Wall clock time and date at job start Tue Mar 31 2020 20:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.50968 * 2 1 4 4 C 1.53281 * 109.51209 * 239.90744 * 2 1 3 5 5 N 1.47167 * 108.53185 * 187.13755 * 4 2 1 6 6 C 1.34781 * 121.05304 * 231.10233 * 5 4 2 7 7 O 1.21686 * 120.00474 * 6.57369 * 6 5 4 8 8 C 1.46686 * 119.99661 * 186.57561 * 6 5 4 9 9 C 1.35657 * 126.13026 * 195.70389 * 8 6 5 10 10 N 1.30943 * 114.19282 * 179.73618 * 9 8 6 11 11 C 1.29431 * 117.36350 * 0.02562 * 10 9 8 12 12 S 1.70954 * 110.38927 * 359.97438 * 11 10 9 13 13 C 1.47304 * 117.88638 * 51.37150 * 5 4 2 14 14 C 1.52941 * 108.17612 * 310.29135 * 13 5 4 15 15 C 1.54489 * 110.01765 * 173.16119 * 14 13 5 16 16 C 1.55020 * 101.52752 * 153.17416 * 15 14 13 17 17 N 1.47482 * 104.90910 * 323.64523 * 16 15 14 18 18 C 1.36939 * 125.66572 * 204.02914 * 17 16 15 19 19 H 1.08007 * 120.00188 * 164.18211 * 18 17 16 20 20 C 1.38814 * 119.99646 * 344.18429 * 18 17 16 21 21 N 1.31618 * 120.00521 * 356.12212 * 20 18 17 22 22 Si 1.86801 * 119.99672 * 176.11937 * 20 18 17 23 23 H 1.48501 * 109.46980 * 94.46629 * 22 20 18 24 24 H 1.48496 * 109.47144 * 214.46400 * 22 20 18 25 25 H 1.48497 * 109.47509 * 334.46880 * 22 20 18 26 26 C 1.47184 * 108.67440 * 24.00542 * 17 16 15 27 27 O 1.42057 * 111.02859 * 50.66990 * 14 13 5 28 28 H 1.08997 * 109.46923 * 180.09168 * 1 2 3 29 29 H 1.09000 * 109.47482 * 300.08939 * 1 2 3 30 30 H 1.08999 * 109.47184 * 60.09947 * 1 2 3 31 31 H 1.08995 * 109.62464 * 67.42330 * 4 2 1 32 32 H 1.08998 * 109.78231 * 306.94007 * 4 2 1 33 33 H 1.08006 * 122.90585 * 359.71310 * 9 8 6 34 34 H 1.07999 * 124.79977 * 180.02562 * 11 10 9 35 35 H 1.09004 * 109.67879 * 70.07574 * 13 5 4 36 36 H 1.09000 * 109.68107 * 190.62525 * 13 5 4 37 37 H 1.08994 * 111.02064 * 271.24138 * 15 14 13 38 38 H 1.09008 * 111.01575 * 35.11576 * 15 14 13 39 39 H 1.09006 * 110.35517 * 204.78649 * 16 15 14 40 40 H 1.08998 * 110.44166 * 82.54871 * 16 15 14 41 41 H 0.96988 * 120.00446 * 180.02562 * 21 20 18 42 42 H 1.09001 * 109.91658 * 239.12160 * 26 17 16 43 43 H 1.08997 * 110.06620 * 117.94165 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0419 -0.7244 -1.2501 5 7 3.5032 -0.8636 -1.1445 6 6 4.3129 -0.4776 -2.1505 7 8 3.8508 0.1032 -3.1148 8 6 5.7511 -0.7577 -2.0829 9 6 6.7143 -0.1853 -2.8477 10 7 7.9268 -0.6052 -2.5868 11 6 8.0611 -1.4937 -1.6553 12 16 6.5383 -1.8927 -0.9887 13 6 4.0524 -1.4438 0.0931 14 6 3.4242 -0.7144 1.2816 15 6 3.8383 -1.4008 2.6023 16 6 3.7458 -0.2230 3.6059 17 7 4.2032 0.9573 2.8490 18 6 4.7298 2.0989 3.3917 19 1 5.2665 2.7967 2.7659 20 6 4.5740 2.3593 4.7463 21 7 3.8556 1.5486 5.4940 22 14 5.3839 3.8604 5.5080 23 1 4.4166 4.9869 5.5305 24 1 5.8073 3.5438 6.8956 25 1 6.5716 4.2439 4.7034 26 6 4.0002 0.7042 1.4134 27 8 2.0089 -0.6766 1.1664 28 1 -0.3633 -1.0276 0.0016 29 1 -0.3634 0.5152 0.8892 30 1 -0.3633 0.5123 -0.8909 31 1 1.7927 -0.1432 -2.1378 32 1 1.5842 -1.7113 -1.3180 33 1 6.4996 0.5527 -3.6065 34 1 9.0022 -1.9216 -1.3428 35 1 3.8094 -2.5054 0.1402 36 1 5.1344 -1.3132 0.1111 37 1 3.1398 -2.1949 2.8659 38 1 4.8573 -1.7832 2.5413 39 1 4.3981 -0.4012 4.4609 40 1 2.7166 -0.0853 3.9374 41 1 3.7464 1.7308 6.4403 42 1 4.9523 0.7686 0.8867 43 1 3.2985 1.4294 1.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071144357.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:24 Heat of formation + Delta-G solvation = -4.618548 kcal Electronic energy + Delta-G solvation = -28393.115455 eV Core-core repulsion = 24566.069744 eV Total energy + Delta-G solvation = -3827.045711 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.01496 -40.85160 -39.79235 -37.88762 -36.12366 -34.88602 -33.16601 -31.82248 -31.04463 -29.90108 -28.21289 -27.69753 -26.45101 -25.46938 -23.41738 -22.67322 -21.95683 -21.08057 -20.30871 -19.62072 -18.94296 -18.20398 -17.74071 -17.41965 -16.88379 -16.78823 -16.43122 -15.97998 -15.60393 -15.43817 -15.16500 -15.07819 -15.00116 -14.83981 -14.25251 -14.17552 -13.85343 -13.48577 -13.25459 -13.19983 -13.09345 -12.81761 -12.74618 -12.63871 -12.31380 -12.17470 -12.06089 -11.90299 -11.81814 -11.73636 -11.26358 -11.03954 -10.73756 -10.72772 -10.50413 -9.99183 -9.67916 -8.86611 -7.92642 -5.30823 -0.82988 0.12072 0.51281 1.32290 1.43341 1.44330 1.53854 1.57853 1.99894 2.44737 2.53445 3.12203 3.23622 3.36302 3.40841 3.63339 3.68131 3.74388 3.91930 3.98997 4.03997 4.11003 4.20695 4.30247 4.40120 4.44085 4.52504 4.63689 4.65339 4.76753 4.89495 4.96118 4.98553 5.00162 5.03353 5.10565 5.28185 5.38567 5.58317 5.73800 5.96795 6.17240 6.24432 6.53476 6.75233 7.04933 7.69539 8.37582 9.19083 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.010654 B = 0.004684 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.391622 B = 5976.096589 C = 7433.325569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.064 3.936 3 H 0.039 0.961 4 C 0.092 3.908 5 N -0.610 5.610 6 C 0.599 3.401 7 O -0.560 6.560 8 C -0.330 4.330 9 C 0.116 3.884 10 N -0.506 5.506 11 C 0.019 3.981 12 S 0.245 5.755 13 C 0.091 3.909 14 C 0.108 3.892 15 C -0.116 4.116 16 C 0.184 3.816 17 N -0.616 5.616 18 C -0.252 4.252 19 H 0.069 0.931 20 C -0.052 4.052 21 N -0.941 5.941 22 Si 0.974 3.026 23 H -0.288 1.288 24 H -0.286 1.286 25 H -0.270 1.270 26 C 0.121 3.879 27 O -0.365 6.365 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.184 0.816 34 H 0.241 0.759 35 H 0.123 0.877 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.038 0.962 40 H -0.003 1.003 41 H 0.251 0.749 42 H 0.024 0.976 43 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.560 -13.269 -13.469 18.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.006 3.994 3 H 0.057 0.943 4 C -0.029 4.029 5 N -0.342 5.342 6 C 0.388 3.612 7 O -0.441 6.441 8 C -0.454 4.454 9 C -0.043 4.043 10 N -0.220 5.220 11 C -0.274 4.274 12 S 0.501 5.499 13 C -0.033 4.033 14 C 0.067 3.933 15 C -0.155 4.155 16 C 0.059 3.941 17 N -0.342 5.342 18 C -0.381 4.381 19 H 0.087 0.913 20 C -0.246 4.246 21 N -0.588 5.588 22 Si 0.802 3.198 23 H -0.216 1.216 24 H -0.212 1.212 25 H -0.195 1.195 26 C -0.005 4.005 27 O -0.284 6.284 28 H 0.101 0.899 29 H 0.073 0.927 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.201 0.799 34 H 0.257 0.743 35 H 0.140 0.860 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.057 0.943 40 H 0.015 0.985 41 H 0.060 0.940 42 H 0.041 0.959 43 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 1.435 -13.503 -13.118 18.880 hybrid contribution 0.292 2.239 -0.073 2.259 sum 1.727 -11.264 -13.190 17.431 Atomic orbital electron populations 1.21683 0.89855 1.04248 1.03270 1.22649 0.97291 0.94827 0.84614 0.94336 1.22479 0.77896 1.03337 0.99223 1.48081 1.07734 1.62234 1.16131 1.16973 0.84301 0.77752 0.82172 1.90788 1.76248 1.42966 1.34100 1.25680 0.98669 1.11586 1.09431 1.22303 0.85435 0.98431 0.98125 1.66401 1.23784 1.13900 1.17875 1.29891 1.06534 0.96767 0.94162 1.84013 0.98698 1.36174 1.30969 1.22892 0.98615 0.99850 0.81972 1.22131 0.81645 0.94001 0.95544 1.22927 1.02845 0.97949 0.91756 1.21166 0.95943 0.84072 0.92898 1.44695 1.73396 1.15400 1.00753 1.19274 1.27500 0.98473 0.92848 0.91323 1.25680 1.00284 1.01339 0.97315 1.70113 1.43638 1.39272 1.05798 0.85150 0.78083 0.78909 0.77685 1.21551 1.21248 1.19493 1.21812 0.96475 0.95474 0.86759 1.87872 1.19644 1.76838 1.44032 0.89857 0.92705 0.88750 0.88038 0.87523 0.79911 0.74338 0.85952 0.88542 0.88027 0.87750 0.94326 0.98531 0.93979 0.95859 0.97557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 9.57 71.98 0.69 -2.20 16 2 C 0.06 1.82 3.17 30.69 0.10 1.92 16 3 H 0.04 1.33 6.22 -2.38 -0.01 1.32 16 4 C 0.09 2.20 5.92 86.35 0.51 2.71 16 5 N -0.61 -16.11 2.93 -822.33 -2.41 -18.52 16 6 C 0.60 17.58 7.65 86.45 0.66 18.24 16 7 O -0.56 -19.37 16.38 -4.31 -0.07 -19.44 16 8 C -0.33 -8.37 6.14 23.88 0.15 -8.22 16 9 C 0.12 2.94 11.13 84.23 0.94 3.88 16 10 N -0.51 -11.88 10.51 -202.56 -2.13 -14.01 16 11 C 0.02 0.32 12.22 130.60 1.60 1.92 16 12 S 0.24 4.30 18.75 -56.49 -1.06 3.24 16 13 C 0.09 2.22 4.27 86.21 0.37 2.59 16 14 C 0.11 3.53 0.81 -10.08 -0.01 3.52 16 15 C -0.12 -3.82 6.21 31.79 0.20 -3.62 16 16 C 0.18 8.79 5.38 86.88 0.47 9.26 16 17 N -0.62 -31.87 3.40 -692.47 -2.35 -34.22 16 18 C -0.25 -14.35 10.23 84.03 0.86 -13.49 16 19 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 20 C -0.05 -2.94 5.44 84.86 0.46 -2.47 16 21 N -0.94 -55.98 10.73 21.65 0.23 -55.75 16 22 Si 0.97 45.69 29.56 68.60 2.03 47.71 16 23 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 24 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 26 C 0.12 5.14 6.34 86.48 0.55 5.69 16 27 O -0.36 -12.15 9.90 -148.97 -1.48 -13.63 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.10 2.47 7.06 -2.39 -0.02 2.45 16 32 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.18 4.49 8.06 -2.91 -0.02 4.46 16 34 H 0.24 1.94 8.06 -2.91 -0.02 1.92 16 35 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.10 2.28 3.23 -22.59 -0.07 2.21 16 37 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 38 H 0.10 2.85 8.01 -2.38 -0.02 2.83 16 39 H 0.04 2.03 7.16 -2.38 -0.02 2.01 16 40 H 0.00 -0.19 7.98 -2.39 -0.02 -0.21 16 41 H 0.25 14.42 8.31 -92.72 -0.77 13.65 16 42 H 0.02 0.99 7.63 -2.39 -0.02 0.97 16 43 H 0.01 0.31 6.00 -2.39 -0.01 0.29 16 Total: -1.00 -75.71 352.36 1.26 -74.44 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 0.97 Total: 10.45 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: 7.53 Total: 19.71 kcal Atomic # 7 Polarization: -115.84 SS G_CDS: -6.66 Total: -122.50 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -1.55 Total: -33.06 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Atomic # 16 Polarization: 4.30 SS G_CDS: -1.06 Total: 3.24 kcal Total: -75.71 1.26 -74.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071144357.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.824 kcal (2) G-P(sol) polarization free energy of solvation -75.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds