Wall clock time and date at job start Tue Mar 31 2020 20:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.50648 * 2 1 4 4 C 1.53282 * 109.51349 * 120.09474 * 2 1 3 5 5 N 1.47159 * 108.56308 * 172.90345 * 4 2 1 6 6 C 1.34777 * 121.07092 * 128.75806 * 5 4 2 7 7 O 1.21634 * 120.00137 * 1.77224 * 6 5 4 8 8 C 1.47268 * 119.99823 * 181.77154 * 6 5 4 9 9 C 1.35206 * 123.13823 * 172.38117 * 8 6 5 10 10 S 1.70946 * 108.82670 * 179.97438 * 9 8 6 11 11 C 1.70772 * 91.12579 * 0.02562 * 10 9 8 12 12 N 1.28646 * 110.56431 * 359.97438 * 11 10 9 13 13 C 1.47330 * 117.85509 * 309.03645 * 5 4 2 14 14 C 1.51948 * 108.62143 * 48.87264 * 13 5 4 15 15 C 1.54389 * 110.22511 * 73.56523 * 14 13 5 16 16 C 1.54458 * 102.86009 * 152.42563 * 15 14 13 17 17 N 1.47082 * 107.30566 * 338.50149 * 16 15 14 18 18 C 1.36933 * 125.63284 * 179.01717 * 17 16 15 19 19 H 1.08000 * 120.00621 * 185.08190 * 18 17 16 20 20 C 1.38814 * 119.99789 * 5.08861 * 18 17 16 21 21 N 1.31617 * 120.00056 * 354.81467 * 20 18 17 22 22 Si 1.86801 * 120.00039 * 174.81597 * 20 18 17 23 23 H 1.48507 * 109.46778 * 94.99981 * 22 20 18 24 24 H 1.48496 * 109.47074 * 214.99456 * 22 20 18 25 25 H 1.48489 * 109.47234 * 334.99829 * 22 20 18 26 26 C 1.47581 * 108.73943 * 359.02216 * 17 16 15 27 27 O 1.41884 * 111.52115 * 310.16770 * 14 13 5 28 28 H 1.09001 * 109.47076 * 299.90395 * 1 2 3 29 29 H 1.08998 * 109.46995 * 59.90169 * 1 2 3 30 30 H 1.08994 * 109.46803 * 179.90684 * 1 2 3 31 31 H 1.08997 * 109.61637 * 53.17892 * 4 2 1 32 32 H 1.08999 * 109.61980 * 292.62716 * 4 2 1 33 33 H 1.07998 * 125.58917 * 359.96349 * 9 8 6 34 34 H 1.08005 * 124.71773 * 180.27072 * 11 10 9 35 35 H 1.08995 * 109.67871 * 168.67157 * 13 5 4 36 36 H 1.09006 * 109.67107 * 289.21262 * 13 5 4 37 37 H 1.08998 * 110.73337 * 270.76405 * 15 14 13 38 38 H 1.08993 * 110.73276 * 33.90102 * 15 14 13 39 39 H 1.09000 * 109.88006 * 97.93747 * 16 15 14 40 40 H 1.09010 * 109.87445 * 218.93133 * 16 15 14 41 41 H 0.96997 * 120.00347 * 180.02562 * 21 20 18 42 42 H 1.08997 * 110.37337 * 264.46691 * 26 17 16 43 43 H 1.09008 * 110.37193 * 142.12678 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0420 -0.7245 1.2500 5 7 3.5033 -0.8631 1.1456 6 6 4.3125 -0.4746 2.1509 7 8 3.8361 -0.0304 3.1781 8 6 5.7737 -0.5879 2.0058 9 6 6.6472 -0.0829 2.9057 10 16 8.2383 -0.4208 2.3797 11 6 7.6458 -1.2156 0.9892 12 7 6.3596 -1.1993 0.9729 13 6 4.0536 -1.4345 -0.0959 14 6 3.4217 -0.7219 -1.2798 15 6 4.0033 0.7015 -1.4185 16 6 3.8582 0.9864 -2.9296 17 7 3.7517 -0.3124 -3.6115 18 6 3.5905 -0.4952 -4.9590 19 1 3.4402 -1.4886 -5.3551 20 6 3.6205 0.5965 -5.8159 21 7 3.7013 1.8155 -5.3262 22 14 3.5462 0.3354 -7.6641 23 1 2.1403 0.4609 -8.1255 24 1 4.3829 1.3577 -8.3424 25 1 4.0563 -1.0196 -7.9935 26 6 3.8469 -1.3863 -2.6036 27 8 2.0080 -0.6775 -1.1666 28 1 -0.3633 0.5123 0.8909 29 1 -0.3633 0.5154 -0.8891 30 1 -0.3633 -1.0276 -0.0017 31 1 1.5843 -1.7116 1.3141 32 1 1.7920 -0.1437 2.1378 33 1 6.3831 0.4472 3.8088 34 1 8.2648 -1.6729 0.2314 35 1 5.1341 -1.2931 -0.1177 36 1 3.8211 -2.4984 -0.1448 37 1 3.4220 1.4145 -0.8339 38 1 5.0508 0.7213 -1.1180 39 1 2.9591 1.5753 -3.1112 40 1 4.7338 1.5263 -3.2907 41 1 3.7219 2.5783 -5.9249 42 1 4.8717 -1.7509 -2.5334 43 1 3.1690 -2.2025 -2.8536 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071142957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:42 Heat of formation + Delta-G solvation = 27.125334 kcal Electronic energy + Delta-G solvation = -28410.977552 eV Core-core repulsion = 24585.308359 eV Total energy + Delta-G solvation = -3825.669193 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.07092 -39.64019 -38.34633 -36.17524 -34.64287 -32.99377 -31.35231 -30.88494 -29.24101 -28.36954 -27.53707 -25.57964 -25.29273 -23.68870 -22.42973 -21.47615 -20.13513 -19.67697 -19.13847 -18.50777 -16.97066 -16.93226 -16.37555 -15.92145 -15.60815 -15.51239 -14.73139 -14.58074 -14.34620 -14.01108 -13.83516 -13.66243 -13.43992 -13.25737 -12.92688 -12.47749 -12.34853 -12.14244 -11.97641 -11.92223 -11.72763 -11.50532 -10.93640 -10.88188 -10.82663 -10.44005 -10.23778 -10.20870 -10.04782 -10.03893 -9.96163 -9.65457 -9.46399 -9.30191 -9.18904 -8.51839 -8.27171 -6.75940 -5.65446 -2.97655 0.27007 0.96878 1.31072 1.74719 2.92683 3.21910 3.43958 3.48921 3.51082 3.81007 4.01962 4.53462 4.59739 4.83784 4.89977 5.01067 5.14893 5.16920 5.24691 5.37088 5.38190 5.52622 5.57600 5.65140 5.72373 5.76963 5.92243 5.92946 6.11695 6.14116 6.25057 6.33771 6.53520 6.54853 6.62212 6.63600 6.73151 7.08825 7.37575 7.61707 7.68162 7.79995 7.89396 8.04554 8.31172 9.27703 9.88038 10.54752 11.46800 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012650 B = 0.003998 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.933025 B = 7001.551372 C = 8616.245021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.071 3.929 3 H 0.064 0.936 4 C 0.083 3.917 5 N -0.588 5.588 6 C 0.594 3.406 7 O -0.545 6.545 8 C 0.012 3.988 9 C -0.224 4.224 10 S 0.215 5.785 11 C 0.002 3.998 12 N -0.432 5.432 13 C 0.050 3.950 14 C 0.093 3.907 15 C -0.164 4.164 16 C 0.186 3.814 17 N -0.599 5.599 18 C -0.223 4.223 19 H 0.078 0.922 20 C -0.008 4.008 21 N -0.922 5.922 22 Si 0.910 3.090 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.155 3.845 27 O -0.348 6.348 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.189 0.811 34 H 0.209 0.791 35 H 0.163 0.837 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.042 0.958 40 H 0.044 0.956 41 H 0.251 0.749 42 H 0.038 0.962 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.941 -5.251 17.940 19.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.012 3.988 3 H 0.082 0.918 4 C -0.040 4.040 5 N -0.319 5.319 6 C 0.380 3.620 7 O -0.423 6.423 8 C -0.122 4.122 9 C -0.366 4.366 10 S 0.470 5.530 11 C -0.297 4.297 12 N -0.147 5.147 13 C -0.073 4.073 14 C 0.052 3.948 15 C -0.202 4.202 16 C 0.062 3.938 17 N -0.325 5.325 18 C -0.351 4.351 19 H 0.096 0.904 20 C -0.204 4.204 21 N -0.570 5.570 22 Si 0.741 3.259 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.206 1.206 26 C 0.028 3.972 27 O -0.267 6.267 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.207 0.793 34 H 0.226 0.774 35 H 0.179 0.821 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.271 -5.037 18.059 20.108 hybrid contribution -0.957 0.134 -0.854 1.289 sum 6.314 -4.903 17.205 18.971 Atomic orbital electron populations 1.21677 0.92481 1.02914 1.02664 1.22428 0.95323 0.95990 0.85063 0.91846 1.22435 0.79464 1.01977 1.00133 1.47980 1.06515 1.60584 1.16819 1.17077 0.83953 0.77815 0.83155 1.90784 1.75647 1.47361 1.28522 1.20470 0.96018 1.03159 0.92532 1.26585 0.97053 1.06847 1.06128 1.82939 1.05906 1.47607 1.16575 1.28794 0.94313 1.03632 1.02939 1.66742 1.08292 1.17856 1.21803 1.23560 1.05196 0.97102 0.81487 1.22338 0.80941 0.96244 0.95277 1.23331 0.99589 0.96095 1.01218 1.21077 1.00625 0.87852 0.84268 1.44420 1.85818 1.00048 1.02216 1.19058 1.42124 0.93557 0.80407 0.90412 1.24787 1.02385 0.95283 0.97980 1.69980 1.57150 0.97050 1.32812 0.86120 0.77408 0.77056 0.85331 1.21757 1.21754 1.20633 1.21301 0.97437 0.92438 0.85998 1.87894 1.20442 1.76550 1.41768 0.91288 0.91097 0.91799 0.90640 0.88512 0.79333 0.77439 0.82150 0.91484 0.92285 0.92086 0.94009 0.93784 0.93892 0.94505 0.93331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.57 37.16 0.36 -1.46 16 2 C 0.07 1.12 3.19 -26.58 -0.08 1.03 16 3 H 0.06 1.07 6.23 -51.93 -0.32 0.75 16 4 C 0.08 1.19 5.91 -3.54 -0.02 1.17 16 5 N -0.59 -9.17 2.95 -174.27 -0.51 -9.68 16 6 C 0.59 9.33 7.69 -12.59 -0.10 9.23 16 7 O -0.54 -9.46 16.21 5.25 0.09 -9.38 16 8 C 0.01 0.16 6.55 -84.52 -0.55 -0.39 16 9 C -0.22 -2.29 10.62 29.65 0.31 -1.98 16 10 S 0.21 1.48 22.97 -107.50 -2.47 -0.99 16 11 C 0.00 0.01 12.17 51.43 0.63 0.64 16 12 N -0.43 -5.29 6.67 -12.36 -0.08 -5.38 16 13 C 0.05 0.79 4.98 -4.12 -0.02 0.77 16 14 C 0.09 1.77 0.84 -89.85 -0.08 1.69 16 15 C -0.16 -3.31 5.86 -25.24 -0.15 -3.46 16 16 C 0.19 4.73 5.39 -2.96 -0.02 4.71 16 17 N -0.60 -15.71 3.40 -170.32 -0.58 -16.29 16 18 C -0.22 -6.34 10.27 -15.06 -0.15 -6.49 16 19 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 20 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 21 N -0.92 -27.64 10.34 55.49 0.57 -27.06 16 22 Si 0.91 22.40 29.56 -169.99 -5.02 17.37 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 26 C 0.16 3.32 6.42 -2.88 -0.02 3.30 16 27 O -0.35 -6.79 9.93 -35.22 -0.35 -7.14 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.10 1.35 7.09 -51.93 -0.37 0.98 16 33 H 0.19 1.73 8.04 -52.49 -0.42 1.31 16 34 H 0.21 1.11 8.06 -52.48 -0.42 0.68 16 35 H 0.16 2.49 3.55 -84.03 -0.30 2.19 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.17 6.07 -51.93 -0.32 0.85 16 38 H 0.06 1.17 7.80 -51.93 -0.41 0.77 16 39 H 0.04 1.19 7.53 -51.93 -0.39 0.80 16 40 H 0.04 1.22 7.37 -51.92 -0.38 0.84 16 41 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.04 0.74 7.99 -51.93 -0.42 0.33 16 43 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 LS Contribution 353.02 15.07 5.32 5.32 Total: -1.00 -34.57 353.02 -8.86 -43.42 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.83 Total: 1.37 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 0.01 Total: 8.43 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: -0.60 Total: -58.41 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.26 Total: -16.52 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.47 Total: -0.99 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.57 -8.86 -43.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071142957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.550 kcal (2) G-P(sol) polarization free energy of solvation -34.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds