Wall clock time and date at job start Tue Mar 31 2020 20:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.50792 * 2 1 4 4 C 1.53286 * 109.51392 * 120.09481 * 2 1 3 5 5 N 1.47165 * 108.49100 * 172.91381 * 4 2 1 6 6 C 1.34778 * 121.06122 * 128.77193 * 5 4 2 7 7 O 1.21638 * 119.99779 * 352.60835 * 6 5 4 8 8 C 1.47264 * 120.00132 * 172.61109 * 6 5 4 9 9 C 1.35212 * 123.13901 * 172.08760 * 8 6 5 10 10 S 1.70944 * 108.82530 * 179.97438 * 9 8 6 11 11 C 1.70775 * 91.12958 * 0.02562 * 10 9 8 12 12 N 1.28644 * 110.55563 * 359.76437 * 11 10 9 13 13 C 1.47288 * 117.88247 * 308.79237 * 5 4 2 14 14 C 1.52513 * 108.46402 * 49.34686 * 13 5 4 15 15 C 1.54525 * 110.04302 * 187.27154 * 14 13 5 16 16 C 1.55019 * 101.53011 * 206.94066 * 15 14 13 17 17 N 1.47481 * 104.90384 * 36.36746 * 16 15 14 18 18 C 1.36935 * 125.66485 * 155.97766 * 17 16 15 19 19 H 1.08001 * 120.00202 * 180.02562 * 18 17 16 20 20 C 1.38811 * 119.99751 * 0.03049 * 18 17 16 21 21 N 1.31620 * 120.00529 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99754 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47028 * 90.00148 * 22 20 18 24 24 H 1.48501 * 109.46925 * 209.99933 * 22 20 18 25 25 H 1.48497 * 109.47241 * 329.99675 * 22 20 18 26 26 C 1.47184 * 108.66925 * 335.98348 * 17 16 15 27 27 O 1.42064 * 111.13777 * 309.79061 * 14 13 5 28 28 H 1.08995 * 109.47279 * 299.90310 * 1 2 3 29 29 H 1.08999 * 109.46324 * 179.90205 * 1 2 3 30 30 H 1.08993 * 109.47142 * 59.90823 * 1 2 3 31 31 H 1.08998 * 109.63278 * 292.61350 * 4 2 1 32 32 H 1.08993 * 109.62814 * 53.21246 * 4 2 1 33 33 H 1.07993 * 125.58649 * 0.02562 * 9 8 6 34 34 H 1.07998 * 124.71951 * 180.02562 * 11 10 9 35 35 H 1.08996 * 109.64141 * 169.04035 * 13 5 4 36 36 H 1.09005 * 109.63648 * 289.65222 * 13 5 4 37 37 H 1.09004 * 111.00664 * 325.00277 * 15 14 13 38 38 H 1.08997 * 111.01377 * 88.87018 * 15 14 13 39 39 H 1.09004 * 110.35293 * 155.23155 * 16 15 14 40 40 H 1.09001 * 110.35152 * 277.51219 * 16 15 14 41 41 H 0.96998 * 120.00065 * 179.97438 * 21 20 18 42 42 H 1.09004 * 109.90806 * 242.14011 * 26 17 16 43 43 H 1.09006 * 109.90780 * 120.88505 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0420 -0.7245 1.2500 5 7 3.5034 -0.8620 1.1441 6 6 4.3132 -0.4733 2.1489 7 8 3.8533 0.1215 3.1051 8 6 5.7546 -0.7687 2.0892 9 6 6.6472 -0.2779 2.9784 10 16 8.2053 -0.8493 2.5686 11 6 7.5759 -1.7093 1.2342 12 7 6.3018 -1.5500 1.1544 13 6 4.0530 -1.4377 -0.0953 14 6 3.4232 -0.7175 -1.2831 15 6 3.8336 -1.4113 -2.6014 16 6 3.7408 -0.2385 -3.6108 17 7 4.2019 0.9448 -2.8608 18 6 4.7292 2.0828 -3.4105 19 1 5.0390 2.8972 -2.7724 20 6 4.8653 2.1896 -4.7877 21 7 4.4882 1.1969 -5.5654 22 14 5.5839 3.7423 -5.5376 23 1 7.0577 3.6004 -5.6523 24 1 5.0008 3.9563 -6.8864 25 1 5.2646 4.9045 -4.6702 26 6 4.0014 0.6992 -1.4236 27 8 2.0080 -0.6774 -1.1662 28 1 -0.3633 0.5123 0.8908 29 1 -0.3632 -1.0277 -0.0018 30 1 -0.3633 0.5152 -0.8891 31 1 1.7923 -0.1437 2.1380 32 1 1.5849 -1.7118 1.3140 33 1 6.4138 0.3684 3.8115 34 1 8.1648 -2.3073 0.5546 35 1 5.1341 -1.3005 -0.1150 36 1 3.8147 -2.5003 -0.1428 37 1 4.8521 -1.7950 -2.5404 38 1 3.1333 -2.2057 -2.8595 39 1 4.3908 -0.4222 -4.4663 40 1 2.7105 -0.1015 -3.9390 41 1 4.5830 1.2718 -6.5278 42 1 3.3004 1.4282 -1.0167 43 1 4.9548 0.7647 -0.8992 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071142955.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:37 Heat of formation + Delta-G solvation = 1.257571 kcal Electronic energy + Delta-G solvation = -28457.265744 eV Core-core repulsion = 24630.474840 eV Total energy + Delta-G solvation = -3826.790904 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.17032 -40.83622 -39.51864 -37.87599 -35.94598 -34.84905 -33.04717 -31.72693 -31.06009 -29.77780 -28.54193 -27.53453 -26.17617 -25.46219 -23.48918 -22.89526 -22.03046 -20.73005 -20.30827 -19.52558 -18.97499 -18.17578 -17.46794 -17.21275 -16.88555 -16.80078 -16.47596 -16.01284 -15.61703 -15.48687 -15.09459 -14.94793 -14.84132 -14.37842 -14.16116 -14.12935 -13.79837 -13.45571 -13.20561 -13.12981 -13.04323 -12.88319 -12.78819 -12.67446 -12.31430 -12.13962 -12.02769 -11.95076 -11.74640 -11.56097 -11.25777 -10.99885 -10.77312 -10.76885 -10.33816 -10.03339 -9.55810 -8.94015 -7.80196 -5.25713 -0.48736 0.32235 0.61829 0.85275 1.43832 1.46251 1.54957 1.79671 2.17830 2.46064 2.59264 3.00265 3.28153 3.49141 3.57862 3.75187 3.79518 3.88379 3.96430 4.05266 4.12114 4.19038 4.32745 4.41664 4.46375 4.54588 4.61314 4.64297 4.69143 4.76745 4.90902 4.94710 4.96761 5.00325 5.13338 5.22368 5.39556 5.40987 5.60517 5.77126 6.10472 6.26123 6.30002 6.39892 6.89802 7.07209 7.72044 8.37555 9.21554 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.009930 B = 0.004608 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.082450 B = 6074.734068 C = 7830.627431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.066 3.934 3 H 0.038 0.962 4 C 0.088 3.912 5 N -0.599 5.599 6 C 0.589 3.411 7 O -0.570 6.570 8 C -0.024 4.024 9 C -0.237 4.237 10 S 0.306 5.694 11 C -0.009 4.009 12 N -0.465 5.465 13 C 0.087 3.913 14 C 0.102 3.898 15 C -0.113 4.113 16 C 0.162 3.838 17 N -0.618 5.618 18 C -0.246 4.246 19 H 0.071 0.929 20 C -0.059 4.059 21 N -0.944 5.944 22 Si 0.981 3.019 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.276 1.276 26 C 0.127 3.873 27 O -0.372 6.372 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.192 0.808 34 H 0.240 0.760 35 H 0.146 0.854 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.081 0.919 40 H -0.018 1.018 41 H 0.250 0.750 42 H 0.005 0.995 43 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.214 -9.797 17.407 20.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.056 0.944 4 C -0.035 4.035 5 N -0.330 5.330 6 C 0.377 3.623 7 O -0.451 6.451 8 C -0.158 4.158 9 C -0.380 4.380 10 S 0.563 5.437 11 C -0.306 4.306 12 N -0.181 5.181 13 C -0.036 4.036 14 C 0.061 3.939 15 C -0.152 4.152 16 C 0.037 3.963 17 N -0.344 5.344 18 C -0.375 4.375 19 H 0.089 0.911 20 C -0.252 4.252 21 N -0.593 5.593 22 Si 0.808 3.192 23 H -0.205 1.205 24 H -0.216 1.216 25 H -0.201 1.201 26 C 0.002 3.998 27 O -0.292 6.292 28 H 0.114 0.886 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.210 0.790 34 H 0.256 0.744 35 H 0.163 0.837 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.000 1.000 41 H 0.060 0.940 42 H 0.023 0.977 43 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 5.591 -9.645 17.549 20.790 hybrid contribution -0.908 1.478 -0.596 1.834 sum 4.683 -8.167 16.953 19.392 Atomic orbital electron populations 1.21684 0.89843 1.04080 1.03342 1.22620 0.97264 0.94661 0.84686 0.94399 1.22450 0.79008 1.02761 0.99245 1.48075 1.07105 1.61072 1.16727 1.17528 0.85003 0.77850 0.81948 1.90743 1.76467 1.42977 1.34893 1.20259 0.95439 1.03533 0.96587 1.26899 0.99151 1.06487 1.05463 1.82597 1.03769 1.37229 1.20143 1.29274 0.93540 1.04252 1.03555 1.66878 1.11483 1.16918 1.22806 1.23125 1.03228 0.97293 0.79978 1.22243 0.81186 0.94122 0.96379 1.22840 1.02011 0.98008 0.92295 1.21703 0.95823 0.84055 0.94671 1.44768 1.72811 1.16106 1.00744 1.19357 1.33645 0.93572 0.90920 0.91067 1.25604 1.02089 1.01408 0.96101 1.70033 1.53738 1.32250 1.03277 0.85057 0.78074 0.78683 0.77347 1.20524 1.21617 1.20148 1.21742 0.96235 0.95503 0.86364 1.87820 1.20363 1.76949 1.44047 0.88635 0.90185 0.92508 0.88159 0.88485 0.79032 0.74413 0.83748 0.89352 0.88772 0.88987 0.90127 1.00020 0.94042 0.97691 0.96227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 9.57 71.98 0.69 -2.53 16 2 C 0.07 2.10 3.17 30.69 0.10 2.20 16 3 H 0.04 1.42 6.25 -2.39 -0.01 1.41 16 4 C 0.09 2.48 5.93 86.35 0.51 2.99 16 5 N -0.60 -19.00 2.95 -822.53 -2.42 -21.42 16 6 C 0.59 19.39 7.67 86.62 0.66 20.06 16 7 O -0.57 -20.88 16.21 -4.15 -0.07 -20.94 16 8 C -0.02 -0.65 6.46 40.56 0.26 -0.39 16 9 C -0.24 -4.98 10.62 67.12 0.71 -4.27 16 10 S 0.31 3.80 22.97 -56.49 -1.30 2.51 16 11 C -0.01 -0.13 12.17 130.71 1.59 1.46 16 12 N -0.47 -11.38 6.85 -193.03 -1.32 -12.70 16 13 C 0.09 2.73 4.65 86.07 0.40 3.14 16 14 C 0.10 3.87 0.81 -10.22 -0.01 3.87 16 15 C -0.11 -4.40 6.21 31.80 0.20 -4.20 16 16 C 0.16 8.40 5.89 86.88 0.51 8.91 16 17 N -0.62 -33.93 3.40 -692.50 -2.36 -36.28 16 18 C -0.25 -14.49 10.28 84.03 0.86 -13.62 16 19 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 20 C -0.06 -3.42 5.49 84.86 0.47 -2.95 16 21 N -0.94 -56.87 10.09 21.65 0.22 -56.65 16 22 Si 0.98 46.42 29.55 68.60 2.03 48.45 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 26 C 0.13 5.94 6.34 86.47 0.55 6.48 16 27 O -0.37 -14.13 9.90 -148.97 -1.47 -15.61 16 28 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.10 2.80 7.06 -2.39 -0.02 2.78 16 32 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.19 3.72 8.04 -2.91 -0.02 3.70 16 34 H 0.24 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.15 4.62 4.10 -18.86 -0.08 4.55 16 36 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 37 H 0.09 3.32 8.01 -2.39 -0.02 3.30 16 38 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 39 H 0.08 4.60 5.88 -2.38 -0.01 4.58 16 40 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 41 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 42 H 0.01 0.26 6.03 -2.38 -0.01 0.25 16 43 H 0.02 0.93 7.61 -2.38 -0.02 0.91 16 Total: -1.00 -77.15 352.68 1.78 -75.36 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.97 Total: 16.14 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: 7.51 Total: 21.15 kcal Atomic # 7 Polarization: -121.17 SS G_CDS: -5.88 Total: -127.05 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -1.54 Total: -36.55 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Atomic # 16 Polarization: 3.80 SS G_CDS: -1.30 Total: 2.51 kcal Total: -77.15 1.78 -75.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071142955.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.622 kcal (2) G-P(sol) polarization free energy of solvation -77.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds