Wall clock time and date at job start Tue Mar 31 2020 20:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.51373 * 2 1 4 4 C 1.53282 * 109.51419 * 239.90444 * 2 1 3 5 5 N 1.47163 * 108.57780 * 187.03913 * 4 2 1 6 6 C 1.34785 * 121.07799 * 231.23921 * 5 4 2 7 7 O 1.21684 * 119.99795 * 173.53345 * 6 5 4 8 8 C 1.46684 * 120.00037 * 353.53465 * 6 5 4 9 9 C 1.35659 * 126.13158 * 153.68084 * 8 6 5 10 10 N 1.30949 * 114.19130 * 179.82118 * 9 8 6 11 11 C 1.29430 * 117.36103 * 0.48741 * 10 9 8 12 12 S 1.70955 * 110.39173 * 359.72757 * 11 10 9 13 13 C 1.47332 * 117.84346 * 51.21633 * 5 4 2 14 14 C 1.52367 * 108.41153 * 310.82859 * 13 5 4 15 15 C 1.54366 * 110.37774 * 286.60463 * 14 13 5 16 16 C 1.54460 * 102.87680 * 207.57975 * 15 14 13 17 17 N 1.47089 * 107.29025 * 21.50313 * 16 15 14 18 18 C 1.36932 * 125.63073 * 180.98407 * 17 16 15 19 19 H 1.08004 * 120.00273 * 180.02562 * 18 17 16 20 20 C 1.38810 * 119.99769 * 0.02562 * 18 17 16 21 21 N 1.31618 * 120.00448 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99662 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47072 * 180.02562 * 22 20 18 24 24 H 1.48490 * 109.47353 * 300.00396 * 22 20 18 25 25 H 1.48499 * 109.46759 * 60.00575 * 22 20 18 26 26 C 1.47577 * 108.73742 * 1.24216 * 17 16 15 27 27 O 1.41889 * 111.44982 * 50.06381 * 14 13 5 28 28 H 1.08997 * 109.46879 * 180.09892 * 1 2 3 29 29 H 1.08996 * 109.46869 * 300.09997 * 1 2 3 30 30 H 1.09003 * 109.46761 * 60.09730 * 1 2 3 31 31 H 1.08991 * 109.62130 * 67.30695 * 4 2 1 32 32 H 1.08999 * 109.76705 * 306.84742 * 4 2 1 33 33 H 1.08004 * 122.90122 * 0.02562 * 9 8 6 34 34 H 1.07997 * 124.79749 * 179.69653 * 11 10 9 35 35 H 1.08995 * 109.68205 * 191.09037 * 13 5 4 36 36 H 1.09007 * 109.70178 * 70.57150 * 13 5 4 37 37 H 1.09002 * 110.73220 * 89.23533 * 15 14 13 38 38 H 1.08999 * 110.73388 * 325.93243 * 15 14 13 39 39 H 1.08999 * 109.88029 * 262.07909 * 16 15 14 40 40 H 1.08996 * 109.87975 * 140.92055 * 16 15 14 41 41 H 0.96995 * 120.00415 * 179.97438 * 21 20 18 42 42 H 1.09002 * 110.37511 * 95.25943 * 26 17 16 43 43 H 1.09000 * 110.37788 * 217.59749 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0420 -0.7245 -1.2500 5 7 3.5035 -0.8621 -1.1465 6 6 4.3119 -0.4734 -2.1525 7 8 5.5194 -0.4857 -2.0021 8 6 3.7362 -0.0355 -3.4286 9 6 4.3092 0.8181 -4.3137 10 7 3.5887 1.0456 -5.3832 11 6 2.4407 0.4534 -5.4641 12 16 2.1729 -0.5181 -4.0831 13 6 4.0544 -1.4380 0.0926 14 6 3.4228 -0.7205 1.2791 15 6 4.0036 0.7029 1.4178 16 6 3.8589 0.9880 2.9290 17 7 3.7532 -0.3111 3.6108 18 6 3.5926 -0.4940 4.9583 19 1 3.5257 -1.4929 5.3635 20 6 3.5158 0.6044 5.8035 21 7 3.5969 1.8218 5.3098 22 14 3.2960 0.3548 7.6417 23 1 3.2428 1.6759 8.3178 24 1 2.0310 -0.3809 7.8936 25 1 4.4390 -0.4290 8.1750 26 6 3.8552 -1.3848 2.6035 27 8 2.0090 -0.6769 1.1664 28 1 -0.3633 -1.0276 0.0018 29 1 -0.3633 0.5154 0.8891 30 1 -0.3633 0.5123 -0.8909 31 1 1.7909 -0.1443 -2.1379 32 1 1.5853 -1.7119 -1.3168 33 1 5.2775 1.2683 -4.1519 34 1 1.7496 0.5585 -6.2874 35 1 5.1354 -1.2995 0.1129 36 1 3.8199 -2.5015 0.1395 37 1 3.4219 1.4157 0.8333 38 1 5.0519 0.7227 1.1200 39 1 2.9594 1.5762 3.1108 40 1 4.7353 1.5259 3.2903 41 1 3.5429 2.5893 5.9003 42 1 4.8822 -1.7434 2.5337 43 1 3.1822 -2.2049 2.8536 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071144359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:29 Heat of formation + Delta-G solvation = -3.571816 kcal Electronic energy + Delta-G solvation = -28034.289316 eV Core-core repulsion = 24207.288994 eV Total energy + Delta-G solvation = -3827.000322 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.98735 -40.84170 -39.74994 -38.00612 -35.96859 -34.83168 -33.01884 -32.01075 -31.05767 -30.01977 -27.87191 -27.65747 -26.64046 -25.40945 -23.24929 -22.62698 -22.05745 -21.00700 -20.36170 -19.58476 -18.96853 -18.09028 -17.78390 -17.50375 -16.82419 -16.62254 -16.15158 -15.89269 -15.74179 -15.53360 -15.18677 -15.13168 -14.95734 -14.64854 -14.27170 -14.05670 -13.80626 -13.61274 -13.28762 -13.12284 -13.02167 -12.83139 -12.73528 -12.69383 -12.30505 -12.09608 -12.05193 -11.87154 -11.82824 -11.64652 -11.25451 -10.98616 -10.74074 -10.70037 -10.51519 -9.97562 -9.66100 -8.91833 -7.84276 -5.20293 -0.79873 0.10251 0.52271 1.34929 1.45757 1.49959 1.55797 1.58798 1.98890 2.49116 2.56237 3.16096 3.33858 3.39623 3.48571 3.52028 3.74809 3.84447 3.84896 3.96800 4.07701 4.12359 4.30851 4.33104 4.38080 4.43458 4.54248 4.62484 4.73077 4.75595 4.82823 4.92970 4.96461 5.00964 5.06532 5.13121 5.31699 5.42866 5.56489 5.69354 6.04423 6.16644 6.33515 6.54695 6.79069 7.08308 7.75199 8.40118 9.26471 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.024513 B = 0.003064 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.980594 B = 9136.514044 C = 9515.273514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.064 3.936 3 H 0.049 0.951 4 C 0.072 3.928 5 N -0.606 5.606 6 C 0.596 3.404 7 O -0.563 6.563 8 C -0.325 4.325 9 C 0.113 3.887 10 N -0.505 5.505 11 C 0.029 3.971 12 S 0.251 5.749 13 C 0.108 3.892 14 C 0.108 3.892 15 C -0.151 4.151 16 C 0.199 3.801 17 N -0.621 5.621 18 C -0.240 4.240 19 H 0.087 0.913 20 C -0.069 4.069 21 N -0.954 5.954 22 Si 0.982 3.018 23 H -0.296 1.296 24 H -0.275 1.275 25 H -0.276 1.276 26 C 0.147 3.853 27 O -0.365 6.365 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.179 0.821 34 H 0.245 0.755 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.008 0.992 40 H 0.003 0.997 41 H 0.246 0.754 42 H 0.051 0.949 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.874 -6.457 -24.033 26.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.006 3.994 3 H 0.067 0.933 4 C -0.051 4.051 5 N -0.338 5.338 6 C 0.385 3.615 7 O -0.443 6.443 8 C -0.449 4.449 9 C -0.045 4.045 10 N -0.219 5.219 11 C -0.264 4.264 12 S 0.506 5.494 13 C -0.015 4.015 14 C 0.067 3.933 15 C -0.190 4.190 16 C 0.074 3.926 17 N -0.347 5.347 18 C -0.369 4.369 19 H 0.104 0.896 20 C -0.261 4.261 21 N -0.603 5.603 22 Si 0.810 3.190 23 H -0.222 1.222 24 H -0.201 1.201 25 H -0.202 1.202 26 C 0.021 3.979 27 O -0.284 6.284 28 H 0.098 0.902 29 H 0.070 0.930 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.196 0.804 34 H 0.261 0.739 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.027 0.973 40 H 0.022 0.978 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.100 -6.749 -23.815 26.373 hybrid contribution 1.324 1.085 1.345 2.177 sum -7.776 -5.663 -22.470 24.443 Atomic orbital electron populations 1.21744 0.89736 1.04260 1.03673 1.22704 0.97371 0.95060 0.84296 0.93291 1.23055 0.78528 1.03991 0.99529 1.48048 1.07782 1.61936 1.16032 1.17082 0.85587 0.76410 0.82447 1.90825 1.15289 1.55663 1.82537 1.25589 1.03811 1.12714 1.02828 1.22260 1.00542 0.94522 0.87204 1.66379 1.06399 1.25853 1.23274 1.29783 0.96772 0.96266 1.03561 1.83840 1.11067 1.43438 1.11026 1.22024 0.99942 0.98246 0.81279 1.22137 0.81761 0.94649 0.94772 1.23180 1.00641 0.97724 0.97422 1.20737 0.97126 0.87268 0.87462 1.44694 1.85778 1.01574 1.02651 1.19450 1.42057 0.93317 0.82055 0.89562 1.25690 1.02636 0.95044 1.02737 1.70197 1.58101 0.97526 1.34503 0.85105 0.78345 0.76235 0.79358 1.22223 1.20134 1.20151 1.21584 0.98409 0.91679 0.86196 1.87890 1.19491 1.77036 1.43969 0.90241 0.92976 0.87575 0.87199 0.87194 0.80442 0.73918 0.88749 0.88070 0.91209 0.91336 0.97338 0.97843 0.94531 0.93145 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.57 71.98 0.69 -1.81 16 2 C 0.06 1.59 3.19 30.69 0.10 1.69 16 3 H 0.05 1.39 6.23 -2.38 -0.01 1.37 16 4 C 0.07 1.35 4.95 86.35 0.43 1.78 16 5 N -0.61 -15.21 2.95 -823.37 -2.43 -17.64 16 6 C 0.60 16.34 7.63 86.45 0.66 17.00 16 7 O -0.56 -19.70 16.46 -4.30 -0.07 -19.77 16 8 C -0.33 -6.79 5.88 23.88 0.14 -6.65 16 9 C 0.11 2.40 11.19 84.23 0.94 3.34 16 10 N -0.51 -9.21 10.51 -202.56 -2.13 -11.34 16 11 C 0.03 0.30 12.22 130.60 1.60 1.90 16 12 S 0.25 2.67 19.29 -56.49 -1.09 1.58 16 13 C 0.11 3.08 5.32 86.01 0.46 3.54 16 14 C 0.11 3.83 0.84 -10.08 -0.01 3.82 16 15 C -0.15 -6.12 5.86 31.55 0.19 -5.94 16 16 C 0.20 10.49 5.38 86.76 0.47 10.96 16 17 N -0.62 -33.07 3.40 -692.29 -2.35 -35.42 16 18 C -0.24 -13.79 10.28 84.03 0.86 -12.92 16 19 H 0.09 4.67 7.83 -2.91 -0.02 4.64 16 20 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 21 N -0.95 -59.34 10.31 21.65 0.22 -59.11 16 22 Si 0.98 46.74 29.55 68.60 2.03 48.77 16 23 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 26 C 0.15 6.09 6.43 86.63 0.56 6.64 16 27 O -0.36 -12.54 9.94 -148.95 -1.48 -14.02 16 28 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.11 1.57 3.99 -19.29 -0.08 1.49 16 32 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.18 3.85 8.06 -2.91 -0.02 3.83 16 34 H 0.24 0.26 8.06 -2.91 -0.02 0.24 16 35 H 0.09 2.96 6.84 -2.39 -0.02 2.94 16 36 H 0.10 2.44 8.14 -2.38 -0.02 2.43 16 37 H 0.07 2.67 6.07 -2.39 -0.01 2.66 16 38 H 0.07 2.74 7.82 -2.39 -0.02 2.72 16 39 H 0.01 0.50 7.38 -2.39 -0.02 0.48 16 40 H 0.00 0.20 7.50 -2.39 -0.02 0.18 16 41 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 42 H 0.05 1.97 8.00 -2.39 -0.02 1.95 16 43 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -79.18 352.91 1.21 -77.97 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 0.97 Total: 9.20 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: 7.54 Total: 19.80 kcal Atomic # 7 Polarization: -116.83 SS G_CDS: -6.69 Total: -123.51 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -1.55 Total: -33.80 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -1.09 Total: 1.58 kcal Total: -79.18 1.21 -77.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071144359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.397 kcal (2) G-P(sol) polarization free energy of solvation -79.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds