 -10.16226 -10.06638 -10.01966 -9.96828 -9.64830 -9.45931 -9.26927 -9.15532 -8.52271 -8.23409 -6.75280 -5.66777 -2.98412 0.30180 0.99780 1.33846 1.77807 2.96048 3.25867 3.42621 3.47826 3.49502 3.83500 4.05285 4.53245 4.61639 4.86836 4.93355 5.04029 5.17776 5.21137 5.26912 5.39852 5.42950 5.54908 5.61813 5.66363 5.76082 5.79684 5.83293 5.98039 6.17597 6.20986 6.27946 6.36660 6.49804 6.55684 6.64406 6.68329 6.72165 7.11360 7.40767 7.57885 7.71735 7.83451 7.89595 8.08055 8.31610 9.27255 9.87317 10.54484 11.45208 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.011416 B = 0.004306 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.006887 B = 6501.007520 C = 7748.522614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.073 3.927 3 H 0.067 0.933 4 C 0.083 3.917 5 N -0.590 5.590 6 C 0.594 3.406 7 O -0.544 6.544 8 C 0.013 3.987 9 C -0.223 4.223 10 S 0.215 5.785 11 C 0.001 3.999 12 N -0.432 5.432 13 C 0.049 3.951 14 C 0.093 3.907 15 C -0.128 4.128 16 C 0.182 3.818 17 N -0.598 5.598 18 C -0.226 4.226 19 H 0.074 0.926 20 C -0.006 4.006 21 N -0.919 5.919 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.123 3.877 27 O -0.351 6.351 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.190 0.810 34 H 0.209 0.791 35 H 0.164 0.836 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.040 0.960 41 H 0.251 0.749 42 H 0.021 0.979 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.042 -8.386 -16.074 19.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.014 3.986 3 H 0.084 0.916 4 C -0.040 4.040 5 N -0.320 5.320 6 C 0.380 3.620 7 O -0.423 6.423 8 C -0.121 4.121 9 C -0.365 4.365 10 S 0.470 5.530 11 C -0.297 4.297 12 N -0.147 5.147 13 C -0.074 4.074 14 C 0.051 3.949 15 C -0.166 4.166 16 C 0.058 3.942 17 N -0.324 5.324 18 C -0.354 4.354 19 H 0.092 0.908 20 C -0.202 4.202 21 N -0.566 5.566 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.208 1.208 26 C -0.004 4.004 27 O -0.269 6.269 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.093 0.907 33 H 0.207 0.793 34 H 0.225 0.775 35 H 0.179 0.821 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.038 0.962 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 7.350 -8.192 -16.173 19.563 hybrid contribution -1.012 1.042 0.333 1.490 sum 6.338 -7.151 -15.840 18.498 Atomic orbital electron populations 1.21668 0.92518 1.02727 1.02750 1.22409 0.95252 0.96195 0.84726 0.91559 1.22440 0.79425 1.01893 1.00227 1.47999 1.06545 1.60535 1.16941 1.17079 0.83961 0.77788 0.83163 1.90785 1.75593 1.47416 1.28457 1.20457 0.96015 1.03271 0.92354 1.26581 0.97035 1.06758 1.06171 1.82921 1.05900 1.47702 1.16490 1.28771 0.94332 1.03673 1.02961 1.66701 1.08230 1.18001 1.21766 1.23699 1.05387 0.96823 0.81513 1.22344 0.81175 0.96766 0.94582 1.22803 1.00029 0.99837 0.93965 1.21154 1.01133 0.81407 0.90544 1.44402 1.86043 1.02454 0.99500 1.19016 1.41613 0.82660 0.92151 0.90794 1.24783 1.02024 0.97264 0.96131 1.69972 1.55469 1.27163 1.04025 0.86150 0.77831 0.83768 0.78343 1.21654 1.21746 1.20756 1.21896 0.96707 0.93302 0.88446 1.87818 1.20354 1.76584 1.42179 0.91925 0.91065 0.91284 0.88514 0.90727 0.79320 0.77491 0.82080 0.91547 0.91051 0.90929 0.92984 0.94222 0.93822 0.96173 0.94568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.57 37.16 0.36 -1.53 16 2 C 0.07 1.21 3.20 -26.59 -0.08 1.12 16 3 H 0.07 1.23 6.25 -51.93 -0.32 0.91 16 4 C 0.08 1.24 5.90 -3.53 -0.02 1.21 16 5 N -0.59 -9.45 2.96 -174.02 -0.51 -9.97 16 6 C 0.59 9.64 7.69 -12.59 -0.10 9.54 16 7 O -0.54 -9.73 16.21 5.24 0.08 -9.64 16 8 C 0.01 0.18 6.55 -84.53 -0.55 -0.37 16 9 C -0.22 -2.39 10.62 29.65 0.31 -2.08 16 10 S 0.21 1.56 22.97 -107.50 -2.47 -0.91 16 11 C 0.00 0.01 12.17 51.43 0.63 0.63 16 12 N -0.43 -5.43 6.66 -12.36 -0.08 -5.51 16 13 C 0.05 0.78 5.03 -3.91 -0.02 0.76 16 14 C 0.09 1.77 0.83 -89.65 -0.07 1.69 16 15 C -0.13 -2.48 6.12 -25.25 -0.15 -2.63 16 16 C 0.18 4.56 5.39 -2.95 -0.02 4.54 16 17 N -0.60 -15.83 3.40 -170.31 -0.58 -16.41 16 18 C -0.23 -6.51 10.27 -15.06 -0.15 -6.66 16 19 H 0.07 2.08 7.83 -52.48 -0.41 1.67 16 20 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 21 N -0.92 -27.43 10.34 55.49 0.57 -26.85 16 22 Si 0.91 22.58 29.56 -169.99 -5.02 17.55 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 C 0.12 2.74 6.18 -2.87 -0.02 2.72 16 27 O -0.35 -6.90 9.92 -35.22 -0.35 -7.25 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.10 1.41 7.09 -51.93 -0.37 1.04 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.19 1.82 8.04 -52.49 -0.42 1.40 16 34 H 0.21 1.12 8.06 -52.48 -0.42 0.70 16 35 H 0.16 2.53 3.54 -84.95 -0.30 2.23 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.07 1.24 8.00 -51.93 -0.42 0.83 16 39 H 0.05 1.47 7.25 -51.93 -0.38 1.09 16 40 H 0.04 1.07 7.64 -51.93 -0.40 0.67 16 41 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.02 0.46 7.82 -51.93 -0.41 0.05 16 43 H 0.04 0.84 6.10 -51.93 -0.32 0.52 16 LS Contribution 353.12 15.07 5.32 5.32 Total: -1.00 -34.76 353.12 -8.86 -43.62 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -5.83 Total: 1.35 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 0.01 Total: 8.70 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.60 Total: -58.74 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.26 Total: -16.89 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.47 Total: -0.91 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.76 -8.86 -43.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071142954.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.321 kcal (2) G-P(sol) polarization free energy of solvation -34.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds