Wall clock time and date at job start Tue Mar 31 2020 20:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.51476 * 2 1 4 4 C 1.53284 * 109.51269 * 239.90156 * 2 1 3 5 5 N 1.47168 * 108.55517 * 186.99480 * 4 2 1 6 6 C 1.34774 * 121.07796 * 231.23308 * 5 4 2 7 7 O 1.21634 * 120.00262 * 6.65927 * 6 5 4 8 8 C 1.47103 * 120.00147 * 186.93003 * 6 5 4 9 9 C 1.38384 * 128.00059 * 197.95245 * 8 6 5 10 10 C 1.37580 * 111.26430 * 179.86165 * 9 8 6 11 11 N 1.29559 * 117.94810 * 0.47109 * 10 9 8 12 12 S 1.56309 * 110.38053 * 359.73062 * 11 10 9 13 13 C 1.47335 * 117.84103 * 51.50482 * 5 4 2 14 14 C 1.52769 * 108.21418 * 310.53359 * 13 5 4 15 15 C 1.54360 * 110.33740 * 173.65688 * 14 13 5 16 16 C 1.54468 * 102.87546 * 152.53361 * 15 14 13 17 17 N 1.47084 * 107.29315 * 338.50277 * 16 15 14 18 18 C 1.36935 * 125.63365 * 178.98872 * 17 16 15 19 19 H 1.07996 * 120.00489 * 180.02562 * 18 17 16 20 20 C 1.38812 * 119.99715 * 0.02562 * 18 17 16 21 21 N 1.31628 * 120.00057 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00195 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47117 * 60.00152 * 22 20 18 24 24 H 1.48496 * 109.47403 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47207 * 300.00110 * 22 20 18 26 26 C 1.47577 * 108.74034 * 359.00819 * 17 16 15 27 27 O 1.41885 * 111.39089 * 50.23711 * 14 13 5 28 28 H 1.09001 * 109.46913 * 180.10057 * 1 2 3 29 29 H 1.08999 * 109.46607 * 300.09980 * 1 2 3 30 30 H 1.08997 * 109.46918 * 60.10220 * 1 2 3 31 31 H 1.08997 * 109.62601 * 67.27004 * 4 2 1 32 32 H 1.09007 * 109.77537 * 306.80066 * 4 2 1 33 33 H 1.08001 * 124.36465 * 0.02562 * 9 8 6 34 34 H 1.07994 * 121.02374 * 180.19788 * 10 9 8 35 35 H 1.08993 * 109.64098 * 70.28097 * 13 5 4 36 36 H 1.09004 * 109.64031 * 190.91136 * 13 5 4 37 37 H 1.09000 * 110.73206 * 270.87684 * 15 14 13 38 38 H 1.08997 * 110.73390 * 34.19140 * 15 14 13 39 39 H 1.09002 * 109.87932 * 97.92144 * 16 15 14 40 40 H 1.09000 * 109.87873 * 218.92958 * 16 15 14 41 41 H 0.97000 * 119.99752 * 179.97438 * 21 20 18 42 42 H 1.09004 * 110.37439 * 264.49326 * 26 17 16 43 43 H 1.08999 * 110.37741 * 142.14540 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0420 -0.7246 -1.2500 5 7 3.5037 -0.8610 -1.1465 6 6 4.3117 -0.4721 -2.1527 7 8 3.8480 0.1103 -3.1146 8 6 5.7534 -0.7573 -2.0904 9 6 6.7710 -0.1669 -2.8191 10 6 7.9963 -0.6947 -2.4832 11 7 8.0298 -1.6290 -1.5862 12 16 6.5874 -1.9410 -1.0712 13 6 4.0547 -1.4420 0.0902 14 6 3.4227 -0.7209 1.2795 15 6 3.8445 -1.3958 2.6021 16 6 3.7655 -0.2370 3.6204 17 7 3.8530 1.0194 2.8606 18 6 3.8007 2.2795 3.3940 19 1 3.8737 3.1425 2.7488 20 6 3.6537 2.4477 4.7640 21 7 3.5652 1.3959 5.5505 22 14 3.5816 4.1666 5.4917 23 1 2.4269 4.9005 4.9143 24 1 3.4232 4.0741 6.9653 25 1 4.8380 4.8917 5.1740 26 6 4.0061 0.6978 1.4285 27 8 2.0090 -0.6770 1.1664 28 1 -0.3633 -1.0277 0.0018 29 1 -0.3632 0.5154 0.8891 30 1 -0.3633 0.5122 -0.8909 31 1 1.7904 -0.1448 -2.1380 32 1 1.5860 -1.7124 -1.3164 33 1 6.6226 0.6100 -3.5545 34 1 8.9018 -0.3441 -2.9559 35 1 3.8164 -2.5047 0.1336 36 1 5.1359 -1.3048 0.1095 37 1 3.1488 -2.1915 2.8683 38 1 4.8625 -1.7792 2.5321 39 1 2.8182 -0.2798 4.1578 40 1 4.5945 -0.3053 4.3247 41 1 3.4629 1.5134 6.5079 42 1 5.0594 0.7063 1.1481 43 1 3.4444 1.4052 0.8185 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071174139.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:04 Heat of formation + Delta-G solvation = 16.462591 kcal Electronic energy + Delta-G solvation = -28373.492588 eV Core-core repulsion = 24547.361023 eV Total energy + Delta-G solvation = -3826.131565 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.73525 -39.49568 -38.55699 -36.28825 -34.91925 -33.23144 -31.83371 -31.26453 -29.48489 -28.37629 -27.46931 -26.02082 -25.20291 -23.84938 -22.35643 -21.47215 -20.19639 -19.90876 -19.01029 -18.60609 -17.13407 -16.94547 -16.68894 -16.12347 -15.53956 -15.51592 -14.81294 -14.61086 -14.41020 -14.05984 -14.02987 -13.78145 -13.49154 -13.46277 -13.04798 -12.60186 -12.26653 -12.22320 -12.07724 -11.82945 -11.61439 -11.55253 -11.09956 -10.91404 -10.87243 -10.76835 -10.51288 -10.33265 -10.28425 -10.13914 -9.94511 -9.89077 -9.71549 -9.63135 -8.90344 -8.60133 -8.49791 -6.84622 -5.72155 -3.05384 0.11080 1.04973 1.68382 2.04005 2.58976 2.91293 3.40193 3.44554 3.45609 3.80935 4.14685 4.45299 4.64891 4.74268 4.79047 4.87183 4.96964 5.02129 5.13176 5.25815 5.41042 5.43980 5.46637 5.50564 5.58191 5.61573 5.65233 5.74128 5.79442 6.05776 6.09139 6.10448 6.27350 6.31345 6.34085 6.40517 6.47830 6.55597 7.07936 7.50940 7.58163 7.63771 7.81791 7.84793 8.23999 9.20507 9.79968 10.45092 11.39538 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.011962 B = 0.004305 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.250787 B = 6502.731414 C = 7535.049854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.070 3.930 3 H 0.070 0.930 4 C 0.087 3.913 5 N -0.605 5.605 6 C 0.602 3.398 7 O -0.527 6.527 8 C -0.273 4.273 9 C -0.109 4.109 10 C 0.059 3.941 11 N -0.533 5.533 12 S 0.439 5.561 13 C 0.082 3.918 14 C 0.096 3.904 15 C -0.131 4.131 16 C 0.182 3.818 17 N -0.596 5.596 18 C -0.229 4.229 19 H 0.075 0.925 20 C -0.005 4.005 21 N -0.920 5.920 22 Si 0.911 3.089 23 H -0.285 1.285 24 H -0.289 1.289 25 H -0.286 1.286 26 C 0.120 3.880 27 O -0.343 6.343 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.175 0.825 34 H 0.181 0.819 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.045 0.955 41 H 0.253 0.747 42 H 0.020 0.980 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.510 -9.073 -15.166 17.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.011 3.989 3 H 0.088 0.912 4 C -0.035 4.035 5 N -0.338 5.338 6 C 0.389 3.611 7 O -0.404 6.404 8 C -0.406 4.406 9 C -0.144 4.144 10 C -0.133 4.133 11 N -0.362 5.362 12 S 0.595 5.405 13 C -0.043 4.043 14 C 0.054 3.946 15 C -0.170 4.170 16 C 0.057 3.943 17 N -0.322 5.322 18 C -0.357 4.357 19 H 0.093 0.907 20 C -0.201 4.201 21 N -0.568 5.568 22 Si 0.742 3.258 23 H -0.212 1.212 24 H -0.215 1.215 25 H -0.212 1.212 26 C -0.007 4.007 27 O -0.262 6.262 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.192 0.808 34 H 0.198 0.802 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.037 0.963 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.630 -10.328 -13.876 17.375 hybrid contribution 0.283 2.432 -1.039 2.660 sum 1.914 -7.896 -14.916 16.985 Atomic orbital electron populations 1.21671 0.92204 1.02862 1.02955 1.22481 0.95509 0.96393 0.84473 0.91200 1.22472 0.78219 1.02208 1.00607 1.48003 1.07298 1.62251 1.16277 1.16717 0.83420 0.78497 0.82467 1.90802 1.75444 1.41149 1.33030 1.26790 0.98750 1.07862 1.07202 1.22102 0.90177 1.01511 1.00657 1.22238 0.99664 0.94904 0.96495 1.72140 1.25586 1.20998 1.17466 1.82019 0.91216 1.32936 1.34354 1.22803 0.98660 0.98848 0.84002 1.22346 0.81760 0.96934 0.93575 1.22893 1.00219 1.00203 0.93689 1.21176 1.01424 0.81143 0.90518 1.44375 1.85995 1.02565 0.99290 1.18961 1.43532 0.82467 0.90765 0.90722 1.24767 1.02006 0.97377 0.95967 1.69941 1.56199 1.27066 1.03550 0.86212 0.77891 0.83608 0.78116 1.21173 1.21521 1.21219 1.21917 0.96771 0.93040 0.89002 1.87861 1.19448 1.76579 1.42305 0.91814 0.90943 0.91125 0.88008 0.90283 0.80815 0.80179 0.89404 0.89452 0.90508 0.90788 0.93016 0.93651 0.93664 0.96268 0.94008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.57 37.16 0.36 -1.29 16 2 C 0.07 1.02 3.20 -26.58 -0.08 0.93 16 3 H 0.07 1.17 6.26 -51.93 -0.32 0.84 16 4 C 0.09 1.10 5.92 -3.53 -0.02 1.08 16 5 N -0.61 -8.26 2.95 -173.83 -0.51 -8.78 16 6 C 0.60 8.72 7.68 -12.67 -0.10 8.62 16 7 O -0.53 -8.81 16.48 5.25 0.09 -8.73 16 8 C -0.27 -3.45 6.28 -35.93 -0.23 -3.67 16 9 C -0.11 -1.18 10.44 -39.77 -0.42 -1.60 16 10 C 0.06 0.60 11.15 -18.75 -0.21 0.39 16 11 N -0.53 -6.48 11.29 21.64 0.24 -6.23 16 12 S 0.44 4.96 19.42 -107.50 -2.09 2.87 16 13 C 0.08 1.09 4.44 -3.70 -0.02 1.08 16 14 C 0.10 1.62 0.83 -89.44 -0.07 1.55 16 15 C -0.13 -2.29 6.12 -25.25 -0.15 -2.45 16 16 C 0.18 4.30 5.38 -2.95 -0.02 4.29 16 17 N -0.60 -15.06 3.40 -170.31 -0.58 -15.64 16 18 C -0.23 -6.38 10.28 -15.06 -0.15 -6.54 16 19 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 20 C 0.00 -0.13 5.49 -17.43 -0.10 -0.23 16 21 N -0.92 -26.73 10.31 55.49 0.57 -26.16 16 22 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 C 0.12 2.47 6.19 -2.87 -0.02 2.45 16 27 O -0.34 -5.98 9.92 -35.22 -0.35 -6.33 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.10 1.27 7.06 -51.93 -0.37 0.90 16 32 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 33 H 0.17 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.18 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.09 1.13 3.57 -23.63 -0.08 1.04 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.07 1.11 8.00 -51.93 -0.42 0.70 16 39 H 0.05 1.38 7.39 -51.93 -0.38 1.00 16 40 H 0.05 1.17 7.50 -51.93 -0.39 0.78 16 41 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.02 0.40 7.83 -51.93 -0.41 0.00 16 43 H 0.04 0.89 6.10 -51.93 -0.32 0.58 16 LS Contribution 352.43 15.07 5.31 5.31 Total: -1.00 -33.23 352.43 -9.18 -42.41 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.62 Total: -0.43 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -1.23 Total: 4.61 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.28 Total: -56.81 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.26 Total: -15.06 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: 4.96 SS G_CDS: -2.09 Total: 2.87 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.23 -9.18 -42.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071174139.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.876 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds