Wall clock time and date at job start Tue Mar 31 2020 20:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.50792 * 2 1 4 4 C 1.53286 * 109.51392 * 120.09481 * 2 1 3 5 5 N 1.47165 * 108.49100 * 172.91381 * 4 2 1 6 6 C 1.34778 * 121.06122 * 128.77193 * 5 4 2 7 7 O 1.21638 * 119.99779 * 352.60835 * 6 5 4 8 8 C 1.47264 * 120.00132 * 172.61109 * 6 5 4 9 9 C 1.35212 * 123.13901 * 172.08760 * 8 6 5 10 10 S 1.70944 * 108.82530 * 179.97438 * 9 8 6 11 11 C 1.70775 * 91.12958 * 0.02562 * 10 9 8 12 12 N 1.28644 * 110.55563 * 359.76437 * 11 10 9 13 13 C 1.47288 * 117.88247 * 308.79237 * 5 4 2 14 14 C 1.52513 * 108.46402 * 49.34686 * 13 5 4 15 15 C 1.54525 * 110.04302 * 187.27154 * 14 13 5 16 16 C 1.55019 * 101.53011 * 206.94066 * 15 14 13 17 17 N 1.47481 * 104.90384 * 36.36746 * 16 15 14 18 18 C 1.36935 * 125.66485 * 155.97766 * 17 16 15 19 19 H 1.08001 * 120.00202 * 180.02562 * 18 17 16 20 20 C 1.38811 * 119.99751 * 0.03049 * 18 17 16 21 21 N 1.31620 * 120.00529 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99754 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47028 * 90.00148 * 22 20 18 24 24 H 1.48501 * 109.46925 * 209.99933 * 22 20 18 25 25 H 1.48497 * 109.47241 * 329.99675 * 22 20 18 26 26 C 1.47184 * 108.66925 * 335.98348 * 17 16 15 27 27 O 1.42064 * 111.13777 * 309.79061 * 14 13 5 28 28 H 1.08995 * 109.47279 * 299.90310 * 1 2 3 29 29 H 1.08999 * 109.46324 * 179.90205 * 1 2 3 30 30 H 1.08993 * 109.47142 * 59.90823 * 1 2 3 31 31 H 1.08998 * 109.63278 * 292.61350 * 4 2 1 32 32 H 1.08993 * 109.62814 * 53.21246 * 4 2 1 33 33 H 1.07993 * 125.58649 * 0.02562 * 9 8 6 34 34 H 1.07998 * 124.71951 * 180.02562 * 11 10 9 35 35 H 1.08996 * 109.64141 * 169.04035 * 13 5 4 36 36 H 1.09005 * 109.63648 * 289.65222 * 13 5 4 37 37 H 1.09004 * 111.00664 * 325.00277 * 15 14 13 38 38 H 1.08997 * 111.01377 * 88.87018 * 15 14 13 39 39 H 1.09004 * 110.35293 * 155.23155 * 16 15 14 40 40 H 1.09001 * 110.35152 * 277.51219 * 16 15 14 41 41 H 0.96998 * 120.00065 * 179.97438 * 21 20 18 42 42 H 1.09004 * 109.90806 * 242.14011 * 26 17 16 43 43 H 1.09006 * 109.90780 * 120.88505 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0420 -0.7245 1.2500 5 7 3.5034 -0.8620 1.1441 6 6 4.3132 -0.4733 2.1489 7 8 3.8533 0.1215 3.1051 8 6 5.7546 -0.7687 2.0892 9 6 6.6472 -0.2779 2.9784 10 16 8.2053 -0.8493 2.5686 11 6 7.5759 -1.7093 1.2342 12 7 6.3018 -1.5500 1.1544 13 6 4.0530 -1.4377 -0.0953 14 6 3.4232 -0.7175 -1.2831 15 6 3.8336 -1.4113 -2.6014 16 6 3.7408 -0.2385 -3.6108 17 7 4.2019 0.9448 -2.8608 18 6 4.7292 2.0828 -3.4105 19 1 5.0390 2.8972 -2.7724 20 6 4.8653 2.1896 -4.7877 21 7 4.4882 1.1969 -5.5654 22 14 5.5839 3.7423 -5.5376 23 1 7.0577 3.6004 -5.6523 24 1 5.0008 3.9563 -6.8864 25 1 5.2646 4.9045 -4.6702 26 6 4.0014 0.6992 -1.4236 27 8 2.0080 -0.6774 -1.1662 28 1 -0.3633 0.5123 0.8908 29 1 -0.3632 -1.0277 -0.0018 30 1 -0.3633 0.5152 -0.8891 31 1 1.7923 -0.1437 2.1380 32 1 1.5849 -1.7118 1.3140 33 1 6.4138 0.3684 3.8115 34 1 8.1648 -2.3073 0.5546 35 1 5.1341 -1.3005 -0.1150 36 1 3.8147 -2.5003 -0.1428 37 1 4.8521 -1.7950 -2.5404 38 1 3.1333 -2.2057 -2.8595 39 1 4.3908 -0.4222 -4.4663 40 1 2.7105 -0.1015 -3.9390 41 1 4.5830 1.2718 -6.5278 42 1 3.3004 1.4282 -1.0167 43 1 4.9548 0.7647 -0.8992 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071142955.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:37 Heat of formation + Delta-G solvation = 24.532147 kcal Electronic energy + Delta-G solvation = -28456.256483 eV Core-core repulsion = 24630.474840 eV Total energy + Delta-G solvation = -3825.781642 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.00769 -39.62905 -38.30079 -36.18116 -34.65219 -33.09412 -31.35644 -30.82535 -29.30815 -28.16074 -27.46628 -25.73745 -25.22490 -23.72003 -22.41732 -21.45874 -20.24546 -19.60184 -19.06522 -18.42803 -16.99731 -16.84084 -16.33714 -15.99792 -15.66197 -15.42109 -14.75991 -14.69095 -14.28905 -13.97100 -13.71536 -13.60381 -13.53154 -13.30158 -12.84864 -12.54670 -12.28273 -12.15464 -12.08569 -11.83384 -11.55688 -11.45713 -11.02163 -10.87400 -10.84224 -10.49013 -10.36701 -10.18009 -10.09760 -9.99037 -9.88186 -9.61418 -9.50665 -9.31346 -9.22774 -8.62180 -8.26597 -6.80145 -5.62731 -3.04020 0.32946 1.03403 1.37660 1.80571 2.94757 3.25607 3.40430 3.45576 3.47796 3.86431 3.99176 4.49576 4.62509 4.84010 4.94517 5.06455 5.14128 5.17213 5.22624 5.38194 5.46055 5.50630 5.58604 5.61680 5.71452 5.74814 5.81060 5.93972 6.11156 6.19468 6.26025 6.31012 6.49351 6.56869 6.57324 6.66723 6.73582 7.14280 7.38714 7.59962 7.65315 7.74610 7.88190 8.07212 8.38007 9.24565 9.84685 10.50621 11.41091 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.009930 B = 0.004608 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.082450 B = 6074.734068 C = 7830.627431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.070 3.930 3 H 0.067 0.933 4 C 0.084 3.916 5 N -0.593 5.593 6 C 0.596 3.404 7 O -0.542 6.542 8 C 0.011 3.989 9 C -0.223 4.223 10 S 0.211 5.789 11 C 0.001 3.999 12 N -0.434 5.434 13 C 0.075 3.925 14 C 0.093 3.907 15 C -0.128 4.128 16 C 0.157 3.843 17 N -0.599 5.599 18 C -0.221 4.221 19 H 0.074 0.926 20 C -0.010 4.010 21 N -0.921 5.921 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.124 3.876 27 O -0.356 6.356 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.189 0.811 34 H 0.208 0.792 35 H 0.143 0.857 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.017 0.983 41 H 0.252 0.748 42 H 0.023 0.977 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.647 -8.800 16.187 18.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.011 3.989 3 H 0.085 0.915 4 C -0.038 4.038 5 N -0.324 5.324 6 C 0.382 3.618 7 O -0.421 6.421 8 C -0.124 4.124 9 C -0.365 4.365 10 S 0.466 5.534 11 C -0.298 4.298 12 N -0.148 5.148 13 C -0.048 4.048 14 C 0.052 3.948 15 C -0.167 4.167 16 C 0.033 3.967 17 N -0.325 5.325 18 C -0.349 4.349 19 H 0.092 0.908 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.744 3.256 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.208 1.208 26 C -0.003 4.003 27 O -0.275 6.275 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.093 0.907 33 H 0.206 0.794 34 H 0.224 0.776 35 H 0.159 0.841 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.125 0.875 40 H 0.035 0.965 41 H 0.063 0.937 42 H 0.041 0.959 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 4.012 -8.633 16.308 18.883 hybrid contribution -0.508 1.115 -0.273 1.256 sum 3.503 -7.518 16.035 18.053 Atomic orbital electron populations 1.21675 0.92463 1.02815 1.02718 1.22440 0.95257 0.96299 0.84895 0.91485 1.22419 0.79380 1.01825 1.00225 1.47981 1.06548 1.61084 1.16822 1.17084 0.83757 0.78552 0.82394 1.90782 1.75610 1.41701 1.33961 1.20444 0.96299 1.01079 0.94554 1.26596 0.97049 1.06896 1.05954 1.82909 1.07568 1.40149 1.22784 1.28694 0.94144 1.04419 1.02553 1.67010 1.09702 1.15933 1.22196 1.23246 1.03246 0.97046 0.81282 1.22371 0.80757 0.96440 0.95242 1.22975 1.00201 0.99705 0.93803 1.21942 0.98755 0.82193 0.93839 1.44489 1.72979 1.16093 0.98967 1.19050 1.33010 0.92601 0.90288 0.90764 1.24759 1.01677 0.98247 0.95844 1.69796 1.53165 1.30638 1.03346 0.86093 0.78625 0.82330 0.78584 1.21611 1.21594 1.20825 1.21681 0.96709 0.93311 0.88552 1.87845 1.20624 1.76726 1.42312 0.91186 0.91827 0.91207 0.88388 0.90654 0.79366 0.77558 0.84062 0.91155 0.90600 0.91114 0.87530 0.96518 0.93737 0.95914 0.95907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.57 37.16 0.36 -1.40 16 2 C 0.07 1.11 3.17 -26.58 -0.08 1.02 16 3 H 0.07 1.20 6.25 -51.93 -0.32 0.87 16 4 C 0.08 1.22 5.93 -3.53 -0.02 1.20 16 5 N -0.59 -9.53 2.95 -173.96 -0.51 -10.04 16 6 C 0.60 9.81 7.67 -12.59 -0.10 9.71 16 7 O -0.54 -9.80 16.21 5.24 0.09 -9.71 16 8 C 0.01 0.15 6.46 -84.53 -0.55 -0.40 16 9 C -0.22 -2.50 10.62 29.65 0.32 -2.18 16 10 S 0.21 1.64 22.97 -107.50 -2.47 -0.82 16 11 C 0.00 0.01 12.17 51.43 0.63 0.63 16 12 N -0.43 -5.65 6.85 -12.36 -0.08 -5.73 16 13 C 0.07 1.22 4.65 -3.86 -0.02 1.20 16 14 C 0.09 1.77 0.81 -89.73 -0.07 1.70 16 15 C -0.13 -2.52 6.21 -24.86 -0.15 -2.67 16 16 C 0.16 3.94 5.89 -2.44 -0.01 3.93 16 17 N -0.60 -15.91 3.40 -170.24 -0.58 -16.49 16 18 C -0.22 -6.33 10.28 -15.06 -0.15 -6.49 16 19 H 0.07 2.08 7.83 -52.49 -0.41 1.67 16 20 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 21 N -0.92 -27.05 10.09 55.49 0.56 -26.49 16 22 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 C 0.12 2.80 6.34 -3.33 -0.02 2.78 16 27 O -0.36 -6.75 9.90 -35.23 -0.35 -7.09 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.10 1.39 7.06 -51.93 -0.37 1.02 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.19 1.90 8.04 -52.49 -0.42 1.48 16 34 H 0.21 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.14 2.33 4.10 -60.27 -0.25 2.09 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.39 8.01 -51.93 -0.42 0.97 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.11 2.93 5.88 -51.93 -0.31 2.63 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.02 0.55 6.03 -51.93 -0.31 0.23 16 43 H 0.02 0.53 7.61 -51.93 -0.40 0.13 16 LS Contribution 352.68 15.07 5.31 5.31 Total: -1.00 -34.11 352.68 -8.76 -42.87 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -5.72 Total: 2.22 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 0.02 Total: 8.66 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.62 Total: -58.76 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.26 Total: -16.81 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.47 Total: -0.82 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.11 -8.76 -42.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071142955.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.398 kcal (2) G-P(sol) polarization free energy of solvation -34.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds